mRNA_H-canaliculatus_F_contig1505.3798.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1505.3798.1
Unique NamemRNA_H-canaliculatus_F_contig1505.3798.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1505.3798.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1505contigH-canaliculatus_F_contig1505:14325..16808 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons4
Model size793
Cds size759
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1505.3798.1prot_H-canaliculatus_F_contig1505.3798.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1505 14325..16776 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929247.201817-CDS-H-canaliculatus_F_contig1505:14324..144441622929247.201817-CDS-H-canaliculatus_F_contig1505:14324..14444Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1505 14325..14444 -
1696845734.723338-CDS-H-canaliculatus_F_contig1505:14324..144441696845734.723338-CDS-H-canaliculatus_F_contig1505:14324..14444Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1505 14325..14444 -
1622929247.2284675-CDS-H-canaliculatus_F_contig1505:15431..155781622929247.2284675-CDS-H-canaliculatus_F_contig1505:15431..15578Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1505 15432..15578 -
1696845734.731711-CDS-H-canaliculatus_F_contig1505:15431..155781696845734.731711-CDS-H-canaliculatus_F_contig1505:15431..15578Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1505 15432..15578 -
1622929247.2456129-CDS-H-canaliculatus_F_contig1505:15883..163051622929247.2456129-CDS-H-canaliculatus_F_contig1505:15883..16305Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1505 15884..16305 -
1696845734.7430573-CDS-H-canaliculatus_F_contig1505:15883..163051696845734.7430573-CDS-H-canaliculatus_F_contig1505:15883..16305Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1505 15884..16305 -
1622929247.2695289-CDS-H-canaliculatus_F_contig1505:16706..167761622929247.2695289-CDS-H-canaliculatus_F_contig1505:16706..16776Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1505 16707..16776 -
1696845734.7514577-CDS-H-canaliculatus_F_contig1505:16706..167761696845734.7514577-CDS-H-canaliculatus_F_contig1505:16706..16776Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1505 16707..16776 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929247.2842116-UTR-H-canaliculatus_F_contig1505:16776..168081622929247.2842116-UTR-H-canaliculatus_F_contig1505:16776..16808Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1505 16777..16808 -
1696845734.7597492-UTR-H-canaliculatus_F_contig1505:16776..168081696845734.7597492-UTR-H-canaliculatus_F_contig1505:16776..16808Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1505 16777..16808 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1505.3798.1

>prot_H-canaliculatus_F_contig1505.3798.1 ID=prot_H-canaliculatus_F_contig1505.3798.1|Name=mRNA_H-canaliculatus_F_contig1505.3798.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=253bp
MVVSSLPLAAASALVTFVGEVPGEELSRTAQGGPPLAIGVLAPLGQLLLV
GGGPGMGVPLLVFRYPHPMSGSLSRRLGGLSRPQVPPPEAFQVVPLQSSV
TRPSLEGLGKLTQEQLRLILQGGTVTGDETGDWLASGSGSLSGRLELALH
ALDREQDLSSALRQAYETWRELCLPRATTLPTVDRNSEDAPSPMRSSPGP
TSLSLVGGAYLEQTLTTTPLSLCCCRSPSSKTRRVRLPTIYPPGVQSMLQ
GKM
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mRNA from alignment at H-canaliculatus_F_contig1505:14325..16808-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1505.3798.1 ID=mRNA_H-canaliculatus_F_contig1505.3798.1|Name=mRNA_H-canaliculatus_F_contig1505.3798.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2484bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1505:14325..16808- (Hapterophycus canaliculatus Oshoro5f female)
GTGGTGGCGGTGGCGGCTGCGACGGTGAAGAGATGGTTGTATCTTCTCTT
CCGCTGGCGGCGGCGTCGGCGTTGGTCACCTTCGTGGGGGAGGTGCCGGG
TGGTGAGTTGCGGAGTACGACTGGTTCCGTGGTAGCGGTTATTTAGAACG
GCTTATTTCACGGCTTTTACTGCTATCAGATACGAGTGCGTGAGTTGGAT
GCGGCTGGATGACGACTCGTGGAAATCTCCATATTTTTGGATGCAGCAAT
GACAAGACAACATCGAGCAAGCTGACATGTAAACGGAGGCCCTGTTAAGA
TAAATAGTACGAGTGACGTATCGGTTTGTTCAGGAGAAATATGTGGGAGG
TGGCGATGGCATCGCGTCCGAAATGAGGTTTGATGTTAAACAACAGTTAG
CGACCGTTGCGTTGTCCCAGCGTGTCTCTCTCACGCTCCACACATCCCGC
TTGTTCTCTCGCGTTCGTGCCACGCACGCTTGTGTTTTGTACTCGTACGC
TAGAGGAGCTGTCGAGGACAGCACAAGGTGGTCCTCCGCTGGCCATCGGA
GTTCTGGCACCCCTCGGCCAGCTGTTGCTCGTCGGAGGTGGTCCAGGCAT
GGGCGTCCCACTTTTGGTCTTCCGATACCCGCACCCCATGTCAGGCTCGC
TGAGCCGAAGGCTCGGCGGCCTTTCTCGGCCTCAGGTGCCCCCTCCCGAA
GCCTTCCAGGTCGTGCCGTTGCAGTCGTCGGTCACGCGCCCCTCGCTAGA
GGGACTGGGGAAGCTGACTCAGGAGCAGCTACGGTTGATATTGCAGGGGG
GTACGGTGACGGGGGATGAGACGGGGGACTGGCTGGCTAGCGGCAGCGGC
AGCCTTAGCGGCAGACTGGAGCTGGCTCTACACGCGTTGGACCGTGAGCA
GGACCTGTCCTCGGCACTGCGCCAGGTGTGTGTGTATTTGTGTGTGTTGC
TATCAGCGATGGCGGTTGTGGCGTTGTGGTTTTCGCTTTTAGGCAAAGGT
TTGGCGAGAGATAGGCGGCTTTGGTATCTGACACATACCGCAGCTGTACG
CGGTTGGATGAGCTGCGATGCTGTTGCTTTTTCCATCAGGGACTACTGTT
GCCGGTATTGACGCCTATCGTGGACGTTCGTCGTTTTGGAGGGTGCTGTC
CACGTCCTTTTGGTCACTGTTGGTGCTGTTAACGCTTCTTTTAATGCTGC
TGTAACTATTGCTGTTGGCTTTGCGGTCAGGCGTACGAAACTTGGCGGGA
GTTATGCCTTCCCAGGGCGACGACCTTGCCGACCGTCGACCGCAACTCGG
AGGATGCACCGTCGCCGATGCGCTCGTCGCCTGGCCCCACAAGCTTGTCC
CTTGTCGGCGGCGCATATCTGGAGCAGGTGCATGGAGGGGTCGTATTACG
CTTGCTTCGGCAGAATTGCCCGTGATGCACGCGGGCGCATTCATTTCTGT
TGCTGTTGCTGTTGCTGCTGCCGCTGCTGCTGCTGCTGCTGCTGCTGCTG
CTGCTGCTTGTTGTCAGCAAGCCTTTGTCGGCTTTCCCGTTGGTAACGCT
GATACTTGTAGTCTGATTTCAGTGTGCGAACAGAAGGTCCCGGTGTTTCG
TCGTGGTCCCTGTGCTTTCCGGGGCATAGTCCACCCTGCACCTTGATCCT
GCAAAGTTGCGCCACGCACACGACTCCCTTGCATACCTAGCGGAGCGGCC
TGGAGCACCTCACGTTCGATTCTCGGTCGTCTTTGGTCGAAGACGTCTAC
AATTCCGTCGGCTCACTCTGCAGTTACTTGTCGTTTGGCTCCTGAAACGT
CTTGCTGCGGTGTGTGCCTCGTCTCGTCCCAGAGATAATAGTAGAGAGTG
TCGTGTGGGTGTACTGTCGTTTACGTGACCTTTGTTTTTGTTTTTTGCAA
GGCGTGAATGTGCCAAACCAGCAGACCGATGGAGAGACGGCAGCCTATGT
CTGCGCCATGGATCACGAAGACTTGGTCGAACTGGTGTATTCCGTCGACG
GAGGGGAAGCCAATCGAACCGTAGAGTGCTTAATTTGTGAACCGAGTAGC
CTGCATCATGAGGATGTCCGTTGTGTTGATGGTGAAGGCATGGACCCTTC
CGAGGCGGGCTTGTGGTACTACGCTGGTAAGGCTGGGACTTAGTTTTGTG
TCGTCCTCGCAGTTGCTGAGGTAGTTGTTGCAGTCAGTTCAATGCCCCCG
TATCTGCTAGAGGCGGGCAATACTTCTAGGTAGACACCGACGGCTTTTGG
TATCTGGCTTGCTCACCGCCATGGCCGAGATGACGGTTGTCGCCTTTGTG
GCTGTTCTCCCATCTCCGCCTTCCGACCGCTTATACCCCCGTGTAGCGAC
CCGACCCGACCCAGACCCTCACCACCACTCCGCTCTCTCTCTGCTGCTGC
AGGAGTCCGTCCTCGAAGACAAGAAGGGTACGCCTTCCGACGATCTATCC
CCCGGGGGTCCAGTCGATGCTTCAGGGCAAGATG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1505:14325..16808-

>mRNA_H-canaliculatus_F_contig1505.3798.1 ID=mRNA_H-canaliculatus_F_contig1505.3798.1|Name=mRNA_H-canaliculatus_F_contig1505.3798.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1518bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1505:14325..16808- (Hapterophycus canaliculatus Oshoro5f female)
ATGGTTGTATCTTCTCTTCCGCTGGCGGCGGCGTCGGCGTTGGTCACCTT
CGTGGGGGAGGTGCCGGGTGATGGTTGTATCTTCTCTTCCGCTGGCGGCG
GCGTCGGCGTTGGTCACCTTCGTGGGGGAGGTGCCGGGTGAGGAGCTGTC
GAGGACAGCACAAGGTGGTCCTCCGCTGGCCATCGGAGTTCTGGCACCCC
TCGGCCAGCTGTTGCTCGTCGGAGGTGGTCCAGGCATGGGCGTCCCACTT
TTGGTCTTCCGATACCCGCACCCCATGTCAGGCTCGCTGAGCCGAAGGCT
CGGCGGCCTTTCTCGGCCTCAGGTGCCCCCTCCCGAAGCCTTCCAGGTCG
TGCCGTTGCAGTCGTCGGTCACGCGCCCCTCGCTAGAGGGACTGGGGAAG
CTGACTCAGGAGCAGCTACGGTTGATATTGCAGGGGGGTACGGTGACGGG
GGATGAGACGGGGGACTGGCTGGCTAGCGGCAGCGGCAGCCTTAGCGGCA
GACTGGAGCTGGCTCTACACGCGTTGGACCGTGAGCAGGACCTGTCCTCG
GCACTGCGCCAGAGGAGCTGTCGAGGACAGCACAAGGTGGTCCTCCGCTG
GCCATCGGAGTTCTGGCACCCCTCGGCCAGCTGTTGCTCGTCGGAGGTGG
TCCAGGCATGGGCGTCCCACTTTTGGTCTTCCGATACCCGCACCCCATGT
CAGGCTCGCTGAGCCGAAGGCTCGGCGGCCTTTCTCGGCCTCAGGTGCCC
CCTCCCGAAGCCTTCCAGGTCGTGCCGTTGCAGTCGTCGGTCACGCGCCC
CTCGCTAGAGGGACTGGGGAAGCTGACTCAGGAGCAGCTACGGTTGATAT
TGCAGGGGGGTACGGTGACGGGGGATGAGACGGGGGACTGGCTGGCTAGC
GGCAGCGGCAGCCTTAGCGGCAGACTGGAGCTGGCTCTACACGCGTTGGA
CCGTGAGCAGGACCTGTCCTCGGCACTGCGCCAGGCGTACGAAACTTGGC
GGGAGTTATGCCTTCCCAGGGCGACGACCTTGCCGACCGTCGACCGCAAC
TCGGAGGATGCACCGTCGCCGATGCGCTCGTCGCCTGGCCCCACAAGCTT
GTCCCTTGTCGGCGGCGCATATCTGGAGCAGGCGTACGAAACTTGGCGGG
AGTTATGCCTTCCCAGGGCGACGACCTTGCCGACCGTCGACCGCAACTCG
GAGGATGCACCGTCGCCGATGCGCTCGTCGCCTGGCCCCACAAGCTTGTC
CCTTGTCGGCGGCGCATATCTGGAGCAGACCCTCACCACCACTCCGCTCT
CTCTCTGCTGCTGCAGGAGTCCGTCCTCGAAGACAAGAAGGGTACGCCTT
CCGACGATCTATCCCCCGGGGGTCCAGTCGATGCTTCAGGGCAAGATGAC
CCTCACCACCACTCCGCTCTCTCTCTGCTGCTGCAGGAGTCCGTCCTCGA
AGACAAGAAGGGTACGCCTTCCGACGATCTATCCCCCGGGGGTCCAGTCG
ATGCTTCAGGGCAAGATG
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