mRNA_H-canaliculatus_F_contig15046.3794.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig15046.3794.1
Unique NamemRNA_H-canaliculatus_F_contig15046.3794.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig15046.3794.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig15046contigH-canaliculatus_F_contig15046:810..2351 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size648
Cds size333
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig15046.3794.1prot_H-canaliculatus_F_contig15046.3794.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig15046 810..2038 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929246.951323-CDS-H-canaliculatus_F_contig15046:809..8931622929246.951323-CDS-H-canaliculatus_F_contig15046:809..893Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15046 810..893 +
1696845734.6615968-CDS-H-canaliculatus_F_contig15046:809..8931696845734.6615968-CDS-H-canaliculatus_F_contig15046:809..893Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15046 810..893 +
1622929246.9699745-CDS-H-canaliculatus_F_contig15046:1789..20381622929246.9699745-CDS-H-canaliculatus_F_contig15046:1789..2038Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15046 1790..2038 +
1696845734.6710212-CDS-H-canaliculatus_F_contig15046:1789..20381696845734.6710212-CDS-H-canaliculatus_F_contig15046:1789..2038Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15046 1790..2038 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929246.9873135-UTR-H-canaliculatus_F_contig15046:2038..23511622929246.9873135-UTR-H-canaliculatus_F_contig15046:2038..2351Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig15046 2039..2351 +
1696845734.6863792-UTR-H-canaliculatus_F_contig15046:2038..23511696845734.6863792-UTR-H-canaliculatus_F_contig15046:2038..2351Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig15046 2039..2351 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig15046.3794.1

>prot_H-canaliculatus_F_contig15046.3794.1 ID=prot_H-canaliculatus_F_contig15046.3794.1|Name=mRNA_H-canaliculatus_F_contig15046.3794.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=111bp
VVRLTPGTTVQPSLDGDRANRFVVKSGKTVWTFEAPDTERRDAWTDAVRA
VLEDATHTSTDGNFEDDGNKGLEDLAADSDGAAVRKTTESTSPLSVFFCL
QTLKAIDGFT*
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mRNA from alignment at H-canaliculatus_F_contig15046:810..2351+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig15046.3794.1 ID=mRNA_H-canaliculatus_F_contig15046.3794.1|Name=mRNA_H-canaliculatus_F_contig15046.3794.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1542bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15046:810..2351+ (Hapterophycus canaliculatus Oshoro5f female)
GTCGTCCGCCTCACCCCCGGCACGACTGTTCAACCAAGCCTCGACGGTGA
TCGTGCGAACCGCTTCGTGGTGAAGAGCGGCAAGGTGGGGAGGGGTGCTT
TGTTAGTGATCAAACCCGTGCTTTTATCTCGGAACAAAAAGGATAGGGGA
AAGTACGCCATGCCGTTCGTTGCGAGTGTGTAATTGAATCACGCGCCGTA
CGTCTCCTAGATTTTCCCGCAAAGAGTACCCTCTCCCGCAGAGAAAGAGA
AAAGGAGAAACGTTGAATTTGAAGAGGGCCTCAAATATGGAGACAGCCGT
CCCTATGACTAGGAGCGTTTTTCTCCCAGGGTAGCTTGTGCCCGGCGCGT
TCTGTCTGTAGTGCTGCCGATATTATTCTGCATGTTTTTTTCTTTTTGTG
TCGATCTTGGAGCTGCTGCTGCGAATCAGAGGCGGCGGTTCTCTCGGCGA
AACACGCTTCTTTCTTTTTTCTTCGGGCAAACCTGCGAAGGTGTTTGCCG
TGAACGGGTGCATGCAAATACTTGTGCATCATGGTGGACGGAGAGCGCGG
TATGTCGAATCATCAATGTTGTGTGCGCATGGTGCAGTCTAGGGGCTTTC
CTCCCGGCTAGTTTTCCCCACGTTTTTGTTTTTGGTAGTCTCCTTTCCCC
ATACACCGATTTGCGGCCCCGGGGGCGTCGTGGTTGATTCCTCCGTGCAG
CCCCCGGCGCCCGCTCTTTTATTGTCGTTTTCTTAGGGTGCGGTTGTGCC
TTTGTACACCCGGTTCGGTTTTACAGAAGCTGCCGCACTTGAGGCCGGAT
TACGTCGTCTTGCTGTTGCTTGATTGCAGCCCCAAACCCGTTTTTTGTTT
CTTTTCGTTATGCCCGCTTTCTGCACGAAAGTGTTGCAACGACAGCCAAA
AGAGACGGCAAATGCTGTCTTCGTTTTTTTTACGTCATGGCTGACCTCGT
CTGTGTTCCATCGCGCCCTATTCCTCCAAGACGGTCTGGACGTTTGAAGC
GCCAGACACGGAGCGCAGAGACGCCTGGACAGATGCTGTCAGAGCCGTCC
TCGAAGATGCCACCCACACGAGCACCGACGGGAACTTTGAAGACGACGGC
AACAAGGGTCTGGAGGACCTGGCCGCTGACTCCGACGGTGCAGCGGTGAG
AAAGACCACCGAGTCTACTTCCCCTCTGAGCGTGTTCTTCTGCCTGCAGA
CATTGAAGGCCATCGACGGTTTCACTTGACGGTTTCACTCGACGGTTTCA
CTGATCTCGCAGGAGTGAGGTGGGGGGTGCGCCAAATCTCGACATAGCTG
GTGATCGACTGCACAACCAGCAGGACGCACTAACGCACACCGGCCGAAAC
GCGCCGAGCCGTGTGCCGAAAAACAAGCTCCGTACGCAGAGCCTTGTGCA
AGGGAGAATGTCCGCTGCGGTCTTTGCCAACGCCAGCAAACAACATTTCT
GCATATGCCTGTCCACGTTTTGCCTTTTGGTGCAGTCTCGCAAGGGGATG
GTGCGCGTCAAGAGCGGCCTCCCAGGGTGGCGGAAGCGAGAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig15046:810..2351+

>mRNA_H-canaliculatus_F_contig15046.3794.1 ID=mRNA_H-canaliculatus_F_contig15046.3794.1|Name=mRNA_H-canaliculatus_F_contig15046.3794.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=666bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15046:810..2351+ (Hapterophycus canaliculatus Oshoro5f female)
GTCGTCCGCCTCACCCCCGGCACGACTGTTCAACCAAGCCTCGACGGTGA
TCGTGCGAACCGCTTCGTGGTGAAGAGCGGCAAGGTCGTCCGCCTCACCC
CCGGCACGACTGTTCAACCAAGCCTCGACGGTGATCGTGCGAACCGCTTC
GTGGTGAAGAGCGGCAAGACGGTCTGGACGTTTGAAGCGCCAGACACGGA
GCGCAGAGACGCCTGGACAGATGCTGTCAGAGCCGTCCTCGAAGATGCCA
CCCACACGAGCACCGACGGGAACTTTGAAGACGACGGCAACAAGGGTCTG
GAGGACCTGGCCGCTGACTCCGACGGTGCAGCGGTGAGAAAGACCACCGA
GTCTACTTCCCCTCTGAGCGTGTTCTTCTGCCTGCAGACATTGAAGGCCA
TCGACGGTTTCACTTGAACGGTCTGGACGTTTGAAGCGCCAGACACGGAG
CGCAGAGACGCCTGGACAGATGCTGTCAGAGCCGTCCTCGAAGATGCCAC
CCACACGAGCACCGACGGGAACTTTGAAGACGACGGCAACAAGGGTCTGG
AGGACCTGGCCGCTGACTCCGACGGTGCAGCGGTGAGAAAGACCACCGAG
TCTACTTCCCCTCTGAGCGTGTTCTTCTGCCTGCAGACATTGAAGGCCAT
CGACGGTTTCACTTGA
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