mRNA_H-canaliculatus_F_contig15036.3787.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig15036.3787.1
Unique NamemRNA_H-canaliculatus_F_contig15036.3787.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig15036.3787.1 vs. uniprot
Match: D7FSD7_ECTSI (Nicastrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSD7_ECTSI)

HSP 1 Score: 235 bits (599), Expect = 5.350e-69
Identity = 125/208 (60.10%), Postives = 136/208 (65.38%), Query Frame = 1 
Query:    1 LIGFLLFQEESLGFRVSVEAPFPPTMYAGPLEFRSGGGMPTVRHTKKDGSWKLHPSWTEPFDPEHDKIQLVPNLLEIFCRAFLSEQAGSAHAGRYGEAECRFSGDCPPEMCQEEEKGQGQEPEEDGSGRYDSDGRPEDRG--AGEIPSETSARGRSXXXXXXAAAGPRRATGST-----ARGRPECVRGRCGCPSGFHHIALGVGLER 603
            ++G L    E LGFRVSVEAPFPPT+Y GPLEF  GGGM TVRHTK DGSW+LHPSWTEPFDPEHDKIQLVPNLLE FCRAFLSEQAG+AHAGRYGEAEC+ SGDCP E CQE        P       +D D      G   G +     +  RS      A+               A  RPECVRGRCGCP+GFHHIAL VGLER
Sbjct:  611 VVGELANNAERLGFRVSVEAPFPPTLYTGPLEFHYGGGMATVRHTKGDGSWRLHPSWTEPFDPEHDKIQLVPNLLETFCRAFLSEQAGAAHAGRYGEAECQVSGDCPLEQCQES-------PSTSADNNHDDDANKSRDGLEGGRVRPGKGSEERSGNVLRSASXXXXXXXXXXXXXXXAVQRPECVRGRCGCPAGFHHIALDVGLER 811
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig15036.3787.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FSD7_ECTSI5.350e-6960.10Nicastrin n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig15036contigH-canaliculatus_F_contig15036:400..1616 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score239.6
Seed ortholog evalue1.3e-60
Seed eggNOG ortholog2880.D7FSD7
Preferred nameNCSTN
KEGG koko:K06171
KEGG Pathwayko04330,ko05010,map04330,map05010
KEGG ModuleM00682
GOsGO:0000003,GO:0000323,GO:0000902,GO:0000904,GO:0001654,GO:0001745,GO:0001751,GO:0001754,GO:0001775,GO:0002252,GO:0002262,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003006,GO:0003674,GO:0003824,GO:0004175,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005766,GO:0005768,GO:0005770,GO:0005773,GO:0005774,GO:0005783,GO:0005794,GO:0005886,GO:0005887,GO:0006508,GO:0006509,GO:0006518,GO:0006807,GO:0006810,GO:0006887,GO:0006897,GO:0006909,GO:0006955,GO:0006996,GO:0007010,GO:0007154,GO:0007165,GO:0007166,GO:0007219,GO:0007220,GO:0007267,GO:0007275,GO:0007389,GO:0007399,GO:0007423,GO:0007610,GO:0008150,GO:0008152,GO:0008233,GO:0008283,GO:0008594,GO:0009653,GO:0009790,GO:0009887,GO:0009987,GO:0010467,GO:0012505,GO:0012506,GO:0016020,GO:0016021,GO:0016043,GO:0016192,GO:0016485,GO:0016787,GO:0018991,GO:0019098,GO:0019538,GO:0022008,GO:0022414,GO:0022603,GO:0023052,GO:0030141,GO:0030154,GO:0030182,GO:0030587,GO:0030659,GO:0030667,GO:0031090,GO:0031154,GO:0031224,GO:0031226,GO:0031293,GO:0031410,GO:0031982,GO:0032501,GO:0032502,GO:0032504,GO:0032940,GO:0032943,GO:0032989,GO:0032991,GO:0033619,GO:0034205,GO:0034641,GO:0035295,GO:0035333,GO:0035577,GO:0036230,GO:0042051,GO:0042098,GO:0042110,GO:0042119,GO:0042461,GO:0042462,GO:0042478,GO:0042582,GO:0042592,GO:0042982,GO:0042987,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043299,GO:0043312,GO:0043603,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044671,GO:0045055,GO:0045165,GO:0045168,GO:0045314,GO:0045321,GO:0045463,GO:0045465,GO:0045595,GO:0045664,GO:0046331,GO:0046530,GO:0046532,GO:0046649,GO:0046651,GO:0046903,GO:0048468,GO:0048513,GO:0048565,GO:0048592,GO:0048598,GO:0048609,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048749,GO:0048837,GO:0048856,GO:0048869,GO:0048872,GO:0050435,GO:0050673,GO:0050767,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051239,GO:0051604,GO:0051703,GO:0051704,GO:0051716,GO:0051960,GO:0055037,GO:0055123,GO:0060284,GO:0060465,GO:0060581,GO:0065007,GO:0065008,GO:0065009,GO:0070011,GO:0070661,GO:0070765,GO:0071704,GO:0071840,GO:0071944,GO:0090596,GO:0090702,GO:0097708,GO:0098588,GO:0098657,GO:0098796,GO:0098797,GO:0098805,GO:0098852,GO:0099120,GO:0099503,GO:0140096,GO:1901564,GO:2000026,GO:2000027
EggNOG free text desc.Notch signaling pathway
EggNOG OGsKOG2657@1,KOG2657@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002
Hectar predicted targeting categoryother localisation
Exons3
Model size603
Cds size603
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig15036.3787.1prot_H-canaliculatus_F_contig15036.3787.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig15036 400..1616 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929246.2535846-CDS-H-canaliculatus_F_contig15036:399..6001622929246.2535846-CDS-H-canaliculatus_F_contig15036:399..600Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15036 400..600 +
1696845734.2154021-CDS-H-canaliculatus_F_contig15036:399..6001696845734.2154021-CDS-H-canaliculatus_F_contig15036:399..600Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15036 400..600 +
1622929246.2684143-CDS-H-canaliculatus_F_contig15036:1151..13411622929246.2684143-CDS-H-canaliculatus_F_contig15036:1151..1341Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15036 1152..1341 +
1696845734.227816-CDS-H-canaliculatus_F_contig15036:1151..13411696845734.227816-CDS-H-canaliculatus_F_contig15036:1151..1341Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15036 1152..1341 +
1622929246.2826753-CDS-H-canaliculatus_F_contig15036:1404..16161622929246.2826753-CDS-H-canaliculatus_F_contig15036:1404..1616Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15036 1405..1616 +
1696845734.2767944-CDS-H-canaliculatus_F_contig15036:1404..16161696845734.2767944-CDS-H-canaliculatus_F_contig15036:1404..1616Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15036 1405..1616 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig15036.3787.1

>prot_H-canaliculatus_F_contig15036.3787.1 ID=prot_H-canaliculatus_F_contig15036.3787.1|Name=mRNA_H-canaliculatus_F_contig15036.3787.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=201bp
LIGFLLFQEESLGFRVSVEAPFPPTMYAGPLEFRSGGGMPTVRHTKKDGS
WKLHPSWTEPFDPEHDKIQLVPNLLEIFCRAFLSEQAGSAHAGRYGEAEC
RFSGDCPPEMCQEEEKGQGQEPEEDGSGRYDSDGRPEDRGAGEIPSETSA
RGRSPSETGAAAAGPRRATGSTARGRPECVRGRCGCPSGFHHIALGVGLE
R
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mRNA from alignment at H-canaliculatus_F_contig15036:400..1616+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig15036.3787.1 ID=mRNA_H-canaliculatus_F_contig15036.3787.1|Name=mRNA_H-canaliculatus_F_contig15036.3787.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1217bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15036:400..1616+ (Hapterophycus canaliculatus Oshoro5f female)
CTGATCGGCTTTCTGCTTTTTCAGGAAGAGTCGCTGGGCTTTCGAGTGTC
GGTGGAGGCACCGTTCCCCCCGACGATGTACGCCGGGCCCCTGGAGTTCC
GCAGCGGGGGAGGCATGCCTACAGTGAGGCACACCAAAAAAGACGGCAGC
TGGAAGCTGCACCCGTCCTGGACGGAGCCTTTTGATCCGGAACACGACAA
GGTTCGTGCGTTGGAGTCATTGCCGGTGCTGTGGTTGATTTTCATGATAG
CGATGGCGGCGTTGTCGCTGTTGCTCTTGCTGTCTAGCCTCTTCGAAGGG
CCTTTAAGAGTTGCTTTAAACAAAAACGTAACAACAGCGTAGGAATACCT
CCTGAGGTACATCGTGCGAGGCGTGGCTCGAGGCTTCTGTTGAGCTCCAA
ACAGTGAGGGTTCCTTGATGTGTAGGGCTGGGACAAAAGCATCTGCAAGA
GTTATGTTGAAAAGGCAAGGGTTACGCAGACATGCCTCCCGTGTTAGTAC
AGACTCATACCCTGGCTGGCGCAGATGACGTTTATTTCGAGCGGCCGTAG
GGGGTGACGGTCTAGCAGCATATTTCTTGCAGCGGGCGAACCGGATCCTG
GTCTAGAAGCACATTTCCTTCACTATCCCTGGCTGTATTCGCATCCTCGA
CAGCTTCGCCCATCCTTCGCGCACCTTGCTAACCCCCATTTTTCTTCAAA
AGCCTCCCGTCGAACTCCGCCGACCGTCGCATATATTGTTTTTCGTCGCC
AGATTCAGCTGGTCCCGAACCTGCTCGAAATATTCTGCAGGGCTTTCCTA
TCGGAGCAGGCGGGGTCGGCTCACGCCGGCCGTTACGGCGAGGCCGAGTG
CAGGTTCTCCGGAGACTGCCCCCCGGAAATGTGCCAAGAAGAAGAGAAAG
GGCAGGGACAGGAGCCGGAAGAAGACGGAAGTGGCCGCTACGGTACCACC
GCGAAGACCATCGGTACAGGTGGCACCAACGCCGCCGCCGCCGCCGCCGC
CGTAGATAGCGACGGTCGTCCGGAGGATAGGGGAGCGGGAGAAATCCCCT
CGGAAACGAGTGCTCGTGGCAGGTCGCCTTCAGAAACAGGGGCAGCAGCA
GCTGGCCCTCGACGAGCGACGGGTTCGACCGCGCGGGGTCGTCCGGAGTG
CGTGAGGGGACGTTGCGGCTGCCCCAGCGGCTTCCACCACATCGCACTTG
GGGTGGGCCTTGAAAGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig15036:400..1616+

>mRNA_H-canaliculatus_F_contig15036.3787.1 ID=mRNA_H-canaliculatus_F_contig15036.3787.1|Name=mRNA_H-canaliculatus_F_contig15036.3787.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1206bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15036:400..1616+ (Hapterophycus canaliculatus Oshoro5f female)
CTGATCGGCTTTCTGCTTTTTCAGGAAGAGTCGCTGGGCTTTCGAGTGTC
GGTGGAGGCACCGTTCCCCCCGACGATGTACGCCGGGCCCCTGGAGTTCC
GCAGCGGGGGAGGCATGCCTACAGTGAGGCACACCAAAAAAGACGGCAGC
TGGAAGCTGCACCCGTCCTGGACGGAGCCTTTTGATCCGGAACACGACAA
GCTGATCGGCTTTCTGCTTTTTCAGGAAGAGTCGCTGGGCTTTCGAGTGT
CGGTGGAGGCACCGTTCCCCCCGACGATGTACGCCGGGCCCCTGGAGTTC
CGCAGCGGGGGAGGCATGCCTACAGTGAGGCACACCAAAAAAGACGGCAG
CTGGAAGCTGCACCCGTCCTGGACGGAGCCTTTTGATCCGGAACACGACA
AGATTCAGCTGGTCCCGAACCTGCTCGAAATATTCTGCAGGGCTTTCCTA
TCGGAGCAGGCGGGGTCGGCTCACGCCGGCCGTTACGGCGAGGCCGAGTG
CAGGTTCTCCGGAGACTGCCCCCCGGAAATGTGCCAAGAAGAAGAGAAAG
GGCAGGGACAGGAGCCGGAAGAAGACGGAAGTGGCCGCTACGATTCAGCT
GGTCCCGAACCTGCTCGAAATATTCTGCAGGGCTTTCCTATCGGAGCAGG
CGGGGTCGGCTCACGCCGGCCGTTACGGCGAGGCCGAGTGCAGGTTCTCC
GGAGACTGCCCCCCGGAAATGTGCCAAGAAGAAGAGAAAGGGCAGGGACA
GGAGCCGGAAGAAGACGGAAGTGGCCGCTACGATAGCGACGGTCGTCCGG
AGGATAGGGGAGCGGGAGAAATCCCCTCGGAAACGAGTGCTCGTGGCAGG
TCGCCTTCAGAAACAGGGGCAGCAGCAGCTGGCCCTCGACGAGCGACGGG
TTCGACCGCGCGGGGTCGTCCGGAGTGCGTGAGGGGACGTTGCGGCTGCC
CCAGCGGCTTCCACCACATCGCACTTGGGGTGGGCCTTGAAAGGATAGCG
ACGGTCGTCCGGAGGATAGGGGAGCGGGAGAAATCCCCTCGGAAACGAGT
GCTCGTGGCAGGTCGCCTTCAGAAACAGGGGCAGCAGCAGCTGGCCCTCG
ACGAGCGACGGGTTCGACCGCGCGGGGTCGTCCGGAGTGCGTGAGGGGAC
GTTGCGGCTGCCCCAGCGGCTTCCACCACATCGCACTTGGGGTGGGCCTT
GAAAGG
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