mRNA_H-canaliculatus_F_contig15004.3777.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig15004.3777.1
Unique NamemRNA_H-canaliculatus_F_contig15004.3777.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig15004.3777.1 vs. uniprot
Match: D8LFH3_ECTSI (Glucosylceramidase, family GH30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFH3_ECTSI)

HSP 1 Score: 129 bits (325), Expect = 3.050e-33
Identity = 61/77 (79.22%), Postives = 72/77 (93.51%), Query Frame = 1 
Query:    1 GSIVSSSSGRCMTAGWPFFTGVALKMSKGSRERYGKEYAVVVLNEAEEPVEFDLSFPAEGFVVRAIIGPRSIQTILA 231
            GS+VS+++GRCMTAGWPFFTG A +MS  S++RYGK+YAVV+LNEAEEPVEFDLSFP+EGF VRAIIGPR+IQTILA
Sbjct:  686 GSLVSAATGRCMTAGWPFFTGAAFEMSDASKDRYGKDYAVVLLNEAEEPVEFDLSFPSEGFSVRAIIGPRAIQTILA 762
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BLAST of mRNA_H-canaliculatus_F_contig15004.3777.1 vs. uniprot
Match: A0A835Z8L7_9STRA (Glucosylceramidase, family GH30 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8L7_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 5.770e-10
Identity = 33/66 (50.00%), Postives = 42/66 (63.64%), Query Frame = 1 
Query:   25 GRCMTAGWPFFTGVALKMSKGSRERYGKEYAVVVLNEAEEPVEFDLSFPAEGFVVRAIIGPRSIQT 222
            G+C+TAGWP+FT  A +  +G       +  VVVLNEAEEPVEFD+ F  +G  + A I   SIQT
Sbjct:  582 GQCLTAGWPWFTASAFETPRG-------DTVVVVLNEAEEPVEFDIVFQPQGRALAAAIPAHSIQT 640
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BLAST of mRNA_H-canaliculatus_F_contig15004.3777.1 vs. uniprot
Match: F0YG23_AURAN (Ricin B-type lectin domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YG23_AURAN)

HSP 1 Score: 62.0 bits (149), Expect = 2.050e-9
Identity = 35/74 (47.30%), Postives = 44/74 (59.46%), Query Frame = 1 
Query:    1 GSIVSSSSGRCMTAGWPFFTGVALKMSKGSRERYGKEYAVVVLNEAEEPVEFDLSFPAEGFVVRAIIGPRSIQT 222
            G++VS + GRC+TAGWPF   VA     G       + AVV LNEA    +FDL    +G VVRA +GP +IQT
Sbjct:  983 GALVSDADGRCVTAGWPFVQAVAFARPTG-------DVAVVALNEASHAADFDLDI--DGDVVRASLGPHTIQT 1047
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig15004.3777.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LFH3_ECTSI3.050e-3379.22Glucosylceramidase, family GH30 n=1 Tax=Ectocarpus... [more]
A0A835Z8L7_9STRA5.770e-1050.00Glucosylceramidase, family GH30 n=1 Tax=Tribonema ... [more]
F0YG23_AURAN2.050e-947.30Ricin B-type lectin domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig15004contigH-canaliculatus_F_contig15004:2112..2345 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score132.9
Seed ortholog evalue6.6e-29
Seed eggNOG ortholog2880.D8LFH3
KEGG rclassRC00059,RC00451
KEGG koko:K01201
KEGG ReactionR01498
KEGG Pathwayko00511,ko00600,ko01100,ko04142,map00511,map00600,map01100,map04142
GOsGO:0000323,GO:0003008,GO:0003674,GO:0003824,GO:0004348,GO:0004553,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005773,GO:0006629,GO:0006643,GO:0006664,GO:0006665,GO:0006672,GO:0006677,GO:0006678,GO:0006680,GO:0006687,GO:0006807,GO:0006950,GO:0006986,GO:0007275,GO:0007568,GO:0007610,GO:0007611,GO:0007613,GO:0007626,GO:0008150,GO:0008152,GO:0008340,GO:0008344,GO:0009056,GO:0009987,GO:0010033,GO:0010259,GO:0016042,GO:0016787,GO:0016798,GO:0019377,GO:0019725,GO:0030149,GO:0030534,GO:0032501,GO:0032502,GO:0033554,GO:0034620,GO:0034641,GO:0035966,GO:0035967,GO:0042221,GO:0042592,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044424,GO:0044444,GO:0044464,GO:0046466,GO:0046477,GO:0046479,GO:0046514,GO:0048856,GO:0050877,GO:0050890,GO:0050896,GO:0051716,GO:0060249,GO:0065007,GO:0065008,GO:0070050,GO:0070887,GO:0071310,GO:0071704,GO:1901135,GO:1901136,GO:1901564,GO:1901565,GO:1901575,GO:1903509
EggNOG free text desc.glucosylceramidase activity
EggNOG OGsCOG5520@1,KOG2566@2759
Ec32 ortholog descriptionBeta-glucosidase, family GH30
Ec32 orthologEc-04_002190.2
EC3.2.1.45
COG Functional cat.M
CAZyGH30
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons1
Model size234
Cds size234
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929244.6040375-CDS-H-canaliculatus_F_contig15004:2111..23451622929244.6040375-CDS-H-canaliculatus_F_contig15004:2111..2345Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15004 2112..2345 -
1696845733.5291429-CDS-H-canaliculatus_F_contig15004:2111..23451696845733.5291429-CDS-H-canaliculatus_F_contig15004:2111..2345Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15004 2112..2345 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig15004.3777.1prot_H-canaliculatus_F_contig15004.3777.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig15004 2112..2345 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig15004.3777.1

>prot_H-canaliculatus_F_contig15004.3777.1 ID=prot_H-canaliculatus_F_contig15004.3777.1|Name=mRNA_H-canaliculatus_F_contig15004.3777.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=78bp
GSIVSSSSGRCMTAGWPFFTGVALKMSKGSRERYGKEYAVVVLNEAEEPV
EFDLSFPAEGFVVRAIIGPRSIQTILA*
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mRNA from alignment at H-canaliculatus_F_contig15004:2112..2345-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig15004.3777.1 ID=mRNA_H-canaliculatus_F_contig15004.3777.1|Name=mRNA_H-canaliculatus_F_contig15004.3777.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=234bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15004:2112..2345- (Hapterophycus canaliculatus Oshoro5f female)
GGAAGCATCGTGTCCTCTTCCTCCGGCCGCTGCATGACCGCCGGGTGGCC
CTTCTTCACGGGGGTGGCCCTCAAGATGAGCAAGGGCTCCCGGGAGCGCT
ACGGGAAGGAGTACGCCGTGGTGGTGCTCAACGAGGCCGAGGAGCCGGTG
GAGTTCGACCTTTCCTTCCCCGCGGAGGGCTTCGTGGTCCGAGCGATCAT
CGGCCCCCGCTCCATCCAAACGATCCTCGCCTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig15004:2112..2345-

>mRNA_H-canaliculatus_F_contig15004.3777.1 ID=mRNA_H-canaliculatus_F_contig15004.3777.1|Name=mRNA_H-canaliculatus_F_contig15004.3777.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=468bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15004:2112..2345- (Hapterophycus canaliculatus Oshoro5f female)
GGAAGCATCGTGTCCTCTTCCTCCGGCCGCTGCATGACCGCCGGGTGGCC
CTTCTTCACGGGGGTGGCCCTCAAGATGAGCAAGGGCTCCCGGGAGCGCT
ACGGGAAGGAGTACGCCGTGGTGGTGCTCAACGAGGCCGAGGAGCCGGTG
GAGTTCGACCTTTCCTTCCCCGCGGAGGGCTTCGTGGTCCGAGCGATCAT
CGGCCCCCGCTCCATCCAAACGATCCTCGCCTGAGGAAGCATCGTGTCCT
CTTCCTCCGGCCGCTGCATGACCGCCGGGTGGCCCTTCTTCACGGGGGTG
GCCCTCAAGATGAGCAAGGGCTCCCGGGAGCGCTACGGGAAGGAGTACGC
CGTGGTGGTGCTCAACGAGGCCGAGGAGCCGGTGGAGTTCGACCTTTCCT
TCCCCGCGGAGGGCTTCGTGGTCCGAGCGATCATCGGCCCCCGCTCCATC
CAAACGATCCTCGCCTGA
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