mRNA_H-canaliculatus_F_contig15001.3775.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig15001.3775.1
Unique NamemRNA_H-canaliculatus_F_contig15001.3775.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig15001.3775.1 vs. uniprot
Match: D8LG61_ECTSI (Hist_deacetyl domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG61_ECTSI)

HSP 1 Score: 142 bits (357), Expect = 5.390e-38
Identity = 72/84 (85.71%), Postives = 77/84 (91.67%), Query Frame = 1 
Query:    1 VPFTPMVQEQLLKKGHTDVKPKDTCDTSFSK----AGSLKAARRAAGAVTHAVDCVVAGKNRNAFCAVRPPGHHAGSNGLLEDS 240
            VPFTPMVQ+ LLKKG TDVKPKDTCDTSFSK    AGSLKAARRAAGAVTHAVD V+AGKNRNAFCAVRPPGHHAG+NGL+E+S
Sbjct:  158 VPFTPMVQQHLLKKGQTDVKPKDTCDTSFSKGKYKAGSLKAARRAAGAVTHAVDRVLAGKNRNAFCAVRPPGHHAGANGLIENS 241
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BLAST of mRNA_H-canaliculatus_F_contig15001.3775.1 vs. uniprot
Match: D8LG60_ECTSI (Histone deactylase of possible bacterial origin with ankyrin repeats at the N-terminus n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG60_ECTSI)

HSP 1 Score: 142 bits (357), Expect = 1.700e-37
Identity = 72/84 (85.71%), Postives = 77/84 (91.67%), Query Frame = 1 
Query:    1 VPFTPMVQEQLLKKGHTDVKPKDTCDTSFSK----AGSLKAARRAAGAVTHAVDCVVAGKNRNAFCAVRPPGHHAGSNGLLEDS 240
            VPFTPMVQ+ LLKKG TDVKPKDTCDTSFSK    AGSLKAARRAAGAVTHAVD V+AGKNRNAFCAVRPPGHHAG+NGL+E+S
Sbjct: 1782 VPFTPMVQQHLLKKGQTDVKPKDTCDTSFSKGKYKAGSLKAARRAAGAVTHAVDRVLAGKNRNAFCAVRPPGHHAGANGLIENS 1865
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BLAST of mRNA_H-canaliculatus_F_contig15001.3775.1 vs. uniprot
Match: A0A7S2EL93_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EL93_TRICV)

HSP 1 Score: 104 bits (260), Expect = 2.620e-27
Identity = 56/77 (72.73%), Postives = 62/77 (80.52%), Query Frame = 1 
Query:    1 VPFTPMVQEQLLKKGHTDVKPKDTCDTSFSKAGSLKAARRAAGAVTHAVDCVVAGKNRNAFCAVRPPGHHAGSNGLL 231
            VPFTPMVQ+ ++K     VK  D  DTSFS AGSL+AARRAAGAV HAVDCV+ G+NRNAFC VRPPGHHAG NGLL
Sbjct:   37 VPFTPMVQKTIMKD--ITVKKGDHSDTSFS-AGSLRAARRAAGAVQHAVDCVLVGRNRNAFCVVRPPGHHAGVNGLL 110
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BLAST of mRNA_H-canaliculatus_F_contig15001.3775.1 vs. uniprot
Match: A0A7S2L2R4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2L2R4_9STRA)

HSP 1 Score: 108 bits (270), Expect = 9.380e-26
Identity = 57/80 (71.25%), Postives = 64/80 (80.00%), Query Frame = 1 
Query:    1 VPFTPMVQEQLLKKGHTDVKPKDTCDTSFSKAGSLKAARRAAGAVTHAVDCVVAGKNRNAFCAVRPPGHHAGSNGLLEDS 240
            VPFTPMVQ ++LK+  T  K  D  DT+FS  GSLKAARRAAGAV HAVDCV+ G+NRNAFC VRPPGHHAG NGLL D+
Sbjct:  826 VPFTPMVQRKILKEEKT--KDNDHSDTAFS-VGSLKAARRAAGAVQHAVDCVLVGRNRNAFCVVRPPGHHAGINGLLSDA 902
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BLAST of mRNA_H-canaliculatus_F_contig15001.3775.1 vs. uniprot
Match: A0A1Z5JSY0_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JSY0_FISSO)

HSP 1 Score: 107 bits (266), Expect = 3.260e-25
Identity = 54/78 (69.23%), Postives = 61/78 (78.21%), Query Frame = 1 
Query:    1 VPFTPMVQEQLLKKGHTDVKPKDTCDTSFSKAGSLKAARRAAGAVTHAVDCVVAGKNRNAFCAVRPPGHHAGSNGLLE 234
            VPFTP+VQ  ++K   + VK     DTSFS  GSLKAARRAAG+V HAVDCV+ G+NRNAFC VRPPGHHAG NGLLE
Sbjct:  795 VPFTPLVQRTMIKVDESSVKLSANSDTSFSS-GSLKAARRAAGSVQHAVDCVLVGRNRNAFCVVRPPGHHAGINGLLE 871
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BLAST of mRNA_H-canaliculatus_F_contig15001.3775.1 vs. uniprot
Match: A0A836C9L4_9STRA (Hist_deacetyl domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9L4_9STRA)

HSP 1 Score: 106 bits (265), Expect = 3.270e-25
Identity = 57/78 (73.08%), Postives = 65/78 (83.33%), Query Frame = 1 
Query:    1 VPFTPMVQEQLLKKGHTDVKPKDTCDTSFSKAGSLKAARRAAGAVTHAVDCVVAGKNRNAFCAVRPPGHHAGSNGLLE 234
            VPFTPMVQ  L++K   +VKP + CDTSFS AGSL AARRAAGAV  AVD V+AG++RNAFCAVRPPGHHAG +GLLE
Sbjct:  171 VPFTPMVQRDLMRKA--EVKPHEFCDTSFS-AGSLGAARRAAGAVVAAVDSVLAGRHRNAFCAVRPPGHHAGPDGLLE 245
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BLAST of mRNA_H-canaliculatus_F_contig15001.3775.1 vs. uniprot
Match: B7FXN5_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FXN5_PHATC)

HSP 1 Score: 105 bits (263), Expect = 8.290e-25
Identity = 54/78 (69.23%), Postives = 62/78 (79.49%), Query Frame = 1 
Query:    1 VPFTPMVQEQLLKKGHTDVKPKDTCDTSFSKAGSLKAARRAAGAVTHAVDCVVAGKNRNAFCAVRPPGHHAGSNGLLE 234
            VPFTP+VQ  L+K   + +K     DTSFS AGSL+AARRAAGAV HAVDCV+ G+NRNAFC VRPPGHHAG NGLL+
Sbjct:  786 VPFTPLVQRSLIKVDESRIKLGVNSDTSFS-AGSLRAARRAAGAVQHAVDCVLVGRNRNAFCVVRPPGHHAGINGLLD 862
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BLAST of mRNA_H-canaliculatus_F_contig15001.3775.1 vs. uniprot
Match: A0A448YY97_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YY97_9STRA)

HSP 1 Score: 105 bits (261), Expect = 1.550e-24
Identity = 54/80 (67.50%), Postives = 62/80 (77.50%), Query Frame = 1 
Query:    1 VPFTPMVQEQLLKKGHTDVKPKDTCDTSFSKAGSLKAARRAAGAVTHAVDCVVAGKNRNAFCAVRPPGHHAGSNGLLEDS 240
            VPFTPMV   + K   + +K  D  DTSFS AGSL+AARRAAGAV HAVDCV+ G++RNAFC VRPPGHHAG NGLL +S
Sbjct:  866 VPFTPMVLRSITKAQESSIKISDHSDTSFS-AGSLRAARRAAGAVQHAVDCVLVGRHRNAFCIVRPPGHHAGINGLLGES 944
[Close]
BLAST of mRNA_H-canaliculatus_F_contig15001.3775.1 vs. uniprot
Match: B8C5L2_THAPS (Histone deacetylase n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C5L2_THAPS)

HSP 1 Score: 104 bits (260), Expect = 2.090e-24
Identity = 56/80 (70.00%), Postives = 63/80 (78.75%), Query Frame = 1 
Query:    1 VPFTPMVQEQLLKKGHTDVKPKDTCDTSFSKAGSLKAARRAAGAVTHAVDCVVAGKNRNAFCAVRPPGHHAGSNGLLEDS 240
            VPFTPMVQ +++K G    K     DTSFS AGSLKAARRAAGAV HAVDCV+ G+NRNAFC VRPPGHHAG NGLL ++
Sbjct:  514 VPFTPMVQRKVMK-GAVVAKEPGHSDTSFS-AGSLKAARRAAGAVQHAVDCVLVGRNRNAFCVVRPPGHHAGINGLLSNA 591
[Close]
BLAST of mRNA_H-canaliculatus_F_contig15001.3775.1 vs. uniprot
Match: A0A6S8HTR1_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A6S8HTR1_9STRA)

HSP 1 Score: 104 bits (260), Expect = 2.110e-24
Identity = 54/78 (69.23%), Postives = 61/78 (78.21%), Query Frame = 1 
Query:    1 VPFTPMVQEQLLKKGHTDVKPKDTCDTSFSKAGSLKAARRAAGAVTHAVDCVVAGKNRNAFCAVRPPGHHAGSNGLLE 234
            VPFTPMVQ  ++K     VK     DT+FS AGSL+AARRAAGAV HAVDCV+ G+NRNAFC VRPPGHHAG NGLL+
Sbjct:  755 VPFTPMVQRTMIKINEEHVKLGVNSDTAFS-AGSLRAARRAAGAVQHAVDCVLVGRNRNAFCVVRPPGHHAGVNGLLD 831
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig15001.3775.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LG61_ECTSI5.390e-3885.71Hist_deacetyl domain-containing protein n=1 Tax=Ec... [more]
D8LG60_ECTSI1.700e-3785.71Histone deactylase of possible bacterial origin wi... [more]
A0A7S2EL93_TRICV2.620e-2772.73Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A7S2L2R4_9STRA9.380e-2671.25Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A1Z5JSY0_FISSO3.260e-2569.23Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A836C9L4_9STRA3.270e-2573.08Hist_deacetyl domain-containing protein n=1 Tax=Tr... [more]
B7FXN5_PHATC8.290e-2569.23Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A448YY97_9STRA1.550e-2467.50Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
B8C5L2_THAPS2.090e-2470.00Histone deacetylase n=1 Tax=Thalassiosira pseudona... [more]
A0A6S8HTR1_9STRA2.110e-2469.23Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig15001contigH-canaliculatus_F_contig15001:1282..2114 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score131.0
Seed ortholog evalue2.4e-28
Seed eggNOG ortholog2880.D8LG60
EggNOG free text desc.NAD-dependent histone deacetylase activity (H3-K14 specific)
EggNOG OGsCOG0123@1,COG0666@1,KOG0724@1,KOG0724@2759,KOG1343@2759,KOG4177@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size240
Cds size225
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig15001.3775.1prot_H-canaliculatus_F_contig15001.3775.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig15001 1297..2114 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929244.4632566-UTR-H-canaliculatus_F_contig15001:1281..12961622929244.4632566-UTR-H-canaliculatus_F_contig15001:1281..1296Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig15001 1282..1296 +
1696845733.4555092-UTR-H-canaliculatus_F_contig15001:1281..12961696845733.4555092-UTR-H-canaliculatus_F_contig15001:1281..1296Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig15001 1282..1296 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929244.4762094-CDS-H-canaliculatus_F_contig15001:1296..13751622929244.4762094-CDS-H-canaliculatus_F_contig15001:1296..1375Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15001 1297..1375 +
1696845733.4679236-CDS-H-canaliculatus_F_contig15001:1296..13751696845733.4679236-CDS-H-canaliculatus_F_contig15001:1296..1375Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15001 1297..1375 +
1622929244.4918692-CDS-H-canaliculatus_F_contig15001:1968..21141622929244.4918692-CDS-H-canaliculatus_F_contig15001:1968..2114Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15001 1969..2114 +
1696845733.482626-CDS-H-canaliculatus_F_contig15001:1968..21141696845733.482626-CDS-H-canaliculatus_F_contig15001:1968..2114Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15001 1969..2114 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig15001.3775.1

>prot_H-canaliculatus_F_contig15001.3775.1 ID=prot_H-canaliculatus_F_contig15001.3775.1|Name=mRNA_H-canaliculatus_F_contig15001.3775.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=75bp
MVQEQLLKKGHTDVKPKDTCDTSFSKAGSLKAARRAAGAVTHAVDCVVAG
KNRNAFCAVRPPGHHAGSNGLLEDS
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mRNA from alignment at H-canaliculatus_F_contig15001:1282..2114+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig15001.3775.1 ID=mRNA_H-canaliculatus_F_contig15001.3775.1|Name=mRNA_H-canaliculatus_F_contig15001.3775.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=833bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15001:1282..2114+ (Hapterophycus canaliculatus Oshoro5f female)
GTGCCCTTCACCCCGATGGTGCAGGAGCAGCTGCTCAAGAAGGGACACAC
GGATGTCAAGCCCAAGGACACCTGCGACACCTCCTTTTCCAAGGGTGAGG
GACGGTTGGCCGTTTCCGGTCGTCCCTCTTTCTCCAAGTCCCGACCACGC
TTGCTTCGGTCGCCGCTGCCTCTGTTGTTGCTTCGGGCGTCGCCGCTGCG
GGTGTCGTAGCTCTTATCGTCGCGTGTAGCGAGCGTTGATGCGTTGAGAT
GCCTTTGTCGTCCCCTGTCTTGCTTCCGTGGTTGCCGTTGTTGCCGTCGC
TGTTGTCGCCATCCTTCTTCCGCCTCGTTGTTTTTTTTTCGGGGAATGTT
TCGCCCTGCTACTATAGCAAGGCCTGGATGTTCTCGCCCACAACAACCAA
GGTGTGTTTTGTGTGCGCCAATCCAGGATGCCCCGCGTCCGAGTCTTCGC
GATTTGGCGGAAGGAGTTCCTGGCTTTGGCGATTTCCCTCCTGCCGCTCT
CTTCATTTGCTTTTCCTCAGCAGCCCCCTCTGTGCCACGCCGTTCCTTCC
TTTCATTTTTTGTCCCTTTTGATTTAACCGTCTTCGGGGTTGTTTCGCTG
ACACTTAAGTTTTTCGCCCAAATCTTGCTTCCCATGTTTATCGCCCTCGA
CGGACGGAACCCTGGACGGCCTCGTGGCTTGGGCGAGCAGGGTCTCTGAA
GGCGGCAAGGCGAGCAGCCGGGGCGGTGACTCACGCGGTGGACTGCGTGG
TGGCGGGGAAGAACCGGAACGCCTTCTGCGCCGTGCGGCCGCCAGGCCAC
CACGCGGGGTCCAATGGGCTGCTGGAAGACTCG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig15001:1282..2114+

>mRNA_H-canaliculatus_F_contig15001.3775.1 ID=mRNA_H-canaliculatus_F_contig15001.3775.1|Name=mRNA_H-canaliculatus_F_contig15001.3775.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=450bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15001:1282..2114+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGTGCAGGAGCAGCTGCTCAAGAAGGGACACACGGATGTCAAGCCCAA
GGACACCTGCGACACCTCCTTTTCCAAGGATGGTGCAGGAGCAGCTGCTC
AAGAAGGGACACACGGATGTCAAGCCCAAGGACACCTGCGACACCTCCTT
TTCCAAGGCAGGGTCTCTGAAGGCGGCAAGGCGAGCAGCCGGGGCGGTGA
CTCACGCGGTGGACTGCGTGGTGGCGGGGAAGAACCGGAACGCCTTCTGC
GCCGTGCGGCCGCCAGGCCACCACGCGGGGTCCAATGGGCTGCTGGAAGA
CTCGCAGGGTCTCTGAAGGCGGCAAGGCGAGCAGCCGGGGCGGTGACTCA
CGCGGTGGACTGCGTGGTGGCGGGGAAGAACCGGAACGCCTTCTGCGCCG
TGCGGCCGCCAGGCCACCACGCGGGGTCCAATGGGCTGCTGGAAGACTCG
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