mRNA_H-canaliculatus_F_contig1500.3771.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1500.3771.1
Unique NamemRNA_H-canaliculatus_F_contig1500.3771.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1500.3771.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1500contigH-canaliculatus_F_contig1500:9028..10643 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size313
Cds size210
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1500.3771.1prot_H-canaliculatus_F_contig1500.3771.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1500 10063..10643 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929243.7163746-UTR-H-canaliculatus_F_contig1500:9027..91141622929243.7163746-UTR-H-canaliculatus_F_contig1500:9027..9114Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1500 9028..9114 +
1696845733.081703-UTR-H-canaliculatus_F_contig1500:9027..91141696845733.081703-UTR-H-canaliculatus_F_contig1500:9027..9114Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1500 9028..9114 +
1622929243.7316225-UTR-H-canaliculatus_F_contig1500:10046..100621622929243.7316225-UTR-H-canaliculatus_F_contig1500:10046..10062Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1500 10047..10062 +
1696845733.0913806-UTR-H-canaliculatus_F_contig1500:10046..100621696845733.0913806-UTR-H-canaliculatus_F_contig1500:10046..10062Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1500 10047..10062 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929243.7473166-CDS-H-canaliculatus_F_contig1500:10062..101651622929243.7473166-CDS-H-canaliculatus_F_contig1500:10062..10165Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1500 10063..10165 +
1696845733.1028843-CDS-H-canaliculatus_F_contig1500:10062..101651696845733.1028843-CDS-H-canaliculatus_F_contig1500:10062..10165Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1500 10063..10165 +
1622929243.7662919-CDS-H-canaliculatus_F_contig1500:10536..106431622929243.7662919-CDS-H-canaliculatus_F_contig1500:10536..10643Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1500 10537..10643 +
1696845733.111687-CDS-H-canaliculatus_F_contig1500:10536..106431696845733.111687-CDS-H-canaliculatus_F_contig1500:10536..10643Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1500 10537..10643 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1500.3771.1

>prot_H-canaliculatus_F_contig1500.3771.1 ID=prot_H-canaliculatus_F_contig1500.3771.1|Name=mRNA_H-canaliculatus_F_contig1500.3771.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=70bp
MRQMRCTVRGCRFFLADRTAYSNGLDPALPLARTGFFLEDRRRTLGVPAE
LLSRMSRVKQRGRPEWPTP*
back to top

mRNA from alignment at H-canaliculatus_F_contig1500:9028..10643+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1500.3771.1 ID=mRNA_H-canaliculatus_F_contig1500.3771.1|Name=mRNA_H-canaliculatus_F_contig1500.3771.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1616bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1500:9028..10643+ (Hapterophycus canaliculatus Oshoro5f female)
GCGACGTGGATGATTTGTCCTCTGGAAGTGGGGCTGCGAGGGTGGCATCA
CCCTTATCGATCGACCACTTGACGGTTATAACCAAAAGTAAGTGTCATGA
GATGCGATGTGCACGGAAACAGATACTCGTATACAAAAGCGGGTCATAAG
AAATATCATATCAGATGGTGTGATCGGAATGTGTGTGGTCCTCAATTGAA
TTTCCATCTCACGGTCGTAATGTGGCGACCACAACCTACCCGCCGAACAA
CGGTGAACTTGTACATGCACCCGCTTTCGGGTGAGTAAGCGAGAAAAACG
GACCCAGACACCCACAGTAGCGCCCAACGATGAATCGTTACAAAAATACG
AAGTACTCCGGTAGAGGGAAAAATGAAGATCGAGGTAAAAAGTGCAGTCA
ATCGTGAACATTGGAAGGCACGGAACATCGGAGAGTTGACTCACACAGAA
GAAACTAGCAACTTCTACCGTACAGCGTGCTGTTTGGCCGGGGGAGTCAG
AAGCTCAGCCAGAAGCATGCGTGACCAGGCACAAAAACTAAAATAAATAA
CAGCAACGCGACTTGTTTCAGGCGTAATAAGAAAACCGCATTCGTGATTT
GGAACTGGCGGATACCCTCCAGCGCGCCTTCAAGGCTACTCTGGCGGTGC
CGTGCCTAGCCTTCACTCGACTGCGATGTCAGCAGCCGGTTGAATTGTTC
AGGCGCCCAGGGGGGCTCGGGGCTCTGATGTTGCCGCTGACCAGAGGGTC
CATTTTGCAAGTATGCTGGTGTCGTGTGATGTACTGGCGGTGCACGTGTT
CACACGATGTTCCGGCCGTTATCATGTGTGGACAGGAGACAGGAGAGACA
AGAGGCCTTATTCCACATCCATCATACCTCGTACCTATACACCGTCGTTT
CTTCCAGTTGAGGCTTACAGTACGATAAACCGAAAAATAATTCCCGGGAG
CTTTTTCGCCCTGTAACCTTCAAGATGTACGCTGTACTAAATCTCCTCCG
TGGCGTTGTCCATGCTTAGGGTTAAGTCTACCGGCATGCGGCAAATGAGG
TGCACCGTCCGTGGTTGCAGATTCTTCCTTGCCGACCGTACGGCATATTC
AAACGGTTTGGATCCTGCTTTACCTCTCGCGCGGACAGGTAAACCAAGAT
GTAGATCATACAGAGATGTGAGGGATCGTATTTCGTTCGAATACTTGCAC
TGCTTTTTTGAAGAGTTTTTTCATGCGCATGTAACTGCTGTCTCCGGAGG
GATATGCGGAAACTTCGCAAGATCATGGAACGGATGGAAGGCCGACGCAG
TGTTTTGCTCGCGGCAGTTGCCCTGCCCTGAGGATGTCCGCGTGATAACT
GCATGCTTACTGCAGGAGACTTCTCCACCGCTTGTGGTGCTCGGCCGCTA
CCGCATCTGTCCTGAGTGGCTGTACACTTCCCAAGAGCAAATAGGTTGCC
GAGAGGCAACAAGCGGCCTGCTGCTAGCGCTCTGAAAATTTGAATTTCAC
GTGTCACAGGTTTTTTCTTGGAAGACAGACGTCGTACACTAGGGGTACCT
GCTGAGCTCCTCTCAAGGATGTCTCGCGTGAAACAGCGAGGACGACCGGA
GTGGCCCACACCATGA
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1500:9028..10643+

>mRNA_H-canaliculatus_F_contig1500.3771.1 ID=mRNA_H-canaliculatus_F_contig1500.3771.1|Name=mRNA_H-canaliculatus_F_contig1500.3771.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=420bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1500:9028..10643+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCGGCAAATGAGGTGCACCGTCCGTGGTTGCAGATTCTTCCTTGCCGA
CCGTACGGCATATTCAAACGGTTTGGATCCTGCTTTACCTCTCGCGCGGA
CAGATGCGGCAAATGAGGTGCACCGTCCGTGGTTGCAGATTCTTCCTTGC
CGACCGTACGGCATATTCAAACGGTTTGGATCCTGCTTTACCTCTCGCGC
GGACAGGTTTTTTCTTGGAAGACAGACGTCGTACACTAGGGGTACCTGCT
GAGCTCCTCTCAAGGATGTCTCGCGTGAAACAGCGAGGACGACCGGAGTG
GCCCACACCATGAGTTTTTTCTTGGAAGACAGACGTCGTACACTAGGGGT
ACCTGCTGAGCTCCTCTCAAGGATGTCTCGCGTGAAACAGCGAGGACGAC
CGGAGTGGCCCACACCATGA
back to top