mRNA_H-canaliculatus_F_contig15.3761.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig15.3761.1
Unique NamemRNA_H-canaliculatus_F_contig15.3761.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig15.3761.1 vs. uniprot
Match: D7FYS3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYS3_ECTSI)

HSP 1 Score: 155 bits (393), Expect = 1.560e-45
Identity = 79/111 (71.17%), Postives = 86/111 (77.48%), Query Frame = 1
Query:   10 TPTTTATPPSINEVQVSGRGVLSLECDWAVGIGGGLWSTGILLTEHLAKHGALYDNVFRGKRVLELGSGTGLAGLAAARFGPPLEVVITDLESHVDICRRNAGRDAATGAQ 342
            T  TT +   + EV++ GR     E +W VGIGGGLWSTGILLTEHLAKH ALYD VF+GKRVLELGSGTGL GLAAARFGPPLEVVITDLESHVDIC+RN       GAQ
Sbjct:    5 TAATTTSTSEVKEVELDGRXXXXXEVNWGVGIGGGLWSTGILLTEHLAKHAALYDRVFKGKRVLELGSGTGLVGLAAARFGPPLEVVITDLESHVDICKRNVASQDDMGAQ 115          
BLAST of mRNA_H-canaliculatus_F_contig15.3761.1 vs. uniprot
Match: A0A2D4BZQ6_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BZQ6_PYTIN)

HSP 1 Score: 91.3 bits (225), Expect = 4.110e-20
Identity = 43/80 (53.75%), Postives = 56/80 (70.00%), Query Frame = 1
Query:   73 LSLECDWAVGIGGGLWSTGILLTEHLAKHGALYDNVFRGKRVLELGSGTGLAGLAAARFGPPLEVVITDLESHVDICRRN 312
            L+ +CDW VGIGG +W++G +LT HL  H   Y  +F+GK V+ELGSGTG  GL AA    P +VV+TDL SH+D  +RN
Sbjct:   34 LAFQCDWDVGIGGSVWTSGEILTAHLEMHQEQYREIFQGKSVVELGSGTGYVGLLAAACFQPAQVVLTDLASHLDCMQRN 113          
BLAST of mRNA_H-canaliculatus_F_contig15.3761.1 vs. uniprot
Match: A0A1V9ZYN4_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZYN4_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 7.500e-20
Identity = 50/99 (50.51%), Postives = 65/99 (65.66%), Query Frame = 1
Query:   61 GRGVLSLECDWAVGIGGGLWSTGILLTEHLAKHGALYDNVFRGKRVLELGSGTGLAGLAAARFGPPLEVVITDLESHVDICRRNAGRDAATGAQARLPS 357
            G   + LEC+W VGIGG LW++G LL ++L+++G +   +  G RVLELGSGTGL GLA A FGP   VV+TDLE+HV     N  R+A      R+PS
Sbjct:   10 GDSSIELECNWDVGIGGSLWTSGRLLVDYLSRNGVVRQEI-EGTRVLELGSGTGLVGLAVALFGPA-SVVLTDLETHVAALENNVKRNAG-----RIPS 101          
BLAST of mRNA_H-canaliculatus_F_contig15.3761.1 vs. uniprot
Match: A0A024GDA2_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GDA2_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 2.520e-19
Identity = 41/84 (48.81%), Postives = 57/84 (67.86%), Query Frame = 1
Query:   73 LSLECDWAVGIGGGLWSTGILLTEHLAKHGALYDNVFRGKRVLELGSGTGLAGLAAARFGPPLEVVITDLESHVDICRRNAGRD 324
            L  ECDW+VGIGG +W++G +LT +  +H    D +F+GKRV+ELGSGTG+ GL  A    P +V++TDL S +D  R N  R+
Sbjct:   23 LLFECDWSVGIGGSVWTSGEILTSYFKRHREHLDTLFQGKRVVELGSGTGIVGLTCAACFQPSQVILTDLSSQLDCLRNNVTRN 106          
BLAST of mRNA_H-canaliculatus_F_contig15.3761.1 vs. uniprot
Match: A0A8K1C330_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C330_PYTOL)

HSP 1 Score: 85.5 bits (210), Expect = 7.620e-18
Identity = 40/85 (47.06%), Postives = 57/85 (67.06%), Query Frame = 1
Query:   73 LSLECDWAVGIGGGLWSTGILLTEHLAKHGALYDNVFRGKRVLELGSGTGLAGLAAARFGPPLEVVITDLESHVDICRRNAGRDA 327
            L  +CDW +GIGG +W++G +LT HLA     Y ++F+ K V+ELGSGTG  GL  A    P +V++TDL+SHV+  + N  R+A
Sbjct:   40 LQFQCDWDIGIGGSVWTSGEILTAHLASQQEHYRSIFQDKVVVELGSGTGFVGLMTAVCFQPSDVIVTDLQSHVECLQHNITRNA 124          
BLAST of mRNA_H-canaliculatus_F_contig15.3761.1 vs. uniprot
Match: K3WJ30_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WJ30_GLOUD)

HSP 1 Score: 85.1 bits (209), Expect = 8.560e-18
Identity = 43/87 (49.43%), Postives = 53/87 (60.92%), Query Frame = 1
Query:   70 VLSLECDWAVGIGGGLWSTGILLTEHLAKHGALYDNVFRGKRVLELGSGTGLAGLAAARFGPPLEVVITDLESHVDICRRNAGRDAA 330
            VL   CDW +GIGG +W++G +L EHL    A Y  +F+GK VLELGSGTG  GL  A    P  V +TDL SHV    RN   +A+
Sbjct:   37 VLRFHCDWDIGIGGSIWTSGQILAEHLQSQQARYRALFQGKNVLELGSGTGYVGLMTAVCFEPANVFLTDLASHVACLERNVALNAS 123          
BLAST of mRNA_H-canaliculatus_F_contig15.3761.1 vs. uniprot
Match: A0A024U3Y6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U3Y6_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 3.690e-17
Identity = 44/94 (46.81%), Postives = 62/94 (65.96%), Query Frame = 1
Query:   49 VQVSGRGVLSLECDWAVGIGGGLWSTGILLTEHLAKHGALYDNVFRGKRVLELGSGTGLAGLAAARFGPPLEVVITDLESHVDICRRNAGRDAA 330
            V  +    + LECDW VGIGG LW++G LL +++A++     ++  G+ VLELGSGTGL GLA A  GP   V++TDL++HV    RN  R+A+
Sbjct:   15 VSTTSSACIELECDWGVGIGGSLWTSGRLLVDYMARNTHEQKDLV-GRTVLELGSGTGLVGLAMAHMGPS-RVIVTDLDTHVASMERNLERNAS 106          
BLAST of mRNA_H-canaliculatus_F_contig15.3761.1 vs. uniprot
Match: A0A0N7L6P2_PLAHL (Putative N2,N2-dimethylguanosine tRNA methyltransferase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L6P2_PLAHL)

HSP 1 Score: 83.6 bits (205), Expect = 6.240e-17
Identity = 42/97 (43.30%), Postives = 58/97 (59.79%), Query Frame = 1
Query:   70 VLSLECDWAVGIGGGLWSTGILLTEHLAKHGALYDNVFRGKRVLELGSGTGLAGLAAARFGPPLEVVITDLESHVDICRRNAGRDAA---TGAQARL 351
            +L  EC+W  GIGG +W++G+LL  HL  +   Y  +F G RV+E+GSGTG  GL  A    P  V +TDL +HV+  +RN  R+A    TG Q  +
Sbjct:   58 MLGFECNWKPGIGGSIWTSGVLLAAHLELYREYYRTIFEGARVVEIGSGTGYVGLMVAACFRPAHVYLTDLSTHVNGLQRNVERNARAVRTGVQVHV 154          
BLAST of mRNA_H-canaliculatus_F_contig15.3761.1 vs. uniprot
Match: A0A485KXL0_9STRA (Aste57867_13220 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KXL0_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 9.150e-17
Identity = 44/95 (46.32%), Postives = 64/95 (67.37%), Query Frame = 1
Query:   73 LSLECDWAVGIGGGLWSTGILLTEHLAKHGALYDNVFRGKRVLELGSGTGLAGLAAARFGPPLEVVITDLESHVDICRRNAGRDAATGAQARLPS 357
            + LEC+W VGIGG LW++G LL ++++++ A   +   G+ VLELGSGTGL GLA +  GP   V++TDL SHV+   RN  R+     ++R+PS
Sbjct:   25 IELECNWNVGIGGSLWTSGRLLVDYMSRN-APEQHALAGRTVLELGSGTGLVGLAMSLLGPT-RVILTDLHSHVESMERNLARN-----KSRIPS 112          
BLAST of mRNA_H-canaliculatus_F_contig15.3761.1 vs. uniprot
Match: A0A7R9UE36_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UE36_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 1.410e-16
Identity = 42/91 (46.15%), Postives = 55/91 (60.44%), Query Frame = 1
Query:   73 LSLECDWAVGIGGGLWSTGILLTEHLAKHGALYDNVFRGKRVLELGSGTGLAGLAAARFGPPLEVVITDLESHVDICRRNAGRDAATGAQA 345
            L LE DW+VGIGGG+WS+   L  H       Y     G+RVLELG+GTGLAG  AA   P  E+V++D+  HV + RRN  ++  T  Q+
Sbjct:   23 LQLELDWSVGIGGGVWSSAEQLVAHFEAQQETYRQTLHGRRVLELGAGTGLAGFGAALVSPLSELVLSDVGEHVTLLRRNVEQNFDTLTQS 113          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig15.3761.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYS3_ECTSI1.560e-4571.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A2D4BZQ6_PYTIN4.110e-2053.75Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A1V9ZYN4_9STRA7.500e-2050.51Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A024GDA2_9STRA2.520e-1948.81Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
A0A8K1C330_PYTOL7.620e-1847.06Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
K3WJ30_GLOUD8.560e-1849.43Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A024U3Y6_9STRA3.690e-1746.81Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A0N7L6P2_PLAHL6.240e-1743.30Putative N2,N2-dimethylguanosine tRNA methyltransf... [more]
A0A485KXL0_9STRA9.150e-1746.32Aste57867_13220 protein n=1 Tax=Aphanomyces stella... [more]
A0A7R9UE36_9STRA1.410e-1646.15Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig15contigH-canaliculatus_F_contig15:59575..60692 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score158.7
Seed ortholog evalue1.7e-36
Seed eggNOG ortholog2880.D7FYS3
Preferred nameEFM6
KEGG koko:K21804,ko:K21805
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0008152,GO:0008168,GO:0008757,GO:0016740,GO:0016741,GO:0032259,GO:0044424,GO:0044464
EggNOG free text desc.lysine N-methyltransferase activity
EggNOG OGsKOG2793@1,KOG2793@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03110
Hectar predicted targeting categoryother localisation
Exons3
Model size360
Cds size360
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig15.3761.1prot_H-canaliculatus_F_contig15.3761.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig15 59575..60692 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929241.6507726-CDS-H-canaliculatus_F_contig15:59574..597051622929241.6507726-CDS-H-canaliculatus_F_contig15:59574..59705Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15 59575..59705 -
1696845732.1572022-CDS-H-canaliculatus_F_contig15:59574..597051696845732.1572022-CDS-H-canaliculatus_F_contig15:59574..59705Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15 59575..59705 -
1622929241.6629422-CDS-H-canaliculatus_F_contig15:60111..602311622929241.6629422-CDS-H-canaliculatus_F_contig15:60111..60231Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15 60112..60231 -
1696845732.169047-CDS-H-canaliculatus_F_contig15:60111..602311696845732.169047-CDS-H-canaliculatus_F_contig15:60111..60231Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15 60112..60231 -
1622929241.6768804-CDS-H-canaliculatus_F_contig15:60583..606921622929241.6768804-CDS-H-canaliculatus_F_contig15:60583..60692Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15 60584..60692 -
1696845732.179895-CDS-H-canaliculatus_F_contig15:60583..606921696845732.179895-CDS-H-canaliculatus_F_contig15:60583..60692Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15 60584..60692 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig15.3761.1

>prot_H-canaliculatus_F_contig15.3761.1 ID=prot_H-canaliculatus_F_contig15.3761.1|Name=mRNA_H-canaliculatus_F_contig15.3761.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=120bp
AAATPTTTATPPSINEVQVSGRGVLSLECDWAVGIGGGLWSTGILLTEHL
AKHGALYDNVFRGKRVLELGSGTGLAGLAAARFGPPLEVVITDLESHVDI
CRRNAGRDAATGAQARLPS*
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mRNA from alignment at H-canaliculatus_F_contig15:59575..60692-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig15.3761.1 ID=mRNA_H-canaliculatus_F_contig15.3761.1|Name=mRNA_H-canaliculatus_F_contig15.3761.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1118bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15:59575..60692- (Hapterophycus canaliculatus Oshoro5f female)
GCAGCAGCGACGCCAACAACAACCGCAACACCACCATCCATAAACGAGGT CCAAGTTTCTGGCCGAGGAGTTTTAAGCTTGGAGTGCGATTGGGCCGTGG GCATTGGTGGTGAGTCGGGCATCGCCGCGCAGCTCCTGCTTTTGAACCTC CACAGGATTGCTTTACACAGTAGGTCAGGTGCCATCGAAGCACGTAGTCT CCGTCTCCGATCGTGTTGATTATTCCCCACAACCAACCACAATGCATGCA TACGCCCGTTCAGGTCGAGCGCGTTGCTTCTGTCCACCGGAGGGGTGGGC CCAAAGTGCATGAGGTTCGGCCGCATGCCGCGAAAAACGTGGAGAAATGA AACGGGAACATCCACGAACATCCATGAACATCCATGAACATCCATGAACA TCCAGGCTATCTGCCTTTCCCGTATCTAACCCACCGATCCCTCCCCCCGC TCCAACCCTAGGTGGCCTGTGGAGCACAGGTATTCTCTTGACCGAGCACC TCGCAAAGCACGGCGCTTTGTACGATAATGTGTTCAGAGGAAAGCGAGTC CTTGAATTGGGCTCCGGAACAGGTTTAGCGGGTGAGAAATGGTCGCGAGG AAGAAGATGCTGATTGGTCACTCCATCACCATTCAGCACTGTACTTCCAT TTGAACATAATATGGTACGGGGGCCGAAGAACAGGCCCGTAATTTGAAGG TGAACAAGTTGGCACGAAAGGATTTCCCACGTAGCGACGCACGGGGTGGC CAGATATGAACAATCGGTGTTCCTTTCTGTCGAGTTGTACGCCGTCTTTC AAACGGTGTCCTTCAACATCTGAAAGATCTATCATCCATGACCAAGTGTT GCATGATCGGCATATTTTCGCCTTCTGCCGATACCAGGATAAGGAGGTAG GTGCATCCCATTGTTTCCCCTCCTTGCTATTGCTGAGAGTGATTTGTCCT CTTTCCTCGCCGCCTCCTCTTGCTACCGGAAATAAAGGCCTTGCTGCGGC AAGGTTCGGGCCACCTCTCGAGGTCGTGATCACAGACTTGGAGAGCCACG TTGACATCTGCCGAAGAAACGCTGGTCGCGACGCTGCGACCGGCGCACAG GCACGTCTTCCTTCATGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig15:59575..60692-

>mRNA_H-canaliculatus_F_contig15.3761.1 ID=mRNA_H-canaliculatus_F_contig15.3761.1|Name=mRNA_H-canaliculatus_F_contig15.3761.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=720bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15:59575..60692- (Hapterophycus canaliculatus Oshoro5f female)
GCAGCAGCGACGCCAACAACAACCGCAACACCACCATCCATAAACGAGGT
CCAAGTTTCTGGCCGAGGAGTTTTAAGCTTGGAGTGCGATTGGGCCGTGG
GCATTGGTGGCAGCAGCGACGCCAACAACAACCGCAACACCACCATCCAT
AAACGAGGTCCAAGTTTCTGGCCGAGGAGTTTTAAGCTTGGAGTGCGATT
GGGCCGTGGGCATTGGTGGTGGCCTGTGGAGCACAGGTATTCTCTTGACC
GAGCACCTCGCAAAGCACGGCGCTTTGTACGATAATGTGTTCAGAGGAAA
GCGAGTCCTTGAATTGGGCTCCGGAACAGGTTTAGCGGGTGGCCTGTGGA
GCACAGGTATTCTCTTGACCGAGCACCTCGCAAAGCACGGCGCTTTGTAC
GATAATGTGTTCAGAGGAAAGCGAGTCCTTGAATTGGGCTCCGGAACAGG
TTTAGCGGGCCTTGCTGCGGCAAGGTTCGGGCCACCTCTCGAGGTCGTGA
TCACAGACTTGGAGAGCCACGTTGACATCTGCCGAAGAAACGCTGGTCGC
GACGCTGCGACCGGCGCACAGGCACGTCTTCCTTCATGAGCCTTGCTGCG
GCAAGGTTCGGGCCACCTCTCGAGGTCGTGATCACAGACTTGGAGAGCCA
CGTTGACATCTGCCGAAGAAACGCTGGTCGCGACGCTGCGACCGGCGCAC
AGGCACGTCTTCCTTCATGA
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