mRNA_H-canaliculatus_F_contig15.3760.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig15.3760.1
Unique NamemRNA_H-canaliculatus_F_contig15.3760.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig15.3760.1 vs. uniprot
Match: D7FYS3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYS3_ECTSI)

HSP 1 Score: 178 bits (452), Expect = 1.020e-54
Identity = 85/105 (80.95%), Postives = 94/105 (89.52%), Query Frame = 1
Query:    1 GLCSVRVEAYDWSGDVPSAVGAVPFDVILGTDVAYYEHLYAPFIRASALECTAGPDTLILLGVTRTDTGPAFFDALDEAGFVYDLVDQASHKGFGLFTVCRERPE 315
            GLCSVRVEAYDWS +VP  +G VPFDVIL TDVAYYEHLYAPF++A  LE TAG  TL+LLGVTRTDTGPAFFDALD+AGFVY+LVDQASHKGFGLFTV RE+P+
Sbjct:  116 GLCSVRVEAYDWSSEVPEELGEVPFDVILATDVAYYEHLYAPFVQA--LERTAGQHTLVLLGVTRTDTGPAFFDALDKAGFVYNLVDQASHKGFGLFTVQREQPD 218          
BLAST of mRNA_H-canaliculatus_F_contig15.3760.1 vs. uniprot
Match: A0A7R9UE36_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UE36_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 4.760e-20
Identity = 51/105 (48.57%), Postives = 69/105 (65.71%), Query Frame = 1
Query:   13 VRVEAYDWS-GDVPSAVGAVPFDVILGTDVAYYEHLYAPFIRASALECTAGPDTLILLGVTRTDTGPAFFDALDEAGFVY------DLVDQASHKGFGLFTVCRE 306
            VRVE +DW+  DV    G  PFDV++GTDVAY+E LY     A+A++ T  PD +++LGVTR+DTGP+FF  L + GF Y      D+  + ++  FGLFTV RE
Sbjct:  117 VRVETFDWTVEDVGHLDG--PFDVLIGTDVAYHESLYEDV--ANAIDRTLKPDGVVILGVTRSDTGPSFFRELVKRGFNYHRIRDEDMGGKHTNSSFGLFTVWRE 217          
BLAST of mRNA_H-canaliculatus_F_contig15.3760.1 vs. uniprot
Match: W7U3Q4_9STRA (Nicotinamide N-methyltransferase, putative n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U3Q4_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 1.490e-17
Identity = 49/112 (43.75%), Postives = 64/112 (57.14%), Query Frame = 1
Query:   13 VRVEAYDWSGDVPS--------AVGAVPFDVILGTDVAYYEHLYAPFIRASALECTAGPDTLILLGVTRTDTGPAFFDALDEAGFVYDLVDQASHK-------GFGLFTVCR 303
            +RV+ ++W  D  +        A+ A+PFDV++GTDVAY + LY P + A  L   +GP +LILLGVTRTDT P FF  L E GF Y L   A  +       GF L +V R
Sbjct:  149 IRVQEFNWLKDKETKNTDSKVKALCALPFDVVVGTDVAYCQELYGPVVHA--LCRLSGPHSLILLGVTRTDTNPRFFQLLQEEGFDYCLTPVADGESSCTVAGGFALLSVVR 258          
BLAST of mRNA_H-canaliculatus_F_contig15.3760.1 vs. uniprot
Match: A0A7S2XUY9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XUY9_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 1.950e-17
Identity = 47/105 (44.76%), Postives = 59/105 (56.19%), Query Frame = 1
Query:    1 GLCSVRVEAYDWSGDVPSAVGAVPFDVILGTDVAYYEHLYAPFIRASALECTAGPDTLILLGVTRTDTGPAFFDALDEAGFVY------DLVDQASHKGFGLFTV 297
            G C+V VE YDW    P      PFD I  TDVAY+E L+ P ++A  L+  +  +T+I LGVTR+DTGPAFF  L   GF Y      D  ++     FGLF V
Sbjct:    7 GNCNVLVEHYDWGKPCPHL--KPPFDFIFATDVAYFEELHDPLLQA--LDDCSDNNTVIYLGVTRSDTGPAFFKKLHLKGFSYYKIPDEDAGEKYKGSPFGLFLV 107          
BLAST of mRNA_H-canaliculatus_F_contig15.3760.1 vs. uniprot
Match: A0A7S1U640_9STRA (Hypothetical protein n=3 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U640_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 7.160e-17
Identity = 47/105 (44.76%), Postives = 63/105 (60.00%), Query Frame = 1
Query:   10 SVRVEAYDWS-GDVPSAVGAVPFDVILGTDVAYYEHLYAPFIRASALECTAGPDTLILLGVTRTDTGPAFFDALDEAGFVYDLVDQASHKG------FGLFTVCR 303
            SVRVE +DW+  D    +G   FDV++GTDVAY+E LY     A+A++ T   D +++LGVTR DTGP+FF A +  GF Y  VD++   G      F LF   R
Sbjct:  132 SVRVEEFDWAKADEVEHLGG-KFDVVVGTDVAYHEDLYDDV--AAAIDATTKDDGVVVLGVTRLDTGPSFFRAFEARGFTYHRVDESLMGGAHTKSSFALFLAWR 233          
BLAST of mRNA_H-canaliculatus_F_contig15.3760.1 vs. uniprot
Match: A0A7S0Y816_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0Y816_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 9.120e-10
Identity = 38/105 (36.19%), Postives = 54/105 (51.43%), Query Frame = 1
Query:   16 RVEAYDWSGDVP-SAVGAVPFDVILGTDVAYYEHLYAPFIRASALECTAGPDTLILLGVTRTDTGPAFFDALDEAGFVYD-LVDQ-------ASHKGFGLFTVCR 303
            R E Y W  D         PFD+I+G+DVAY ++L+ P I A    C     T+ L+GVT  DT P FF+ L + GF ++ L D         S + FG+F + +
Sbjct:  158 RAEEYLWGEDYDFGEKNGEPFDLIIGSDVAYRDYLHDPLIAALDEFCEP-QHTVALIGVTMNDTKPIFFEKLQQRGFRFEKLADHLLGDEFGTSSRQFGVFAISK 261          
BLAST of mRNA_H-canaliculatus_F_contig15.3760.1 vs. uniprot
Match: A0A448Z0L1_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z0L1_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 3.770e-9
Identity = 38/97 (39.18%), Postives = 51/97 (52.58%), Query Frame = 1
Query:   22 EAYDWSGDVPSAVGAVPFDVILGTDVAYYEHLYAPFIRAS---ALECTAGPDTLILLGVTRTDTGPAFFDALDEAGFVYDLVDQASHKGFG-LFTVC 300
            E YD+      A     FD+I+G+DVAY +HL+ P I A    +      P T+ L+GVT  DT P FF+ L  AGF Y+ +   S + FG  F  C
Sbjct:  260 EPYDFGTMGDGAPPPSSFDLIVGSDVAYRDHLHDPLIAALDEFSRPAWESPPTVALIGVTMDDTKPVFFEKLXRAGFSYERL---SDRLFGRAFATC 353          
BLAST of mRNA_H-canaliculatus_F_contig15.3760.1 vs. uniprot
Match: A0A662WQN6_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WQN6_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 1.900e-8
Identity = 35/82 (42.68%), Postives = 45/82 (54.88%), Query Frame = 1
Query:   76 DVILGTDVAYYEHLYAPFIRASALECTAGPDTLILLGVTRTDTGPAFFDALDEAGFVY------DLVDQASHKGFGLFTVCR 303
            DVILGTDVAY   LY P +    L   A   T++LLG+ RTDT   FF  L+  GF Y      +L ++   + FGLF + R
Sbjct:  183 DVILGTDVAYLRELYDPLLHT--LNRLAMSQTVVLLGLNRTDTDLTFFRQLEHDGFEYYKIPDLELPEEYWGRDFGLFEIRR 262          
BLAST of mRNA_H-canaliculatus_F_contig15.3760.1 vs. uniprot
Match: A0A2D4BZQ6_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BZQ6_PYTIN)

HSP 1 Score: 59.7 bits (143), Expect = 2.050e-8
Identity = 33/82 (40.24%), Postives = 47/82 (57.32%), Query Frame = 1
Query:   76 DVILGTDVAYYEHLYAPFIRASALECTAGPDTLILLGVTRTDTGPAFFDALDEAGF-VYDLVDQA---SHKG--FGLFTVCR 303
            D++LGTD+AY    Y P +    L      +TL+L+G+ R+DTG  FF  L++ GF  Y L D+     H+G  FGLF + R
Sbjct:  155 DIVLGTDIAYLTEFYEPILHT--LRRITHSETLVLIGLNRSDTGMQFFRRLEQEGFEYYKLSDRQLPREHRGKDFGLFQIRR 234          
BLAST of mRNA_H-canaliculatus_F_contig15.3760.1 vs. uniprot
Match: K0ST27_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0ST27_THAOC)

HSP 1 Score: 51.2 bits (121), Expect = 6.430e-6
Identity = 31/78 (39.74%), Postives = 47/78 (60.26%), Query Frame = 1
Query:   82 ILGTDVAYYEHLYAPFIRASALECTAGPDTLILLGVTRTDTGPAFFDALDEAGFVYD-----LVD-QASHKGFGLFTV 297
            I GTD+AY   L+ P I  S LE +   +T++L+GVT +DT P FFD L ++GF Y+     L+D +   + FG+  +
Sbjct:   47 IFGTDLAYRNSLHQPLIE-SLLELSHD-NTVMLIGVTMSDTQPRFFDLLTKSGFRYEKLSDHLLDPEFRGRNFGIIAI 122          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig15.3760.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D7FYS3_ECTSI1.020e-5480.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7R9UE36_9STRA4.760e-2048.57Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
W7U3Q4_9STRA1.490e-1743.75Nicotinamide N-methyltransferase, putative n=1 Tax... [more]
A0A7S2XUY9_9STRA1.950e-1744.76Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S1U640_9STRA7.160e-1744.76Hypothetical protein n=3 Tax=Phaeomonas parva TaxI... [more]
A0A7S0Y816_9STRA9.120e-1036.19Hypothetical protein n=1 Tax=Pseudo-nitzschia deli... [more]
A0A448Z0L1_9STRA3.770e-939.18Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A662WQN6_9STRA1.900e-842.68Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A2D4BZQ6_PYTIN2.050e-840.24Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
K0ST27_THAOC6.430e-639.74Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig15contigH-canaliculatus_F_contig15:57911..59182 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score180.3
Seed ortholog evalue4.9e-43
Seed eggNOG ortholog2880.D7FYS3
Preferred nameEFM6
KEGG koko:K21804,ko:K21805
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0008152,GO:0008168,GO:0008757,GO:0016740,GO:0016741,GO:0032259,GO:0044424,GO:0044464
EggNOG free text desc.lysine N-methyltransferase activity
EggNOG OGsKOG2793@1,KOG2793@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03110
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionNicotinamide N-methyltransferase-like
Ec32 orthologEc-19_002320.1
Exons3
Model size318
Cds size318
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig15.3760.1prot_H-canaliculatus_F_contig15.3760.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig15 57911..59182 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929241.5843854-CDS-H-canaliculatus_F_contig15:57910..579941622929241.5843854-CDS-H-canaliculatus_F_contig15:57910..57994Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15 57911..57994 -
1696845732.1191938-CDS-H-canaliculatus_F_contig15:57910..579941696845732.1191938-CDS-H-canaliculatus_F_contig15:57910..57994Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15 57911..57994 -
1622929241.5994005-CDS-H-canaliculatus_F_contig15:58324..584171622929241.5994005-CDS-H-canaliculatus_F_contig15:58324..58417Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15 58325..58417 -
1696845732.131719-CDS-H-canaliculatus_F_contig15:58324..584171696845732.131719-CDS-H-canaliculatus_F_contig15:58324..58417Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15 58325..58417 -
1622929241.6171138-CDS-H-canaliculatus_F_contig15:59041..591821622929241.6171138-CDS-H-canaliculatus_F_contig15:59041..59182Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15 59042..59182 -
1696845732.1466174-CDS-H-canaliculatus_F_contig15:59041..591821696845732.1466174-CDS-H-canaliculatus_F_contig15:59041..59182Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15 59042..59182 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig15.3760.1

>prot_H-canaliculatus_F_contig15.3760.1 ID=prot_H-canaliculatus_F_contig15.3760.1|Name=mRNA_H-canaliculatus_F_contig15.3760.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=106bp
GLCSVRVEAYDWSGDVPSAVGAVPFDVILGTDVAYYEHLYAPFIRASALE
CTAGPDTLILLGVTRTDTGPAFFDALDEAGFVYDLVDQASHKGFGLFTVC
RERPE*
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mRNA from alignment at H-canaliculatus_F_contig15:57911..59182-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig15.3760.1 ID=mRNA_H-canaliculatus_F_contig15.3760.1|Name=mRNA_H-canaliculatus_F_contig15.3760.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1272bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15:57911..59182- (Hapterophycus canaliculatus Oshoro5f female)
GGTCTGTGCTCAGTTCGAGTGGAAGCGTACGATTGGAGCGGCGACGTGCC CTCCGCGGTCGGCGCGGTGCCGTTCGACGTGATTCTCGGCACCGACGTCG CGTACTACGAGCACCTCTACGCCCCGTTTATACGGGCAAGTGTTTTTTTT GTCCGCGAAGGGAGAGGAGCTTGGTTGCACGAGTAGGATGCAGTGCCGGC CCGCTGGCAAGAAACACCTATTTCAGCTTAGGCTCAAATCTTATTTTGAT CCCACCGCCTGAGCGCAGGCTATTGTATAGGATTAAGTTTGGCGCCGGAA GCTGACCCCAATTTCTTTGGCGCAAAATTCTGAGCCTCCATTTCTTACGA ACATCTTTCCTTCGAGCGGGCCGGCACTGTAGCTCGATCTACGCATGTGG CAAGAGGCCTACCGCTCCGTTGAAACCTCTGGTATCTCCTAATGGAAGTC GGATAGGTGACGACAGCCGAGTATCTCCTAGTAGCACTCTTTTGTTGGCG CTTCCTTCTTCTTCTCCTTGCGGCTGTCTTACCCTAATCCTCTGTCCGTC TTCGGACTGCTATCTCAAGTTTGACTTGGACCAGTCGCGTTCTCTCCGTA CTCCTTTCTGCAAAGGAAAGTTAAGTAACAGGCAAACTTCGCTTCGCTTT CCCGTGTTTAAACATAAAATGTCGCAGTGGCTCTCGGCTTGCTGTGTTTG AACTCTGACGATCACCGCGCGCTCAATTCACTCGGTCGTGCGATCGATGC TGCCGCTCCCATCAGGCCCTCGAGTGCACTGCGGGACCAGATACCCTGAT TTTGCTAGGAGTAACCAGAACAGACACGGGCCCAGCATTCTTCGACGCCC TTGATGAGGTGAGAACCCTTCACCTTGTATCATGCCAAACCTCGTCACTT TTTTGCCCGCTGTGCGAGATCGGCCAGACGACGACTGTAGTGTGTATGTG TTGAAGTACACCAGGCGGTGCGTTTCTCGTCAACAGTTTGATGATGTTCT CATGATGTGGAAATGCCTCTGGCTGGCTGCACTCTCCACTCGCCCCCAGG AACATCGGTGGCAGCAAAACTTCAACGTGTGCACATCAACATTTGTGTGT ATGACACGATTAGAATTCGATGTAGATAAAACGATGATTTGAAGTGTCCA GCCCATTCATCCCCACGGCATGTTCACCGGTTTTGCAGGCAGGCTTCGTG TACGACCTGGTCGACCAGGCATCACACAAGGGATTCGGGTTGTTCACCGT CTGCCGAGAGAGGCCAGAGTAA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig15:57911..59182-

>mRNA_H-canaliculatus_F_contig15.3760.1 ID=mRNA_H-canaliculatus_F_contig15.3760.1|Name=mRNA_H-canaliculatus_F_contig15.3760.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=636bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15:57911..59182- (Hapterophycus canaliculatus Oshoro5f female)
GGTCTGTGCTCAGTTCGAGTGGAAGCGTACGATTGGAGCGGCGACGTGCC
CTCCGCGGTCGGCGCGGTGCCGTTCGACGTGATTCTCGGCACCGACGTCG
CGTACTACGAGCACCTCTACGCCCCGTTTATACGGGCAAGTGGTCTGTGC
TCAGTTCGAGTGGAAGCGTACGATTGGAGCGGCGACGTGCCCTCCGCGGT
CGGCGCGGTGCCGTTCGACGTGATTCTCGGCACCGACGTCGCGTACTACG
AGCACCTCTACGCCCCGTTTATACGGGCAAGTGCCCTCGAGTGCACTGCG
GGACCAGATACCCTGATTTTGCTAGGAGTAACCAGAACAGACACGGGCCC
AGCATTCTTCGACGCCCTTGATGAGGCCCTCGAGTGCACTGCGGGACCAG
ATACCCTGATTTTGCTAGGAGTAACCAGAACAGACACGGGCCCAGCATTC
TTCGACGCCCTTGATGAGGCAGGCTTCGTGTACGACCTGGTCGACCAGGC
ATCACACAAGGGATTCGGGTTGTTCACCGTCTGCCGAGAGAGGCCAGAGT
AAGCAGGCTTCGTGTACGACCTGGTCGACCAGGCATCACACAAGGGATTC
GGGTTGTTCACCGTCTGCCGAGAGAGGCCAGAGTAA
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