mRNA_H-canaliculatus_F_contig15.3753.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig15.3753.1
Unique NamemRNA_H-canaliculatus_F_contig15.3753.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig15.3753.1 vs. uniprot
Match: D7FYS9_ECTSI (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYS9_ECTSI)

HSP 1 Score: 213 bits (542), Expect = 1.040e-69
Identity = 109/116 (93.97%), Postives = 113/116 (97.41%), Query Frame = 1 
Query:    1 MATPVGTGPIVQDVAPKGGYPKVQISRQLPFGRGPRGSVILGLVTLTMAVGYYKLGQANKGRRAEQHEKRLARIALMPMLQAEEDRKAVLAKRFNVQLQKGLHDSLNAWKEEEELN 348
            MATPVGTGPIVQDVAPKGG+PKVQISRQLP GRGPRGSV+LGLVT+TMAVGYYKLGQANK RRAEQHEKRLARIALMPMLQAEEDRKAVLAKRFN QLQKGLH+SLNAWKEEEELN
Sbjct:    1 MATPVGTGPIVQDVAPKGGFPKVQISRQLPSGRGPRGSVVLGLVTVTMAVGYYKLGQANKARRAEQHEKRLARIALMPMLQAEEDRKAVLAKRFNAQLQKGLHESLNAWKEEEELN 116
[Close]
BLAST of mRNA_H-canaliculatus_F_contig15.3753.1 vs. uniprot
Match: A0A5J4XG14_9CHLO (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XG14_9CHLO)

HSP 1 Score: 78.6 bits (192), Expect = 3.470e-16
Identity = 44/107 (41.12%), Postives = 67/107 (62.62%), Query Frame = 1 
Query:   25 PIVQDVAPKGGYPKVQISRQLPFGRGPRGSVILGLVTLTMAVGYYKLGQANKGRRAEQHEKRLARIALMPMLQAEEDRKAVLAKRFNVQLQKGLHDSLNAWKEEEEL 345
            P++QD  P GG+P V+ +R++P   GP G  +  +    MA G+ K+GQ N  RRA + EK+ AR A+MP+LQAEEDR+ V A    ++ +K L  ++  +K  E+L
Sbjct:   19 PVLQDGPPPGGFPSVRYARRIP-STGPAGFTLFAVTASIMAYGFIKVGQTNHERRAAKAEKKAARFAIMPILQAEEDRRYVQANEAFIRKEKELMKNVPGYKAGEQL 124
[Close]
BLAST of mRNA_H-canaliculatus_F_contig15.3753.1 vs. uniprot
Match: A0A061QUA6_9CHLO (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061QUA6_9CHLO)

HSP 1 Score: 78.2 bits (191), Expect = 4.910e-16
Identity = 40/102 (39.22%), Postives = 67/102 (65.69%), Query Frame = 1 
Query:   25 PIVQDVAPKGGYPKVQISRQLPFGRGPRGSVILGLVTLTMAVGYYKLGQANKGRRAEQHEKRLARIALMPMLQAEEDRKAVLAKRFNVQLQKGLHDSLNAWK 330
            P++QD  P GG+P ++I+R++P   GP G+ I G+  L M+ G+Y +GQ N  RRA++ E+   R AL+P LQAEEDR+ + AK+  ++ +  +   ++ W+
Sbjct:   19 PVLQDGPPPGGFPSIRIARRIP-NTGPSGAAIFGVGALVMSYGFYLVGQTNIQRRADKAEREHVRRALVPFLQAEEDRRYLKAKKQLLEKEASIMKDVDGWE 119
[Close]
BLAST of mRNA_H-canaliculatus_F_contig15.3753.1 vs. uniprot
Match: A0A087SFV8_AUXPR (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 n=1 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A087SFV8_AUXPR)

HSP 1 Score: 74.7 bits (182), Expect = 1.070e-14
Identity = 47/107 (43.93%), Postives = 65/107 (60.75%), Query Frame = 1 
Query:   25 PIVQDVAPKGGYPKVQISRQLPFGRGPRGSVILGLVTLTMAVGYYKLGQANKGRRAEQHEKRLARIALMPMLQAEEDRKAVLAKRFNVQLQKGLHDSLNAWKEEEEL 345
            PIVQD  P GG+P V+ +R+LP   GP G  + G+    MA G+Y++GQ N  RR E+ EK  +R AL+P LQAEEDR+ V A     + QK +  +   +K EE +
Sbjct:   19 PIVQDGPPPGGFPAVRYARRLP-NSGPAGFTLFGVGAAVMAYGFYQVGQGNIKRRDEKREKLDSRRALVPFLQAEEDRRWVAANEEFQKKQKEIMKNHPEYKAEESV 124
[Close]
BLAST of mRNA_H-canaliculatus_F_contig15.3753.1 vs. uniprot
Match: A0A7S3CKE5_9SPIT (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 (Fragment) n=1 Tax=Strombidium rassoulzadegani TaxID=1082188 RepID=A0A7S3CKE5_9SPIT)

HSP 1 Score: 73.2 bits (178), Expect = 4.460e-14
Identity = 38/84 (45.24%), Postives = 59/84 (70.24%), Query Frame = 1 
Query:   28 IVQDVAPKGGYPKVQISRQLPFGRGPRGSVILGLVTLTMAVGYYKLGQANKGRRAEQHEKRLARIALMPMLQAEEDRKAVLAKR 279
            ++QD  P GG+P V+I+R++P   GP G+ + G+  L ++ G+Y +GQ N  +RA++ EK   R AL+P+LQAEEDR+ V AK+
Sbjct:   22 LLQDGPPAGGFPSVRIARRIP-NTGPSGAAVFGVGALVISYGFYIVGQTNIQKRADRAEKEAVRRALVPVLQAEEDRRFVAAKK 104
[Close]
BLAST of mRNA_H-canaliculatus_F_contig15.3753.1 vs. uniprot
Match: F0YB35_AURAN (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YB35_AURAN)

HSP 1 Score: 72.4 bits (176), Expect = 8.100e-14
Identity = 47/105 (44.76%), Postives = 64/105 (60.95%), Query Frame = 1 
Query:   28 IVQDVAPKGGYPKVQISRQLPFGRGPRGSVILGLVTLTMAVGYYKLGQANKGRRAEQHEKRLARIALMPMLQAEEDRKAVLAK----RFNVQLQKGLHDSLNAWK 330
            +VQD+ P GGYP V I ++    RGP G +I     LT+A G+Y++GQ N  R A + EKR AR+A++P LQAEED +AV AK        ++ KG+ D    WK
Sbjct:   18 VVQDMPPAGGYPDV-IFKKATINRGPDGWMIWVGSLLTVAFGFYRVGQCNLERNAAKKEKREARMAIVPYLQAEEDARAVAAKLNQDADEAEIMKGVKD----WK 117
[Close]
BLAST of mRNA_H-canaliculatus_F_contig15.3753.1 vs. uniprot
Match: I0YQ01_COCSC (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 n=2 Tax=Coccomyxa TaxID=41891 RepID=I0YQ01_COCSC)

HSP 1 Score: 72.4 bits (176), Expect = 8.480e-14
Identity = 38/102 (37.25%), Postives = 64/102 (62.75%), Query Frame = 1 
Query:   25 PIVQDVAPKGGYPKVQISRQLPFGRGPRGSVILGLVTLTMAVGYYKLGQANKGRRAEQHEKRLARIALMPMLQAEEDRKAVLAKRFNVQLQKGLHDSLNAWK 330
            P++QD  P GG+P ++ +R++P   GP G  +  +    MA G+Y++G+ N+ RRA + EK   R A+ P+LQAEEDR+ V AK+ +V+ +  +   +  W+
Sbjct:   19 PVLQDGPPPGGFPSIRYARRIP-STGPTGFTLFAVGAAVMAFGFYRVGEFNRYRRALKAEKMTMRTAIYPVLQAEEDRRWVQAKKQSVENEAKIMKDVPGWE 119
[Close]
BLAST of mRNA_H-canaliculatus_F_contig15.3753.1 vs. uniprot
Match: A0A2P6U3A2_CHLSO (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6U3A2_CHLSO)

HSP 1 Score: 71.6 bits (174), Expect = 1.690e-13
Identity = 40/83 (48.19%), Postives = 55/83 (66.27%), Query Frame = 1 
Query:   25 PIVQDVAPKGGYPKVQISRQLPFGRGPRGSVILGLVTLTMAVGYYKLGQANKGRRAEQHEKRLARIALMPMLQAEEDRKAVLA 273
            PIVQD  P GG+P ++ +R++P   GP G  +  +    MA G+YK+GQ+N+ RR E+ E   AR AL+P LQAEEDR+ V A
Sbjct:   19 PIVQDGPPPGGFPAIRYARRVP-STGPSGFTLFAVGAAVMAYGFYKVGQSNRQRRGEKAEHFGARAALVPFLQAEEDRRWVNA 100
[Close]
BLAST of mRNA_H-canaliculatus_F_contig15.3753.1 vs. uniprot
Match: A0A2P6VLY9_9CHLO (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 n=2 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VLY9_9CHLO)

HSP 1 Score: 71.2 bits (173), Expect = 2.280e-13
Identity = 40/94 (42.55%), Postives = 59/94 (62.77%), Query Frame = 1 
Query:   25 PIVQDVAPKGGYPKVQISRQLPFGRGPRGSVILGLVTLTMAVGYYKLGQANKGRRAEQHEKRLARIALMPMLQAEEDRKAVLAKRFNVQLQKGL 306
            P+VQD  P GG+P  + +R++P   GP G  +       MA G+YK+GQ+N+ RRA++     AR AL+P LQAEEDR+ V A +  +  Q+G+
Sbjct:   19 PVVQDGPPPGGFPSFRYARRVP-STGPSGITLFAAGAAVMAFGFYKVGQSNRERRAQKAANLAARAALVPFLQAEEDRRWVNANQTFLARQEGI 111
[Close]
BLAST of mRNA_H-canaliculatus_F_contig15.3753.1 vs. uniprot
Match: A0A388KNK5_CHABU (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KNK5_CHABU)

HSP 1 Score: 68.6 bits (166), Expect = 2.710e-12
Identity = 35/102 (34.31%), Postives = 64/102 (62.75%), Query Frame = 1 
Query:   25 PIVQDVAPKGGYPKVQISRQLPFGRGPRGSVILGLVTLTMAVGYYKLGQANKGRRAEQHEKRLARIALMPMLQAEEDRKAVLAKRFNVQLQKGLHDSLNAWK 330
            P++QD  P GG+P ++ +R++P   GP G V+  +    ++ G Y++GQ N  RRA + EK  AR+A++P++QAEED +   A++  +  ++ +  ++  WK
Sbjct:   19 PVLQDGPPPGGFPAIRYARKIP-NTGPSGVVVFSIAAAVISYGMYQVGQGNLHRRALKKEKMEARMAILPLIQAEEDVRYAKARQKALAEEEKIMQNVPGWK 119
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig15.3753.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYS9_ECTSI1.040e-6993.97NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
A0A5J4XG14_9CHLO3.470e-1641.12NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
A0A061QUA6_9CHLO4.910e-1639.22NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
A0A087SFV8_AUXPR1.070e-1443.93NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
A0A7S3CKE5_9SPIT4.460e-1445.24NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
F0YB35_AURAN8.100e-1444.76NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
I0YQ01_COCSC8.480e-1437.25NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
A0A2P6U3A2_CHLSO1.690e-1348.19NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
A0A2P6VLY9_9CHLO2.280e-1342.55NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
A0A388KNK5_CHABU2.710e-1234.31NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig15contigH-canaliculatus_F_contig15:28951..32324 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score217.6
Seed ortholog evalue3e-54
Seed eggNOG ortholog2880.D7FYS9
Preferred nameNDUFA13
KEGG koko:K11353,ko:K14009
KEGG TC3.D.1.6
KEGG Pathwayko00190,ko01100,ko04141,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,ko05165,map00190,map01100,map04141,map04714,map04723,map04932,map05010,map05012,map05016,map05165
KEGG ModuleM00146
GOsGO:0000003,GO:0000166,GO:0001101,GO:0001558,GO:0003006,GO:0003674,GO:0003824,GO:0003954,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005747,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006355,GO:0006605,GO:0006626,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006839,GO:0006886,GO:0006915,GO:0006996,GO:0007005,GO:0007006,GO:0007007,GO:0007154,GO:0007165,GO:0007166,GO:0007275,GO:0008104,GO:0008137,GO:0008144,GO:0008150,GO:0008152,GO:0008219,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009790,GO:0009791,GO:0009793,GO:0009853,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009968,GO:0009987,GO:0010033,GO:0010154,GO:0010257,GO:0010468,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010629,GO:0010646,GO:0010648,GO:0010941,GO:0010942,GO:0010950,GO:0010952,GO:0012501,GO:0015031,GO:0015833,GO:0015980,GO:0016020,GO:0016043,GO:0016310,GO:0016491,GO:0016651,GO:0016655,GO:0017038,GO:0017076,GO:0017144,GO:0019219,GO:0019222,GO:0019637,GO:0019693,GO:0019866,GO:0022414,GO:0022607,GO:0022900,GO:0022904,GO:0023051,GO:0023052,GO:0023057,GO:0030162,GO:0030308,GO:0030554,GO:0030964,GO:0031090,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032526,GO:0032553,GO:0032555,GO:0032559,GO:0032981,GO:0032991,GO:0033036,GO:0033108,GO:0033365,GO:0033993,GO:0034097,GO:0034613,GO:0034622,GO:0034641,GO:0035456,GO:0035458,GO:0035639,GO:0036094,GO:0040008,GO:0042176,GO:0042221,GO:0042773,GO:0042775,GO:0042886,GO:0042981,GO:0043065,GO:0043066,GO:0043067,GO:0043068,GO:0043069,GO:0043085,GO:0043094,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043280,GO:0043281,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044743,GO:0045039,GO:0045184,GO:0045271,GO:0045333,GO:0045732,GO:0045862,GO:0045892,GO:0045926,GO:0045934,GO:0046034,GO:0046483,GO:0046907,GO:0048316,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048608,GO:0048731,GO:0048856,GO:0050136,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051128,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051336,GO:0051345,GO:0051641,GO:0051649,GO:0051716,GO:0052547,GO:0052548,GO:0055085,GO:0055086,GO:0055114,GO:0060255,GO:0060548,GO:0061024,GO:0061458,GO:0065002,GO:0065003,GO:0065007,GO:0065009,GO:0070013,GO:0070469,GO:0070585,GO:0070727,GO:0070887,GO:0071229,GO:0071300,GO:0071310,GO:0071345,GO:0071396,GO:0071702,GO:0071704,GO:0071705,GO:0071806,GO:0071840,GO:0072521,GO:0072593,GO:0072594,GO:0072655,GO:0072657,GO:0080090,GO:0090150,GO:0090151,GO:0097159,GO:0097190,GO:0097191,GO:0097367,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1901135,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901700,GO:1901701,GO:1902494,GO:1902531,GO:1902532,GO:1902679,GO:1903506,GO:1903507,GO:1990204,GO:1990542,GO:2000112,GO:2000113,GO:2000116,GO:2001056,GO:2001141,GO:2001233,GO:2001234,GO:2001242,GO:2001243
EggNOG free text desc.cellular response to interferon-beta
EggNOG OGsKOG3300@1,KOG3300@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionGRIM-19
Ec32 orthologEc-19_002380.1
Exons3
Model size351
Cds size351
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig15.3753.1prot_H-canaliculatus_F_contig15.3753.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig15 28951..32324 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929240.6377003-CDS-H-canaliculatus_F_contig15:28950..290161622929240.6377003-CDS-H-canaliculatus_F_contig15:28950..29016Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15 28951..29016 +
1696845731.7058218-CDS-H-canaliculatus_F_contig15:28950..290161696845731.7058218-CDS-H-canaliculatus_F_contig15:28950..29016Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15 28951..29016 +
1622929240.6523893-CDS-H-canaliculatus_F_contig15:30389..305661622929240.6523893-CDS-H-canaliculatus_F_contig15:30389..30566Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15 30390..30566 +
1696845731.7184658-CDS-H-canaliculatus_F_contig15:30389..305661696845731.7184658-CDS-H-canaliculatus_F_contig15:30389..30566Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15 30390..30566 +
1622929240.6653347-CDS-H-canaliculatus_F_contig15:32216..323241622929240.6653347-CDS-H-canaliculatus_F_contig15:32216..32324Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15 32217..32324 +
1696845731.733296-CDS-H-canaliculatus_F_contig15:32216..323241696845731.733296-CDS-H-canaliculatus_F_contig15:32216..32324Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15 32217..32324 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig15.3753.1

>prot_H-canaliculatus_F_contig15.3753.1 ID=prot_H-canaliculatus_F_contig15.3753.1|Name=mRNA_H-canaliculatus_F_contig15.3753.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=117bp
MATPVGTGPIVQDVAPKGGYPKVQISRQLPFGRGPRGSVILGLVTLTMAV
GYYKLGQANKGRRAEQHEKRLARIALMPMLQAEEDRKAVLAKRFNVQLQK
GLHDSLNAWKEEEELN*
back to top

mRNA from alignment at H-canaliculatus_F_contig15:28951..32324+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig15.3753.1 ID=mRNA_H-canaliculatus_F_contig15.3753.1|Name=mRNA_H-canaliculatus_F_contig15.3753.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3374bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15:28951..32324+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGCGACGCCGGTAGGCACCGGGCCAATCGTCCAGGATGTCGCTCCCAA
GGGTGGATACCCCAAGGTACGCGAACACTAGCGAAGTTTCTTCGACTTCA
GTAGAGTTGCTCCCGTCTGTGTCCTGCCCTCAAGAGGCACTCTCTAGGTT
ATATCAAATACCCTTCGTTCCACCGCTCGCTTTGCTGCGCGCGAGCCTAG
CGTTGTGGGTGAGTTGTTGTCCGGGCTACTGCGCATGGTGTTGCTTTCTT
TAAGAGGACCTTGCGTATCATGATTTGTTGGCATCGAACCGTTGTGCCTC
ATGCAGTACACATCGCTTAGGGTTCGATAATAGGGTCACAGGTACGTCGG
CGCCTTCGGTCCTGTCTAGACGTTCAATCCTATCATTCGTCAACGTCTGC
TCTAGTCAACGTATTCTCGTGGACATCGTGGCAGACATGAGCGACAATAA
GTAGAACATCGTCAAAAGCTCTGTGTTCGCCACAAGAATGCGGAAGAAAG
ATCTGCAGCAGGGTGTGCACTGTGAACAATGCTTCGTTGCTCCGCCATTG
CACTCTACGTACACCTAGCTGACATGTAGCCCACATCCATCAGCCTTGGC
AGTCCCATGGAACGGGTGCAGTTTGTCGAAAAGCGCATCAAGCAAATTAT
CCACGACTGCTGTAGTTTACTCGCGTAGCTTCTCCCACCGATTCTCCCTA
AATTATAGGTTGCCATGCGTGAGAGTGGAAAGTGAATGATCCACTACTGC
TGTCCACCTCCATGGTTCTTTGTGAGAAATAGTCAACGTTACAAAACAAG
TACCCTCCGCTGAGACAAAATGAGACAGGAGGACTTGTGCAACTAGCGAC
TCATGAGGATTTGTGTTGAATTCCTTACACTGAGGGTTCAGTATATTGGA
GAAACATGTCAAGGAATCAGACAACACATTTGATGCGTGTGAGTAGAGAA
AGATGACGAGGTATACATGTACATGGCGCATCATGATGCTTCCTGTGATG
AGGTGATGTGGTGCCTGGTGAGCCTTTCTTGAGACCGTATTTGGTGATTC
GCTCGTCTCGTATGATAGGCTCGTTGTGATTAGTAGAGCTGAAGCAGATG
GCACCCACAAGTATGAGCGATCAGTCGGGAGACTTCTCGCCATCAATGCA
GCGGTTGACGCAAACGACTCGAATTCTACACACCTGTACACACCTGAAAG
CACACACACACACACACGTGGTTTGGAGACGATGTCTTGTAACAAGAGCA
TATGTGAGAAAGATAGACAGCGCTCTTCTCTTAAGCCTTCCAGAATACCT
CAATTATCTGGCGGAGAGAGCTACGTACGGCACAACAGCTGAATCCAAAA
GCCGGCTGCTCCGAAAGTGGAAGGGAGGTCGTGCGGGGAGCTAATGCGGA
GCAGCAAACGATCTGTCTCTTCGCTCTTTGTTTGATCAGGTCCAAATTTC
GCGCCAACTCCCATTCGGTCGAGGGCCGCGCGGATCAGTAATTCTCGGTC
TCGTGACGCTCACGATGGCCGTCGGGTACTACAAGCTCGGGCAAGCGAAC
AAGGGACGGCGAGCAGAGCAGCACGAAAAGCGACTGGCTCGAATCGCGTT
GATGCCCATGCTTCAGGTAACACAGATGGCAGCACGGTGGCATAAGTTAG
GGCGTCTGGAAGGGTCCTTAGCCTTGTCCTTGGTGAAGCGGTGAAGTTCG
GGTTTGCACGTAATATCCGAAACTATTTCGCTCTCGATAGCTTTCGCTCC
AATTTGAAGCAGCAGCGTGATTGAAAAACAGGAGGTTTTCGCCGAAACAG
GCCCATCTACGGGCGGCGCCTGCTTTTGTGTTGTGTTCTTTCCCTGAAAC
ATTCACGACGCAAGCGAACGCCGGGGAAAAATAATCCCTTGGCATATCTG
GCCCGAGGTGCAGTTGGTAGTACATTGGAGGAGTCGACATCGTTCACTCC
CGATGTTGTCGGCTCTCAGACTTGTGCCTTGAAGGCGTTTCAGCGGACTG
CGATGTCTCGTGCGAGGTGTCTTCGTCGGGACGCATAGATGCGATTGGTG
GCAGCTCACCACGGGGCATGATCCTTGGTATTCTCATAGGGGGGCGTTCA
TGATCGTGCCAAACCACGCGACGACGGCCGTGTACAAGTACAAGTACACG
TTGGGGCGATCTGCTTTTACTTCTACAACAGTGTTAGAGATCGGCGCCGT
CAGCAGAGCCGATCGCTTCTCGTCACAAAATCGGCGATAATTGATATTTT
GATGCATCTTTAATAAAGGTACCAATCCCGGATCGATCGATTGTCTTTCT
CGATCTTCGCGAAAGTGTCTCATGCAGTTTTTCGAGGTTTGCCGACCTAC
TCTCCCGTCATTACAGATGGCCCCCAAGCACGCACCAAGAGCAGCATCCT
GCATATGCCATTGGAAAATGAACGAATATGCACAGCGATTGTTGTTTATG
GATTGTGCACATTCGTTTGGTATTCGAACCCTGAAGGCATTCGAATGTGT
GCATTGTGTTTTACCATCCGTTGGATTTAGTGCGTAAGATGTACTCCAAG
TAGGTCCGAAACATGTGACTATTTTTCATTTTTCAAGTCTCAGATGTTCG
CGATCGCTTAGCCTGGTCGAGGAACAAAACAGCGGGTCGGTATTGTGCTT
GGGCTCTGCGACACCTGTGGTCTGTCGACTGTGATGCTGTGACCGTACGA
TCGTACAGCACAGGCGAACCCGCAGGTCGAATTGCAGGTCGAATTGACCA
ACTTTTTCTGTGCTTCATAAGATGTTATTGGGGATGGGACGAAAATATCG
GGAAACAACCGAAATCGCGATTAGCGAAAGATCGGCAAAAAAAAAAGCGA
TCTCGATTCCCCGGATCGGAGTCAATACCGAGATCATCTCAACCCAAATC
GATCTCAATACTAGTAACACTTCTTACCGGAGGCACCGTTCATCCTTCCC
GCCGACCCGTATTAGCTGGACCTGCAGCACCGGGCGCAGTCATCATCACT
CCAAATTTCGTTATTTTCAAAATTGGTCGGGCCGAATCAGGACGTTCACT
TGTGCGGAATTTTTTTGCTCATCTATTTTAGCAAATGTTGCACACCCCTT
CGAATTTCCAGAGCCCGGCTTGGATGCAGGACGCTTGGCATTTTGTTGGG
CGTGGAAGACTCAGTTGCACTCATGGTACCATGTGCCGAGAGCATGTGCT
CGATAACTCTGGTTGATGAGCGGTACGTCGTGTCCTTGCGTTGCATTTTC
GCTGGATTTGATGCAGGCCGAAGAGGACAGGAAGGCGGTGCTGGCGAAGC
GCTTCAATGTCCAGCTTCAAAAAGGCCTCCACGACTCTCTGAACGCTTGG
AAAGAGGAGGAGGAGTTGAACTAG
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig15:28951..32324+

>mRNA_H-canaliculatus_F_contig15.3753.1 ID=mRNA_H-canaliculatus_F_contig15.3753.1|Name=mRNA_H-canaliculatus_F_contig15.3753.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=702bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15:28951..32324+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGCGACGCCGGTAGGCACCGGGCCAATCGTCCAGGATGTCGCTCCCAA
GGGTGGATACCCCAAGATGGCGACGCCGGTAGGCACCGGGCCAATCGTCC
AGGATGTCGCTCCCAAGGGTGGATACCCCAAGGTCCAAATTTCGCGCCAA
CTCCCATTCGGTCGAGGGCCGCGCGGATCAGTAATTCTCGGTCTCGTGAC
GCTCACGATGGCCGTCGGGTACTACAAGCTCGGGCAAGCGAACAAGGGAC
GGCGAGCAGAGCAGCACGAAAAGCGACTGGCTCGAATCGCGTTGATGCCC
ATGCTTCAGGTCCAAATTTCGCGCCAACTCCCATTCGGTCGAGGGCCGCG
CGGATCAGTAATTCTCGGTCTCGTGACGCTCACGATGGCCGTCGGGTACT
ACAAGCTCGGGCAAGCGAACAAGGGACGGCGAGCAGAGCAGCACGAAAAG
CGACTGGCTCGAATCGCGTTGATGCCCATGCTTCAGGCCGAAGAGGACAG
GAAGGCGGTGCTGGCGAAGCGCTTCAATGTCCAGCTTCAAAAAGGCCTCC
ACGACTCTCTGAACGCTTGGAAAGAGGAGGAGGAGTTGAACTAGGCCGAA
GAGGACAGGAAGGCGGTGCTGGCGAAGCGCTTCAATGTCCAGCTTCAAAA
AGGCCTCCACGACTCTCTGAACGCTTGGAAAGAGGAGGAGGAGTTGAACT
AG
back to top