mRNA_H-canaliculatus_F_contig14982.3744.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14982.3744.1
Unique NamemRNA_H-canaliculatus_F_contig14982.3744.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14982.3744.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14982contigH-canaliculatus_F_contig14982:1720..2091 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size372
Cds size372
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929239.2692912-CDS-H-canaliculatus_F_contig14982:1719..20911622929239.2692912-CDS-H-canaliculatus_F_contig14982:1719..2091Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14982 1720..2091 +
1696845730.937863-CDS-H-canaliculatus_F_contig14982:1719..20911696845730.937863-CDS-H-canaliculatus_F_contig14982:1719..2091Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14982 1720..2091 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14982.3744.1prot_H-canaliculatus_F_contig14982.3744.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14982 1720..2091 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14982.3744.1

>prot_H-canaliculatus_F_contig14982.3744.1 ID=prot_H-canaliculatus_F_contig14982.3744.1|Name=mRNA_H-canaliculatus_F_contig14982.3744.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=124bp
RLVVVLDSTFAGLLDKQVLPWREVRGVVLCAKERVKIYQRGGGKSQNDKC
VNVSRGAWGNTSFPDAESRTSDVEPRPCNKNTRQHRHTGVRGDMCSDAVV
AKLFLAHGRERVPQATWTRGEVE*
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mRNA from alignment at H-canaliculatus_F_contig14982:1720..2091+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14982.3744.1 ID=mRNA_H-canaliculatus_F_contig14982.3744.1|Name=mRNA_H-canaliculatus_F_contig14982.3744.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=372bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14982:1720..2091+ (Hapterophycus canaliculatus Oshoro5f female)
CGGCTCGTCGTCGTCCTCGACAGTACTTTCGCGGGTCTCTTGGACAAGCA
GGTCCTCCCGTGGCGAGAGGTCCGCGGGGTCGTCCTCTGCGCCAAAGAGC
GGGTCAAGATTTACCAAAGAGGAGGTGGAAAAAGTCAAAATGACAAGTGT
GTAAACGTTTCGCGCGGGGCATGGGGAAATACGTCATTTCCTGATGCGGA
AAGCCGTACGAGCGATGTAGAGCCTCGACCATGCAACAAAAACACGAGAC
AACACCGACATACCGGCGTACGGGGCGACATGTGTAGTGATGCTGTCGTC
GCCAAACTTTTCCTTGCTCATGGTCGTGAGCGGGTGCCCCAAGCGACGTG
GACCCGTGGCGAAGTTGAATAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14982:1720..2091+

>mRNA_H-canaliculatus_F_contig14982.3744.1 ID=mRNA_H-canaliculatus_F_contig14982.3744.1|Name=mRNA_H-canaliculatus_F_contig14982.3744.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=744bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14982:1720..2091+ (Hapterophycus canaliculatus Oshoro5f female)
CGGCTCGTCGTCGTCCTCGACAGTACTTTCGCGGGTCTCTTGGACAAGCA
GGTCCTCCCGTGGCGAGAGGTCCGCGGGGTCGTCCTCTGCGCCAAAGAGC
GGGTCAAGATTTACCAAAGAGGAGGTGGAAAAAGTCAAAATGACAAGTGT
GTAAACGTTTCGCGCGGGGCATGGGGAAATACGTCATTTCCTGATGCGGA
AAGCCGTACGAGCGATGTAGAGCCTCGACCATGCAACAAAAACACGAGAC
AACACCGACATACCGGCGTACGGGGCGACATGTGTAGTGATGCTGTCGTC
GCCAAACTTTTCCTTGCTCATGGTCGTGAGCGGGTGCCCCAAGCGACGTG
GACCCGTGGCGAAGTTGAATAGCGGCTCGTCGTCGTCCTCGACAGTACTT
TCGCGGGTCTCTTGGACAAGCAGGTCCTCCCGTGGCGAGAGGTCCGCGGG
GTCGTCCTCTGCGCCAAAGAGCGGGTCAAGATTTACCAAAGAGGAGGTGG
AAAAAGTCAAAATGACAAGTGTGTAAACGTTTCGCGCGGGGCATGGGGAA
ATACGTCATTTCCTGATGCGGAAAGCCGTACGAGCGATGTAGAGCCTCGA
CCATGCAACAAAAACACGAGACAACACCGACATACCGGCGTACGGGGCGA
CATGTGTAGTGATGCTGTCGTCGCCAAACTTTTCCTTGCTCATGGTCGTG
AGCGGGTGCCCCAAGCGACGTGGACCCGTGGCGAAGTTGAATAG
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