mRNA_H-canaliculatus_F_contig1498.3741.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1498.3741.1
Unique NamemRNA_H-canaliculatus_F_contig1498.3741.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1498.3741.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1498contigH-canaliculatus_F_contig1498:14469..15240 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size585
Cds size324
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1498.3741.1prot_H-canaliculatus_F_contig1498.3741.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1498 14506..15016 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929238.1747427-UTR-H-canaliculatus_F_contig1498:14468..145051622929238.1747427-UTR-H-canaliculatus_F_contig1498:14468..14505Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1498 14469..14505 -
1696845730.3842754-UTR-H-canaliculatus_F_contig1498:14468..145051696845730.3842754-UTR-H-canaliculatus_F_contig1498:14468..14505Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1498 14469..14505 -
1622929238.229327-UTR-H-canaliculatus_F_contig1498:15016..152401622929238.229327-UTR-H-canaliculatus_F_contig1498:15016..15240Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1498 15017..15240 -
1696845730.4264846-UTR-H-canaliculatus_F_contig1498:15016..152401696845730.4264846-UTR-H-canaliculatus_F_contig1498:15016..15240Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1498 15017..15240 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929238.1953673-CDS-H-canaliculatus_F_contig1498:14505..147531622929238.1953673-CDS-H-canaliculatus_F_contig1498:14505..14753Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1498 14506..14753 -
1696845730.3940942-CDS-H-canaliculatus_F_contig1498:14505..147531696845730.3940942-CDS-H-canaliculatus_F_contig1498:14505..14753Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1498 14506..14753 -
1622929238.2129242-CDS-H-canaliculatus_F_contig1498:14940..150161622929238.2129242-CDS-H-canaliculatus_F_contig1498:14940..15016Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1498 14941..15016 -
1696845730.410646-CDS-H-canaliculatus_F_contig1498:14940..150161696845730.410646-CDS-H-canaliculatus_F_contig1498:14940..15016Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1498 14941..15016 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1498.3741.1

>prot_H-canaliculatus_F_contig1498.3741.1 ID=prot_H-canaliculatus_F_contig1498.3741.1|Name=mRNA_H-canaliculatus_F_contig1498.3741.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=108bp
MLKVITIPVFRLVMTVRAALTGRCHELSCRALDCEARTRSVNTLVEANLS
FSAGVEYGCVCRFGELASEPRLIMGQSCALVHLPSESAHDCHQPPPLHEC
DDNERKW*
back to top

mRNA from alignment at H-canaliculatus_F_contig1498:14469..15240-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1498.3741.1 ID=mRNA_H-canaliculatus_F_contig1498.3741.1|Name=mRNA_H-canaliculatus_F_contig1498.3741.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=772bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1498:14469..15240- (Hapterophycus canaliculatus Oshoro5f female)
GCGATGGAACATCTGTCGATGTTTAGCCACTTCATTGCAGAGAGAACTGT
TCGCCCGGCGGGATATTCGAGGGCCTATACAACCGGGACATGCGTGGTGC
CGCTGGCATTAGGTCGAGTGTTTTCACGAAATACTACTAGACGTTCGATC
TCCACGAAAGTTCAGCAGCATACCTTTGCCTTGGCTTCATCGCATGCTGC
CTAGACGCATCTGCTGCAATATGTATGTTAAAGGTTATCACAATCCCGGT
GTTCCGCCTCGTCATGACTGTGCGTGCGGCTCTCACAGGCAGGTGCCACG
GTCGGGGCGATCTTGGCGTTCCTGTTGGGCCGTTTCGTGCTCCAGGAGCA
GGCACAAGGACTATTCAACAAGTTCAAGGTTCTTACGGCCGTTAACAGGG
CCATCAAATCTCAGGGCTTGAAGCTTGTCATCCTCCTCCGCCTCTCCCCG
GTCGTGCCTTTCAGCGCCTTCAACTATGTCATGTGAGAACTCTCGTGTAG
AGCGTTAGATTGTGAAGCACGGACGAGGTCTGTGAACACGCTTGTAGAAG
CGAACCTTTCCTTTTCCGCAGGTGTGGAATATGGATGTGTTTGTCGATTC
GGGGAGCTTGCATCAGAACCTCGGTTGATCATGGGGCAGTCATGTGCACT
CGTCCACCTCCCTTCGGAAAGTGCACATGACTGCCATCAGCCCCCACCGC
TGCACGAATGCGACGACAACGAGAGAAAATGGTAGAACTCCCCCCTCCTA
TGTTCAATTGATGGCATGTACC
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1498:14469..15240-

>mRNA_H-canaliculatus_F_contig1498.3741.1 ID=mRNA_H-canaliculatus_F_contig1498.3741.1|Name=mRNA_H-canaliculatus_F_contig1498.3741.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=648bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1498:14469..15240- (Hapterophycus canaliculatus Oshoro5f female)
ATGTTAAAGGTTATCACAATCCCGGTGTTCCGCCTCGTCATGACTGTGCG
TGCGGCTCTCACAGGCAGGTGCCACGATGTTAAAGGTTATCACAATCCCG
GTGTTCCGCCTCGTCATGACTGTGCGTGCGGCTCTCACAGGCAGGTGCCA
CGAACTCTCGTGTAGAGCGTTAGATTGTGAAGCACGGACGAGGTCTGTGA
ACACGCTTGTAGAAGCGAACCTTTCCTTTTCCGCAGGTGTGGAATATGGA
TGTGTTTGTCGATTCGGGGAGCTTGCATCAGAACCTCGGTTGATCATGGG
GCAGTCATGTGCACTCGTCCACCTCCCTTCGGAAAGTGCACATGACTGCC
ATCAGCCCCCACCGCTGCACGAATGCGACGACAACGAGAGAAAATGGTAG
AACTCTCGTGTAGAGCGTTAGATTGTGAAGCACGGACGAGGTCTGTGAAC
ACGCTTGTAGAAGCGAACCTTTCCTTTTCCGCAGGTGTGGAATATGGATG
TGTTTGTCGATTCGGGGAGCTTGCATCAGAACCTCGGTTGATCATGGGGC
AGTCATGTGCACTCGTCCACCTCCCTTCGGAAAGTGCACATGACTGCCAT
CAGCCCCCACCGCTGCACGAATGCGACGACAACGAGAGAAAATGGTAG
back to top