mRNA_H-canaliculatus_F_contig14961.3734.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14961.3734.1
Unique NamemRNA_H-canaliculatus_F_contig14961.3734.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig14961.3734.1 vs. uniprot
Match: D8LIP8_ECTSI (RING-type E3 ubiquitin transferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIP8_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 8.720e-6
Identity = 22/27 (81.48%), Postives = 25/27 (92.59%), Query Frame = -1 
Query:  670 CIREVFVAMGPKCPTCSKMYGPLHGER 750
            CI +VF AMGPKCPTCSKMYGPLHG++
Sbjct:  258 CIMQVFKAMGPKCPTCSKMYGPLHGDQ 284
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14961.3734.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LIP8_ECTSI8.720e-681.48RING-type E3 ubiquitin transferase n=2 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14961contigH-canaliculatus_F_contig14961:749..1503 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size755
Cds size753
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929237.883857-CDS-H-canaliculatus_F_contig14961:748..15011622929237.883857-CDS-H-canaliculatus_F_contig14961:748..1501Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14961 749..1501 +
1696845730.2563212-CDS-H-canaliculatus_F_contig14961:748..15011696845730.2563212-CDS-H-canaliculatus_F_contig14961:748..1501Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14961 749..1501 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14961.3734.1prot_H-canaliculatus_F_contig14961.3734.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14961 749..1501 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14961.3734.1

>prot_H-canaliculatus_F_contig14961.3734.1 ID=prot_H-canaliculatus_F_contig14961.3734.1|Name=mRNA_H-canaliculatus_F_contig14961.3734.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=251bp
RGHNHQETKWSVRLFFRGHARSFLFFFLSCLSTPHQGLLIASRSTHQLPV
QETGKRRFFLGRYAYGLRTPGQRCIFQAMIAGWGWTTAPLNVSRRSGNMR
KACHHGRTPKSTKAPPKQLSRFSEDRRDVIATEGTTPTPIETDPLPRYGR
PTHVGCVYLFLVSGEITCNLARESDQGPTAAHKTTQDASVVVYARRTPPS
TPTQTRGARQRRAFLRWRGGLRSSLTVKRPVHLGAGGALGPHRNEDLADA
L
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mRNA from alignment at H-canaliculatus_F_contig14961:749..1503+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14961.3734.1 ID=mRNA_H-canaliculatus_F_contig14961.3734.1|Name=mRNA_H-canaliculatus_F_contig14961.3734.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=755bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14961:749..1503+ (Hapterophycus canaliculatus Oshoro5f female)
CGGGGACACAACCATCAAGAGACGAAGTGGTCTGTGAGGCTTTTCTTTCG
AGGTCATGCGAGATCCTTTCTTTTTTTTTTCCTTTCGTGCTTGTCTACGC
CACATCAAGGTCTGTTAATAGCTTCGAGATCCACGCACCAGCTCCCTGTG
CAGGAAACTGGTAAGCGTCGTTTTTTTTTAGGGCGATACGCTTACGGGCT
GCGAACCCCCGGGCAGCGGTGCATCTTTCAAGCCATGATTGCTGGGTGGG
GGTGGACGACCGCCCCCCTCAACGTCAGCAGGCGATCGGGAAACATGAGA
AAAGCGTGTCACCATGGCCGGACGCCAAAATCAACAAAGGCCCCGCCAAA
ACAGTTGAGCAGGTTCTCCGAGGACAGGCGTGATGTAATCGCAACAGAGG
GGACCACCCCCACCCCAATCGAAACAGATCCATTGCCCCGCTACGGGCGT
CCAACACATGTGGGTTGCGTTTATCTATTTTTGGTTTCGGGGGAAATCAC
ATGTAACTTAGCACGGGAATCCGACCAAGGGCCCACGGCCGCTCACAAAA
CCACACAAGACGCGTCCGTTGTCGTGTACGCGCGCCGAACCCCGCCGTCA
ACCCCAACCCAGACCAGGGGCGCAAGGCAGCGCCGCGCCTTCCTTCGCTG
GCGGGGAGGTCTCCGCTCCTCTCTCACCGTGAAGCGGCCCGTACATCTTG
GAGCAGGTGGGGCACTTGGGCCCCATCGCAACGAAGACCTCGCGGATGCA
CTCGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14961:749..1503+

>mRNA_H-canaliculatus_F_contig14961.3734.1 ID=mRNA_H-canaliculatus_F_contig14961.3734.1|Name=mRNA_H-canaliculatus_F_contig14961.3734.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1506bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14961:749..1503+ (Hapterophycus canaliculatus Oshoro5f female)
CGGGGACACAACCATCAAGAGACGAAGTGGTCTGTGAGGCTTTTCTTTCG
AGGTCATGCGAGATCCTTTCTTTTTTTTTTCCTTTCGTGCTTGTCTACGC
CACATCAAGGTCTGTTAATAGCTTCGAGATCCACGCACCAGCTCCCTGTG
CAGGAAACTGGTAAGCGTCGTTTTTTTTTAGGGCGATACGCTTACGGGCT
GCGAACCCCCGGGCAGCGGTGCATCTTTCAAGCCATGATTGCTGGGTGGG
GGTGGACGACCGCCCCCCTCAACGTCAGCAGGCGATCGGGAAACATGAGA
AAAGCGTGTCACCATGGCCGGACGCCAAAATCAACAAAGGCCCCGCCAAA
ACAGTTGAGCAGGTTCTCCGAGGACAGGCGTGATGTAATCGCAACAGAGG
GGACCACCCCCACCCCAATCGAAACAGATCCATTGCCCCGCTACGGGCGT
CCAACACATGTGGGTTGCGTTTATCTATTTTTGGTTTCGGGGGAAATCAC
ATGTAACTTAGCACGGGAATCCGACCAAGGGCCCACGGCCGCTCACAAAA
CCACACAAGACGCGTCCGTTGTCGTGTACGCGCGCCGAACCCCGCCGTCA
ACCCCAACCCAGACCAGGGGCGCAAGGCAGCGCCGCGCCTTCCTTCGCTG
GCGGGGAGGTCTCCGCTCCTCTCTCACCGTGAAGCGGCCCGTACATCTTG
GAGCAGGTGGGGCACTTGGGCCCCATCGCAACGAAGACCTCGCGGATGCA
CTCCGGGGACACAACCATCAAGAGACGAAGTGGTCTGTGAGGCTTTTCTT
TCGAGGTCATGCGAGATCCTTTCTTTTTTTTTTCCTTTCGTGCTTGTCTA
CGCCACATCAAGGTCTGTTAATAGCTTCGAGATCCACGCACCAGCTCCCT
GTGCAGGAAACTGGTAAGCGTCGTTTTTTTTTAGGGCGATACGCTTACGG
GCTGCGAACCCCCGGGCAGCGGTGCATCTTTCAAGCCATGATTGCTGGGT
GGGGGTGGACGACCGCCCCCCTCAACGTCAGCAGGCGATCGGGAAACATG
AGAAAAGCGTGTCACCATGGCCGGACGCCAAAATCAACAAAGGCCCCGCC
AAAACAGTTGAGCAGGTTCTCCGAGGACAGGCGTGATGTAATCGCAACAG
AGGGGACCACCCCCACCCCAATCGAAACAGATCCATTGCCCCGCTACGGG
CGTCCAACACATGTGGGTTGCGTTTATCTATTTTTGGTTTCGGGGGAAAT
CACATGTAACTTAGCACGGGAATCCGACCAAGGGCCCACGGCCGCTCACA
AAACCACACAAGACGCGTCCGTTGTCGTGTACGCGCGCCGAACCCCGCCG
TCAACCCCAACCCAGACCAGGGGCGCAAGGCAGCGCCGCGCCTTCCTTCG
CTGGCGGGGAGGTCTCCGCTCCTCTCTCACCGTGAAGCGGCCCGTACATC
TTGGAGCAGGTGGGGCACTTGGGCCCCATCGCAACGAAGACCTCGCGGAT
GCACTC
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