mRNA_H-canaliculatus_F_contig14942.3723.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14942.3723.1
Unique NamemRNA_H-canaliculatus_F_contig14942.3723.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig14942.3723.1 vs. uniprot
Match: D7FQT4_ECTSI (U1 small nuclear ribonucleoprotein C n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQT4_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 1.970e-7
Identity = 24/28 (85.71%), Postives = 26/28 (92.86%), Query Frame = 1 
Query:    1 GWKHTDNVKLHYKQFLDDFVKNQAANGG 84
            GWKHTDNVKLHYKQFL+ FV+ QAANGG
Sbjct:   27 GWKHTDNVKLHYKQFLEKFVQQQAANGG 54
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14942.3723.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FQT4_ECTSI1.970e-785.71U1 small nuclear ribonucleoprotein C n=1 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14942contigH-canaliculatus_F_contig14942:1095..2215 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionZinc finger, U1-C type
Ec32 orthologEc-16_000640.1
Hectar predicted targeting categoryother localisation
Exons3
Model size501
Cds size501
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14942.3723.1prot_H-canaliculatus_F_contig14942.3723.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14942 1095..2215 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929236.4550135-CDS-H-canaliculatus_F_contig14942:1094..11801622929236.4550135-CDS-H-canaliculatus_F_contig14942:1094..1180Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14942 1095..1180 +
1696845729.510691-CDS-H-canaliculatus_F_contig14942:1094..11801696845729.510691-CDS-H-canaliculatus_F_contig14942:1094..1180Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14942 1095..1180 +
1622929236.472996-CDS-H-canaliculatus_F_contig14942:1583..17101622929236.472996-CDS-H-canaliculatus_F_contig14942:1583..1710Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14942 1584..1710 +
1696845729.5224261-CDS-H-canaliculatus_F_contig14942:1583..17101696845729.5224261-CDS-H-canaliculatus_F_contig14942:1583..1710Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14942 1584..1710 +
1622929236.4869802-CDS-H-canaliculatus_F_contig14942:1927..22151622929236.4869802-CDS-H-canaliculatus_F_contig14942:1927..2215Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14942 1928..2215 +
1696845729.5393364-CDS-H-canaliculatus_F_contig14942:1927..22151696845729.5393364-CDS-H-canaliculatus_F_contig14942:1927..2215Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14942 1928..2215 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14942.3723.1

>prot_H-canaliculatus_F_contig14942.3723.1 ID=prot_H-canaliculatus_F_contig14942.3723.1|Name=mRNA_H-canaliculatus_F_contig14942.3723.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=167bp
GWKHTDNVKLHYKQFLDDFVKNQAANGGDVGSGQMSTGPMPMGPQAGPRG
PMGSGSLGMGAMNNSLMPGGMMGGGPPMGGGPMMSGPRPGGFMGGGPPMG
GGPMMGAPRPGGFMGGLPPMGGGPMMGGPRPGAFMGPGPGPMGGGPPRGP
MPPQAPPINGNGPGTA*
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mRNA from alignment at H-canaliculatus_F_contig14942:1095..2215+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14942.3723.1 ID=mRNA_H-canaliculatus_F_contig14942.3723.1|Name=mRNA_H-canaliculatus_F_contig14942.3723.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1121bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14942:1095..2215+ (Hapterophycus canaliculatus Oshoro5f female)
GGTTGGAAGCATACCGACAACGTCAAGCTGCACTACAAACAGTTCTTGGA
TGACTTCGTGAAGAATCAGGCTGCCAACGGCGGTGAGTGACATGGTTGTG
GTCGTGGCAGCTCGCTCGTTCGTAGTACACCTTCGCTTGTGCACTCAACT
GTTTGCGCGAAACGTCGGCTCTGTTGTGTCGGAACGGCATAATTTGGTCG
AACAACGCCCGGTCTTTGTTGCTCTCGTGTCTGTGTGGTGCCCTTTTGCA
AACGTTCATGGGTGGACATGTGAACTTCATGGCGAAGGCTACCTCAATTG
TTGCCAGGAACAGATGGTAATGCAGCAGCTCTGCGAAGAGCAAAATTAAG
GTCAAAACTCTTGGATTGGAAGCGTCAAACAAATTTCTAGAAACGTGCCG
AGTTGCACATTTCCGACCATTGATGCCCTCATCTGTCTTTATCTGTCTCC
ACCCTCCCCCGGGCTTTAAAACCCAGCCGTGGGACCCAGCGTGGGGAGTG
GCCAGATGTCGACTGGACCGATGCCGATGGGCCCCCAAGCTGGCCCCAGA
GGTCCGATGGGCTCGGGATCTCTTGGCATGGGTGCCATGAACAACTCGCT
CATGCCTGGAGGGATGGTGAGTGTCTCATCTTTCATAAACTACGAGCAGG
TCGTATCTCCTTTGCTACATGGGTCGTTTTGTCTCAAAAATGTAGACTGG
CGTAAATCTGATGTTTGTGTTGCATTTTCGTCTGCAATCGCATGACCTCA
CTCTCCGCAATCCACACTCAAGCTTGTATCACTTCGCTGCCTCTGACCTT
TCTTAATCAAAACAAATTAAGGGGCGCGGCCAGATGGGTGGAGGGCCCCC
CATGGGTGGAGGACCAATGATGAGTGGACCGCGCCCGGGTGGTTTCATGG
GTGGAGGACCACCGATGGGCGGAGGACCAATGATGGGTGCGCCACGTCCG
GGTGGGTTTATGGGTGGATTACCGCCAATGGGTGGTGGACCCATGATGGG
TGGGCCACGTCCAGGGGCGTTCATGGGTCCTGGCCCCGGACCGATGGGAG
GTGGACCGCCTCGGGGCCCGATGCCTCCTCAAGCTCCCCCTATCAACGGC
AACGGTCCTGGTACAGCATGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14942:1095..2215+

>mRNA_H-canaliculatus_F_contig14942.3723.1 ID=mRNA_H-canaliculatus_F_contig14942.3723.1|Name=mRNA_H-canaliculatus_F_contig14942.3723.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1002bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14942:1095..2215+ (Hapterophycus canaliculatus Oshoro5f female)
GGTTGGAAGCATACCGACAACGTCAAGCTGCACTACAAACAGTTCTTGGA
TGACTTCGTGAAGAATCAGGCTGCCAACGGCGGTGAGGTTGGAAGCATAC
CGACAACGTCAAGCTGCACTACAAACAGTTCTTGGATGACTTCGTGAAGA
ATCAGGCTGCCAACGGCGGTGACGTGGGGAGTGGCCAGATGTCGACTGGA
CCGATGCCGATGGGCCCCCAAGCTGGCCCCAGAGGTCCGATGGGCTCGGG
ATCTCTTGGCATGGGTGCCATGAACAACTCGCTCATGCCTGGAGGGATGC
GTGGGGAGTGGCCAGATGTCGACTGGACCGATGCCGATGGGCCCCCAAGC
TGGCCCCAGAGGTCCGATGGGCTCGGGATCTCTTGGCATGGGTGCCATGA
ACAACTCGCTCATGCCTGGAGGGATGATGGGTGGAGGGCCCCCCATGGGT
GGAGGACCAATGATGAGTGGACCGCGCCCGGGTGGTTTCATGGGTGGAGG
ACCACCGATGGGCGGAGGACCAATGATGGGTGCGCCACGTCCGGGTGGGT
TTATGGGTGGATTACCGCCAATGGGTGGTGGACCCATGATGGGTGGGCCA
CGTCCAGGGGCGTTCATGGGTCCTGGCCCCGGACCGATGGGAGGTGGACC
GCCTCGGGGCCCGATGCCTCCTCAAGCTCCCCCTATCAACGGCAACGGTC
CTGGTACAGCATGAATGGGTGGAGGGCCCCCCATGGGTGGAGGACCAATG
ATGAGTGGACCGCGCCCGGGTGGTTTCATGGGTGGAGGACCACCGATGGG
CGGAGGACCAATGATGGGTGCGCCACGTCCGGGTGGGTTTATGGGTGGAT
TACCGCCAATGGGTGGTGGACCCATGATGGGTGGGCCACGTCCAGGGGCG
TTCATGGGTCCTGGCCCCGGACCGATGGGAGGTGGACCGCCTCGGGGCCC
GATGCCTCCTCAAGCTCCCCCTATCAACGGCAACGGTCCTGGTACAGCAT
GA
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