mRNA_H-canaliculatus_F_contig1494.3721.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig1494.3721.1 vs. uniprot
Match: D7G2R7_ECTSI (Protein RFT1 homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2R7_ECTSI) HSP 1 Score: 415 bits (1067), Expect = 7.950e-128 Identity = 266/428 (62.15%), Postives = 290/428 (67.76%), Query Frame = 3
Query: 1359 GGSLYEQGVYAIASGYGSLAARLLFQPLEEAARLMFSKLGAEEEVGGSARPQGVRQVSPGKSPAAARGKMEGVSARSWDERDGGPRGQDADGG-GDDGVSGSPVNEGR-RLRERMAVLLATLLKLVLTAGLVFVCFGFHYTETLLRLLMAGKGXXXXXXXXXSAMSEVARVLSWYCVYVLFLAANGMCEAFACAVARGRQLTGMGAGLVASFAAFWGLVGPLTGRFGTRGLVMANAAGMACRVICSAAFIRRFFLQGTPVATLA---ETAHDCAGSGGADIGVLKSDRTWDHTRFAPS-APPGEGQEGE-TPKRRNLWREVVAGALPHPGVVTAMGLSSAVAYATSPPVH-----DGGVPWDVTGAAKHVGFGLACFVMTAAVFAKYEGDFFREISALWTARRRPSH--GTRSAGGDCA-VDGRHKQD 2597
GG+LYEQGVYAIASGYGSLAARLLFQPLEEAARLMFSKLGAE G +R V S A G R GG QD GG G +G S G+ RLR +MA LLATLLKLVL AGLVFVCFGFHYTETLLRLL+AGKG SA+SEVARVLSWYCVYVLFLAANGMCEAFACAVA+G QLTGMGAGLVASFAAFW LVGPLTGRFGTRGLVMANAAGMACRVICS FIRRFFL+ T AT + D A SG + L + + PS APP G+ + T +RNLWREVV GA+PHPGVV+ M LSSA AYATSP +GG P D AAKHVG GL CF++TAAVF K EG F RE+ ALW ARR P G + GD A +DG K D
Sbjct: 353 GGTLYEQGVYAIASGYGSLAARLLFQPLEEAARLMFSKLGAEA---GESRQGAVPPAVTATSKALTMGATHSSLGRG-----GGQGRQDGGGGYGQEGDSTDGAANGKLRLRAKMASLLATLLKLVLMAGLVFVCFGFHYTETLLRLLLAGKGGGGGF----SAVSEVARVLSWYCVYVLFLAANGMCEAFACAVAQGGQLTGMGAGLVASFAAFWVLVGPLTGRFGTRGLVMANAAGMACRVICSGLFIRRFFLRRTTPATPSLKPAAVGDRAASG--ESSRLSPSGSPHRSPSEPSRAPPNGGERRKKTATKRNLWREVVTGAVPHPGVVSIMALSSAAAYATSPAARHVAGGNGGAPLD---AAKHVGVGLVCFLVTAAVFVKCEGAFLRELGALWAARRPPGPDAGRGAGSGDAAALDGADKSD 763
BLAST of mRNA_H-canaliculatus_F_contig1494.3721.1 vs. uniprot
Match: W7U1L1_9STRA (Protein RFT1 homolog n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U1L1_9STRA) HSP 1 Score: 162 bits (409), Expect = 7.080e-38 Identity = 141/409 (34.47%), Postives = 181/409 (44.25%), Query Frame = 3
Query: 1359 GGSLYEQGVYAIASGYGSLAARLLFQPLEEAARLMFSKLGAEEEVGGSARPQGVRQVSPGKSPAAARGKMEGVSARSWDERDGGPRGQDADGGGDDGVSGSPVNEGRRLRERMAVLLATLLKLVLTAGLVFVCFGFHYTETLLRLLMAGKGXXXXXXXXXSAMSEVARVLSWYCVYVLFLAANGMCEAFACAVARGRQLTGMGAGLVASFAAFWGLVGPLTGRFGTRGLVMANAAGMACRVICSAAFIRRFFLQGTPVATLAETAHDCAGSGGADIGVLKSDRTWDHTRFAPSAPPGEGQEGETPKRRNLWREVVAGALPHPGVVTAMGLSSAVAYATSPPVHDGGVPWD-VTGAAKHVGFGLACFVMTAAVFAKYEGDFFREISALWTARRRPSHGTRSAGGDCAVDG 2582
G S Y QG+YA+A YGSLAARLLFQPLEE+ RLMF++L A GG G K K E ++ + D R G G+ E + + VL+ L+K V+ GLVF CFGF+YT LLRLL+ G+ EV LSWYC+YVLFLA NGM EAF AVA + + +GA SFA F GL P GT GLV+AN AGM R++ S F+R +F GV+ + + +G EG RE PHP V+ + + A YA+ + V D V KHV FG F E DFF ++ ++ RR + G R G A G
Sbjct: 280 GSSHYSQGLYALAQNYGSLAARLLFQPLEESGRLMFARLAAGN--GGVVGEDGAEAADDKKXX-----KTE--TSVATDHRRG---------------RGAEPGESAASQAMLKVLVGALVKTVILVGLVFACFGFNYTRVLLRLLLPGRRWETGAGVGAEGSGEV---LSWYCLYVLFLAVNGMTEAFVYAVATQQDVVRLGALAAVSFAVFAGLTFPFIRWHGTVGLVLANCAGMLVRILFSIHFVRAYF-----------------------DGVVSTRKQ-------------DGGEGHVSSTMLSTREKQPDMFPHPVVLASFVAAFAATYASDKTL----VSVDEVEPVLKHVVFGGMVFTGVLGSILWTEQDFFEDLKSI----RRLATGRREEAGSKAKSG 617
BLAST of mRNA_H-canaliculatus_F_contig1494.3721.1 vs. uniprot
Match: A0A835YPZ4_9STRA (Protein RFT1 homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPZ4_9STRA) HSP 1 Score: 121 bits (304), Expect = 2.870e-25 Identity = 88/200 (44.00%), Postives = 110/200 (55.00%), Query Frame = 1
Query: 718 QAASLVCLAAAVELMCEPLALIFQYRLLIDVRVRAESAAVLVLGLSRYLLVTRARMGVLSFGYAQLLHSATLATAYVLFAAKDVSRAKAAPTRAPPAPPQRRSQSVGPETEETEKSAPGRDEMVSVAEEARG---FARVRGWLPSRPIQNRSDGSAEKESWVDRGKLGLAGALAGQSLLKHVLTEGDKIVLARATSLGQG 1308
QAA LVCLAAA+EL CEP LIFQ+RL++ VRVRAE+AAVL+LG+++YLLVTRA +GV++FGYAQLLHS L AY ++V ++ A +A E S + G F R WLP G A + + +L L GQS KH+LTEGDKIVLARA QG
Sbjct: 7 QAAGLVCLAAALELACEPAVLIFQWRLMLGVRVRAEAAAVLILGVAKYLLVTRAGLGVVAFGYAQLLHSCALIVAYAAAVTREVRQSSVRVAAAA--------------------AALRGSEGASAKGDGGGAGPFGRAAFWLP---------GGAWGQGSTQQVRL--VALLGGQSAFKHLLTEGDKIVLARAHGHRQG 175
BLAST of mRNA_H-canaliculatus_F_contig1494.3721.1 vs. uniprot
Match: UPI001E8DF673 (oligosaccharide translocation protein RFT1 n=1 Tax=Boeremia exigua TaxID=749465 RepID=UPI001E8DF673) HSP 1 Score: 95.5 bits (236), Expect = 1.390e-16 Identity = 88/260 (33.85%), Postives = 117/260 (45.00%), Query Frame = 3
Query: 1365 SLYEQGVYAIASGYGSLAARLLFQPLEEAARLMFSKLGAEEEVGGSARPQGVRQVSPGKSPAAARGKMEGVSARSWDERDGGPRGQDADGGGDDGVSGSPVNEGRRLRERMAVLLATLLKLVLTAGLVFVCFGFHYTETLLRLLMAGKGXXXXXXXXXSAMSEVARVLSWYCVYVLFLAANGMCEAFACAVARGRQLTGMGAGLVASFAAF----WGLVGPLTGRFGTRGLVMANAAGMACRVICSAAFIRRFFLQ-GTP 2129
SL +QG YA+AS YG L AR+LFQP+EE++R MF+KL A E SA + D GPR Q E RR + A +L +L+L L V G LL ++ AGK + + + VL+ YC Y+ FLA NG+ E F AVA +QL + FAAF W +G L + G G+V+AN MA R++ + F RFF Q GTP
Sbjct: 260 SLADQGAYALASNYGGLIARMLFQPIEESSRNMFAKLCASSE-----------------------------SASDATKTDNGPREQ----------------EQRRNLSQAAKVLTVILRLYAIVSLFAVTLGPTLAPLLLSVV-AGKKW---------SATNASNVLATYCYYIPFLAINGVTEGFVAAVATNKQLYVQSISMGFFFAAFAGSAWFFLGQL--QLGGSGVVLANTVNMALRIVWNTWFTTRFFNQKGTP 462
BLAST of mRNA_H-canaliculatus_F_contig1494.3721.1 vs. uniprot
Match: A0A5D6Y2D6_9STRA (Protein RFT1 homolog n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y2D6_9STRA) HSP 1 Score: 92.4 bits (228), Expect = 1.470e-15 Identity = 105/395 (26.58%), Postives = 150/395 (37.97%), Query Frame = 3
Query: 1365 SLYEQGVYAIASGYGSLAARLLFQPLEEAARLMFSKLGAEEEVGGSARPQGVRQVSPGKSPAAARGKMEGVSARSWDERDGGPRGQDADGGGDDGVSGSPVNEGRRLRERMAVLLATLLKLVLTAGLVFVCFGFHYTETLLRLLMAGKGXXXXXXXXXSAMSEVARVLSWYCVYVLFLAANGMCEAFACAVARGRQLTGMG---AGLVASFAAFWGLVGPLTGRFGTRGLVMANAAGMACRVICSAAFIRRFFLQGTPVATLAETAHDCAGSGGADIGVLKSDRTWDHTRFAPSAPPGEGQEGETPKRRNLWREVVAGALPHPGVVTAMGLSSAVAYATSPPVHDGGVPWDVTGAAKHVGFGLACFVMTA-AVFAKYEGDFFREISALWTARRRP 2537
S GVY I GSL R++F P+EEA + +FSK+ + + S ++P+A DG L+ LLKL+ G VF CFG +Y TL+ LL + A V+ L+ YCVY+LFL NG+CEAF AV QL + AG +AA L + GT G+V+AN M CR++ +F+ F+ G A G++ WR+ +LPH V+ A G+S AV A+S + G A HV G ACF A A++AK +++ L + R+P
Sbjct: 282 SFQNMGVYGIVFHLGSLVPRIVFLPIEEATKTIFSKMASHRAESSDS------SSSSSQAPSAH-----------------------------DGFH----------------LVLVLLKLMHVVGFVFACFGVNYAHTLVLLLYGAE----------KARLGVSDALAVYCVYILFLGLNGICEAFVHAVGSAAQLMRLNKLMAGFFVLYAASAALFMSAL-QLGTPGIVLANCVNMGCRILYCLSFMAAHFVGGKDAAR----------------GLIA-----------------------------FWRQ----SLPHRAVLLAFGVSFAVTSASSRLLLGGAHSESWPRHALHVAIGAACFAGVALALYAKERRLLLEQLAVLRRSNRQP 565
BLAST of mRNA_H-canaliculatus_F_contig1494.3721.1 vs. uniprot
Match: A0A662YBG2_9STRA (Protein RFT1 homolog n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YBG2_9STRA) HSP 1 Score: 92.4 bits (228), Expect = 1.510e-15 Identity = 79/257 (30.74%), Postives = 110/257 (42.80%), Query Frame = 3
Query: 1365 SLYEQGVYAIASGYGSLAARLLFQPLEEAARLMFSKLGAEEEVGGSARPQGVRQVSPGKSPAAARGKMEGVSARSWDERDGGPRGQDADGGGDDGVSGSPVNEGRRLRERMAVLLATLLKLVLTAGLVFVCFGFHYTETLLRLLMAGKGXXXXXXXXXSAMSEVARVLSWYCVYVLFLAANGMCEAFACAVARGRQLTGMGAGLVASFA--AFWGLVGPLTGRFGTRGLVMANAAGMACRVICSAAFIRRFFLQGTP 2129
SL G+Y + S GSL R++F P+EEA + +FSKL ++ +Q S K + R M A++ LL LLKL+ GL+FVCFG Y TL+ LL + A V L+ YC+Y+ FL NG+CEA AV RQL + L FA AF LV +GT GL++AN M+CR++ F+ +F + P
Sbjct: 283 SLQHMGIYGLVSNLGSLVPRIVFLPIEEATKTIFSKLATAQK----------QQNSDAKGSESKRTSM--TEAKT--------------------------------------LLLVLLKLMNLVGLLFVCFGTSYARTLVLLLYGAE----------KAQQGVGGALAVYCIYIPFLGINGVCEAVVHAVGDDRQLMRLNKILGVFFAVYAFSALVFMQLLNWGTTGLILANCVNMSCRILYCLVFLASYFGREDP 479
BLAST of mRNA_H-canaliculatus_F_contig1494.3721.1 vs. uniprot
Match: A0A4Q4NK11_ALTAL (Oligosaccharide translocation protein RFT1 n=8 Tax=Alternaria TaxID=5598 RepID=A0A4Q4NK11_ALTAL) HSP 1 Score: 91.7 bits (226), Expect = 2.310e-15 Identity = 80/254 (31.50%), Postives = 113/254 (44.49%), Query Frame = 3
Query: 1365 SLYEQGVYAIASGYGSLAARLLFQPLEEAARLMFSKLGAEEEVGGSARPQGVRQVSPGKSPAAARGKMEGVSARSWDERDGGPRGQDADGGGDDGVSGSPVNEGRRLRERMAVLLATLLKLVLTAGLVFVCFGFHYTETLLRLLMAGKGXXXXXXXXXSAMSEVARVLSWYCVYVLFLAANGMCEAFACAVARGRQLTGMGAGLVASFAAF----WGLVGPLTGRFGTRGLVMANAAGMACRVICSAAFIRRFF 2114
SL +QG YA+AS YG L AR+LFQP+EE++R MF+KL A +G S G + P KS NE + + + +L+T+L+L L V G LL ++ K + + ++VLS YC Y+ FLA NG+ EAF AVA ++L + FA F W +G L G G+V+AN M R++ + FIRRFF
Sbjct: 260 SLADQGAYALASNYGGLIARMLFQPIEESSRNMFAKLCAN--IGSS---PGTEKKDPKKS-----------------------------------------NEQKDNLAQASRVLSTILRLYGIISLFAVTLGPELAPVLLSIVAGQKW----------SATSASKVLSTYCYYIPFLAINGVTEAFVAAVATNKELYAQSVSMGIFFALFAGSAWFFIGKL--EMGGNGVVLANTVNMGLRIVWNTWFIRRFF 455
BLAST of mRNA_H-canaliculatus_F_contig1494.3721.1 vs. uniprot
Match: A0A6A7B765_9PLEO (Oligosaccharide translocation protein RFT1 n=1 Tax=Plenodomus tracheiphilus IPT5 TaxID=1408161 RepID=A0A6A7B765_9PLEO) HSP 1 Score: 91.7 bits (226), Expect = 2.340e-15 Identity = 83/256 (32.42%), Postives = 118/256 (46.09%), Query Frame = 3
Query: 1365 SLYEQGVYAIASGYGSLAARLLFQPLEEAARLMFSKLGAEEEVGGSARPQGVRQVSPGKSPAAARGKMEGVSARSWDERDGGPRGQDADGGGDDGVSGSPVNEGRRLRERMAVLLATLLKLVLTAGLVFVCFGFHYTETLLRLLMAGKGXXXXXXXXXSAMSEVARVLSWYCVYVLFLAANGMCEAFACAVARGRQLTGMGAGLVASFAAF----WGLVGPLTGRFGTRGLVMANAAGMACRVICSAAFIRRFFLQ 2120
SL +QG YA+AS YG L AR+LFQP+EE++R MF+KL A+ E SP+ K E P Q E ++ ++ + +L T+L+L L V G TLL ++ AGK + + ++VLS YC Y+ FLA NG+ E F AVA +QL + F F W L+G L + G G+V+AN M+ R + + FI+RFF Q
Sbjct: 260 SLADQGAYALASNYGGLIARMLFQPIEESSRNMFAKLCADTEP----------------SPSTQGSKEE-------------PNKQ----------------EHKQNLDQASRVLTTILRLYSIISLFAVTLGPVLAPTLLSII-AGKKW---------SATSASQVLSTYCFYIPFLAINGVTEGFVAAVATNKQLYAQSVSMGIFFVLFAGSAWFLIGQL--QLGGNGVVLANTVNMSLRAVWNIWFIKRFFGQ 458
BLAST of mRNA_H-canaliculatus_F_contig1494.3721.1 vs. uniprot
Match: A0A6A5SD61_9PLEO (Oligosaccharide translocation protein RFT1 n=1 Tax=Clathrospora elynae TaxID=706981 RepID=A0A6A5SD61_9PLEO) HSP 1 Score: 92.8 bits (229), Expect = 2.350e-15 Identity = 80/256 (31.25%), Postives = 118/256 (46.09%), Query Frame = 3
Query: 1365 SLYEQGVYAIASGYGSLAARLLFQPLEEAARLMFSKLGAEEEVGGSARPQGVRQVSPGKSPAAARGKMEGVSARSWDERDGGPRGQDADGGGDDGVSGSPVNEGRRLRERMAVLLATLLKLVLTAGLVFVCFGFHYTETLLRLLMAGKGXXXXXXXXXSAMSEVARVLSWYCVYVLFLAANGMCEAFACAVARGRQLTGMGAGLVASFAAF----WGLVGPLTGRFGTRGLVMANAAGMACRVICSAAFIRRFFLQ 2120
SL +QG YA+AS YG L AR+LFQP+EE++R MF+KL A V A+ QG ++ ++ DE+ ++ + + +L+T+L+L L V G LL ++ K + + A+VLS YC Y+ FLA NG+ EAF AVA ++L + F F W +G L G G+V+AN MA R++ + FIRRFF+Q
Sbjct: 260 SLADQGAYALASNYGGLIARMLFQPIEESSRNMFAKLCAN--VDPEAKAQGTTEL------------------KNTDEQ-------------------------KQNLSQASRVLSTILRLYGIISLFAVTLGPVLAPLLLSIVAGQKW----------SATSAAKVLSTYCYYIPFLAINGVTEAFVAAVATNKELYAQSVTMGIFFVLFAGSAWFFIGQL--EMGGNGVVLANTVNMALRIVWNTWFIRRFFVQ 458
BLAST of mRNA_H-canaliculatus_F_contig1494.3721.1 vs. uniprot
Match: A0A3M6VAT0_9STRA (Protein RFT1 homolog n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VAT0_9STRA) HSP 1 Score: 91.3 bits (225), Expect = 2.520e-15 Identity = 77/254 (30.31%), Postives = 110/254 (43.31%), Query Frame = 3
Query: 1365 SLYEQGVYAIASGYGSLAARLLFQPLEEAARLMFSKLGAEEEVGGSARPQGVRQVSPGKSPAAARGKMEGVSARSWDERDGGPRGQDADGGGDDGVSGSPVNEGRRLRERMAVLLATLLKLVLTAGLVFVCFGFHYTETLLRLLMAGKGXXXXXXXXXSAMSEVARVLSWYCVYVLFLAANGMCEAFACAVARGRQLTGMGAGLVASFA--AFWGLVGPLTGRFGTRGLVMANAAGMACRVICSAAFIRRFFLQ 2120
SL GVY + S GSL R++F P+EEA + +FSKL ++ + D+R + +P + + L + +LL LLKL+ GLVFVCFG Y TL+ +L + A V L+ YCVY+ FL NG+CEA A+ R+L + L FA AF LV +GT GL++AN M CR++ F+ +F Q
Sbjct: 208 SLQHMGVYGLVSNLGSLVPRIVFLPIEEATKTIFSKLALAQK-------------------------------KERDDR-----------------NDTPTTKKKSLDDGQTLLLV-LLKLMNLVGLVFVCFGTSYAHTLVLMLYGAE----------KASHGVGAALALYCVYIPFLGVNGICEAVVHAIGDDRELMRLNKLLGVFFAIYAFSALVFMQVLDWGTFGLILANCINMGCRILYCLTFLAWYFRQ 402 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1494.3721.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1494.3721.1 >prot_H-canaliculatus_F_contig1494.3721.1 ID=prot_H-canaliculatus_F_contig1494.3721.1|Name=mRNA_H-canaliculatus_F_contig1494.3721.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=487bp MELRRRKDQAPGPAVGDRSEGAGTTSAKGLELDQHRQRKNPLNNNGGLPAback to top mRNA from alignment at H-canaliculatus_F_contig1494:15622..21004+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig1494.3721.1 ID=mRNA_H-canaliculatus_F_contig1494.3721.1|Name=mRNA_H-canaliculatus_F_contig1494.3721.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=5383bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1494:15622..21004+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1494:15622..21004+ >mRNA_H-canaliculatus_F_contig1494.3721.1 ID=mRNA_H-canaliculatus_F_contig1494.3721.1|Name=mRNA_H-canaliculatus_F_contig1494.3721.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2922bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1494:15622..21004+ (Hapterophycus canaliculatus Oshoro5f female)back to top |