mRNA_H-canaliculatus_F_contig1494.3719.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1494.3719.1
Unique NamemRNA_H-canaliculatus_F_contig1494.3719.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig1494.3719.1 vs. uniprot
Match: D7G2R5_ECTSI (DUF2040 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2R5_ECTSI)

HSP 1 Score: 421 bits (1082), Expect = 6.170e-142
Identity = 263/370 (71.08%), Postives = 284/370 (76.76%), Query Frame = 1
Query:    1 MKKSSVKFGLIGTASSLKKGASG-----GKARPIGSKPAPRRRPPGATSVFDANSDDEDGPT-GDVGGVAAVNKRLAAISAKQEKQAKKEYEDALEADPSVFDYDRVYDGMKESRDSNAAAATVAREKEKRQPKYIGNLLKQAKMRAVESDRIFDRKLQKEREEQDKLEGEATMKFVTSAYKKKLMEQKKWELQQQLEEERETRNDVTKTGMSGFYSNLITKNIAMGGDVEKSANSAFTAGSKRHAATAEYEMQDGNAKPAAETPTT-----------ASPQDTATSGG-EGGTGGRXXXXXXXXXXXXXXXXXXPSARMVDPRAASSKKSRDGAEGRDGENVYRESDSSRVRRREDGDAEEDPAKRARM 1056
            M+KS VKFGLIGTASSLKKG+S      G+ RPIGSKPAPRRRP G+TSVFDANSDDE+  + GD+ GV AVNKRLAAISAKQEKQAKKEYEDAL+ADPSVFDYDRVYDGMKESR+S  AAATVAREKEKRQPKYIGNLLKQAKMRAVESDRIFDRKLQKERE QDKLEGEATMKFVTSAYKKKLMEQKKWELQQQLE+ERE RNDVTKTGM GFYSNLITKNIAMGGDVEKSANSAFTAGSKRHAAT EYEMQDGN +                     P + A+ GG EG  GG                   P+ARMVDPRA   KKSR     RD   V R+S+ S  RR + G+A ++ AKRAR+
Sbjct:    1 MRKSGVKFGLIGTASSLKKGSSSAAGAAGRGRPIGSKPAPRRRPAGSTSVFDANSDDEEEDSKGDLSGVTAVNKRLAAISAKQEKQAKKEYEDALQADPSVFDYDRVYDGMKESRESKVAAATVAREKEKRQPKYIGNLLKQAKMRAVESDRIFDRKLQKEREAQDKLEGEATMKFVTSAYKKKLMEQKKWELQQQLEDEREQRNDVTKTGMGGFYSNLITKNIAMGGDVEKSANSAFTAGSKRHAATDEYEMQDGNEQAXXXXXXXXXXXXXXXXXEGGPANGASQGGREGRDGG-----DADSSPGRTDESGGPTARMVDPRAGEQKKSR-----RDEAGV-RDSERSGRRRGDSGEAVDNVAKRARL 359          
BLAST of mRNA_H-canaliculatus_F_contig1494.3719.1 vs. uniprot
Match: A0A835YZI8_9STRA (Coiled-coil domain-containing protein 55-domain containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZI8_9STRA)

HSP 1 Score: 196 bits (498), Expect = 1.450e-56
Identity = 133/249 (53.41%), Postives = 167/249 (67.07%), Query Frame = 1
Query:   19 KFGLIGTASSLKKGASGGKARPIGSKPAPRRRPPGATSVFDANSDDEDGPTG-DVGGVAAVNKRLAAISAKQEKQAKKEYEDALEADPSVFDYDRVYDGMKESRDSNAAAATVAR--EKEKR-QPKYIGNLLKQAKMRAVESDRIFDRKLQKEREEQDKLEGEATMKFVTSAYKKKLMEQKKWELQQQLEEERETRNDVTKT---GMSGFYSNLITKNIAMGGDVEKSANSAFTAGSKRHAATAEYEMQ 744
            ++GL+G A +LK  +   K      K AP R P  A + F  +SD + G    D    AAVN+RLAA  A++ ++ +K    A+  DPSVFDYD VYD + + RD  AAAA  AR  +K KR QP+YIGNLL+QAK+R VE DR++DRKL KEREE DK  G A MKFVTSAYK KLMEQKKWE+ Q+ E ERE + +       GM+ FYSNL+TKNIAMGGDV   A SAFTAGS+RHAA A ++++
Sbjct:    3 RYGLLGNAKTLKAQSVAAKTAKAPRK-APARGP--AVAAFGDDSDSDGGAGAEDPTSRAAVNRRLAAEQAERARRMEKVAVQAVMDDPSVFDYDGVYDEVSKGRDDKAAAAAAARGNDKTKRLQPRYIGNLLEQAKLRTVEQDRVYDRKLAKEREEGDKEFGAAEMKFVTSAYKAKLMEQKKWEVAQEREAEREAQAEADMKRGGGMTAFYSNLLTKNIAMGGDVAN-ATSAFTAGSRRHAAAAAFKVK 247          
BLAST of mRNA_H-canaliculatus_F_contig1494.3719.1 vs. uniprot
Match: A0A7S1XVS8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XVS8_9STRA)

HSP 1 Score: 147 bits (371), Expect = 8.140e-38
Identity = 89/153 (58.17%), Postives = 115/153 (75.16%), Query Frame = 1
Query:  262 ALEADPSVFDYDRVYDGMKESRDSNAAAATVAREKEKRQPKYIGNLLKQAKMRAVESDRIFDRKLQKEREEQDKLEG--EATMKFVTSAYKKKLMEQKKWELQQQLEEERETRNDVTKTGMSGFYSNLITKNIAMGGDVEKSANSAFTAGSKR 714
            AL  D SVFDYD VYD M  +RDS  AAA  A E+++R+ KY  NLLKQA+MR ++SDRI++RKL++E  E  ++ G  +   KFV +AY+K+L E++ WE  ++ E ERE RNDVTKTGM GFYSNL+TKNIAMGGDV K+A S+FT GSK+
Sbjct:    4 ALTEDASVFDYDGVYDSMTSARDS--AAAAQASERKERKSKYTENLLKQAQMRKLQSDRIYERKLRREAAEVAEMHGGVKDEDKFVGAAYRKQLEEREAWEKAEREEAEREARNDVTKTGMMGFYSNLLTKNIAMGGDV-KNAQSSFTVGSKQ 153          
BLAST of mRNA_H-canaliculatus_F_contig1494.3719.1 vs. uniprot
Match: W7TFP5_9STRA (DUF2040 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TFP5_9STRA)

HSP 1 Score: 137 bits (344), Expect = 1.090e-32
Identity = 97/241 (40.25%), Postives = 137/241 (56.85%), Query Frame = 1
Query:   19 KFGLIGTASSLKKGASGGKARPIGSKPAPRRRPPGATSVFDANSDDEDGPTGDVGGVAAVNKRLAAISAKQEKQAKKEYEDALEADPSVFDYDRVYDGMKESRDSNAAAATVAREKEKRQPKYIGNLLKQAKMRAVESDRIFDRKLQKEREEQDKLEGEATMKFVTSAYKKKLMEQKKWELQQQLEEERETRNDVTK---------TGMSGFYSNLITKNIAMGGDVEKSANSAFTAGSKR 714
            K+GL+      KK   G + RP  +  APRR    A S+ D +SDD       +   A+ NK L A S K +K  ++    A  +DPS++DYD VYD +   R+     A  A ++EK+  +YI NL + A+++  E DR ++R+L KER+E+D L  +  + FVTSAYKKKLME +KWE   +LEE                   +GM  F+SNL+TKNIAMG DV+ +A SA+T GSK+
Sbjct:   10 KYGLVVP---QKKAVPGMRGRPRPASAAPRRPAGSAFSLDDDDSDDNGQEEDGLASKASFNKMLQAQSIKAQKSLEEAEAAARASDPSIYDYDAVYDEIHAKREERDNMAAEAAKEEKKTSRYITNLKRAAELKKQEQDRFYERRLAKERKEEDALYKDKDV-FVTSAYKKKLMETQKWETIDRLEEXXXXXXXXXXXXKGAPGGGSGMDAFFSNLLTKNIAMGADVKVAARSAYTVGSKQ 246          
BLAST of mRNA_H-canaliculatus_F_contig1494.3719.1 vs. uniprot
Match: A0A7R9YG81_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YG81_9STRA)

HSP 1 Score: 134 bits (336), Expect = 8.760e-32
Identity = 86/199 (43.22%), Postives = 128/199 (64.32%), Query Frame = 1
Query:  121 GATSVFDANSDDEDGPTGDVGGVAAVNKRLAAISAKQEKQAKKEYEDALEADPSVFDYDRVYDGMKESRDSNAAAATVAREKEKRQPKYIGNLLKQAKMRAVESDRIFDRKLQKEREEQDKLEGE--ATMKFVTSAYKKKLMEQKKWELQQQLEEERETRNDVTKTGMSGFYSNLITKNIAMGGDVEKSANSAFTAGSK 711
            G +S F +  +D + P  D+  V +   R A  S + +++  ++ + ALE D +VF+YD VYD    SR   A  A VA +K KR+ KY   LL+QAK+R + +DR+++RKL +E+ E+ KL G+  A  +FV +AY+K+L E++++E   + E E E   DVTK GM+GFY NL+TKNIA GGD+E  A S+FT GS+
Sbjct:   33 GVSSAFASTVEDVETPQADLSAVNSALARGAYTSKRAQRETLEQQKAALEQDATVFEYDGVYDDFVNSR--AAKEAQVAEDKRKRKSKYTEALLQQAKLRKLANDRVYERKLLREQAEEAKLNGDVKAEDRFVGAAYRKQLEERERYEAALKAEAEAEAAADVTKKGMTGFYQNLLTKNIAFGGDIEN-ATSSFTVGSR 228          
BLAST of mRNA_H-canaliculatus_F_contig1494.3719.1 vs. uniprot
Match: A0A7S3HBP6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HBP6_9STRA)

HSP 1 Score: 133 bits (335), Expect = 1.240e-31
Identity = 84/195 (43.08%), Postives = 118/195 (60.51%), Query Frame = 1
Query:  130 SVFDANSDDEDGPTGDVGGVAAVNKRLAAISAKQEKQAKKEYEDALEADPSVFDYDRVYDGMKESRDSNAAAATVAREKEKRQPKYIGNLLKQAKMRAVESDRIFDRKLQKEREEQDKLEGEATMKFVTSAYKKKLMEQKKWELQQQLEEERETRNDVTKTGMSGFYSNLITKNIAMGGDVEKSANSAFTAGSKR 714
            S+FD +  DED        V+ VN +LA  +A  E+        A  A+P ++DYD  YD  K    +    +     K+  + +Y+ NLL  +KMR  E +R+F++ L KER+ +D   G+   KFVT+AYKKKL+E KKWE + +L +E E R DV K+GM GFY+NL+TKN+AMGGDV+  A S +TAGS R
Sbjct:   31 SMFDRDDSDEDSSAVS-NDVSRVNAQLARRNAILEQTMSA----AASAEPDIYDYDGAYDSFKAKEQAKHQLSQPIATKDAPKARYVNNLLATSKMREKEKERVFEKNLLKERKVEDAEFGDKD-KFVTAAYKKKLLEDKKWEYEDRLADEVEQRTDVRKSGMEGFYANLLTKNVAMGGDVDAHAVSVYTAGSAR 219          
BLAST of mRNA_H-canaliculatus_F_contig1494.3719.1 vs. uniprot
Match: A0A1V9ZKX0_9STRA (DUF2040 domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZKX0_9STRA)

HSP 1 Score: 131 bits (329), Expect = 2.200e-31
Identity = 92/195 (47.18%), Postives = 121/195 (62.05%), Query Frame = 1
Query:  238 QAKKEYEDALEADPSVFDYDRVYDGMKESRDSNAAAATVAREKEKRQPKYIGNLLKQAKMRAVESDRIFDRKLQKEREEQDKLEGEATMKFVTSAYKKKLMEQKKWELQQQLEEERETRNDVTKTG---MSGFYSNLITKNIAMGGDVEKSANSAFTAGSKRHAATAEYEMQDGNA-KPAAETPTTASPQDTATS 810
            +A++  ++AL +DP+VFDYD VYD M+  R    AA  V       Q KYI  LL++AK+R +E DRI +R+L KEREE DKL G+ T KF+TS+YK+KLME K+WE +     E E   DVTK G   M+GFY+NL+T NIAMGG +EK A SA+T G     A ++    D  A +P    P  A+P D   S
Sbjct:   59 KAERAVQEALASDPNVFDYDGVYDSMQAERVKQKAAKKVEGVP---QSKYINVLLEKAKIREIEHDRIRERRLLKEREEDDKLHGD-TEKFITSSYKRKLMEAKRWEEEDARLAEIEAAQDVTKRGELGMAGFYANLLTNNIAMGGTIEK-ATSAYTTGKLSEPAPSKRPKLDKEADEPIEGPPQNAAPDDQEPS 248          
BLAST of mRNA_H-canaliculatus_F_contig1494.3719.1 vs. uniprot
Match: T0QM91_SAPDV (DUF2040 domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QM91_SAPDV)

HSP 1 Score: 128 bits (321), Expect = 3.460e-30
Identity = 94/196 (47.96%), Postives = 121/196 (61.73%), Query Frame = 1
Query:  256 EDALEADPSVFDYDRVYDGMKESRDSNAAAATVAREKEKRQPKYIGNLLKQAKMRAVESDRIFDRKLQKEREEQDKLEGEATMKFVTSAYKKKLMEQKKWELQQQLEEERETRNDVTKTG---MSGFYSNLITKNIAMGGDVEKSANSAFTAG-----SKRHAATAEYEMQDGNAKPAAE-TP--TTASPQDTATS 810
            ++AL +DP+ FDYD VYD M+  R    AA  V       Q KYI  LL++AK+R +E DRI +R+L KEREE DK+ G+   KF+TS+YK+KLME K+WE +       E   DVTK G   M+GFY+NL+T NIAMGGDVEK A SA+T G     SKR     +    +  A PA+E TP  T A+P D  +S
Sbjct:   64 QEALASDPNAFDYDGVYDSMQAERVKQKAAKKVQGVP---QSKYINVLLEKAKVREIEHDRIRERRLLKEREEDDKIHGDKE-KFITSSYKRKLMEAKRWEEEDARLAAIEDAQDVTKRGELGMAGFYANLLTNNIAMGGDVEK-ATSAYTTGHISEASKRQKVVDDAPQTNEPAAPASEDTPVDTVATPMDETSS 254          
BLAST of mRNA_H-canaliculatus_F_contig1494.3719.1 vs. uniprot
Match: A0A662Y6L8_9STRA (DUF2040 domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y6L8_9STRA)

HSP 1 Score: 127 bits (319), Expect = 8.270e-30
Identity = 88/187 (47.06%), Postives = 114/187 (60.96%), Query Frame = 1
Query:  208 LAAISAKQEKQAKKEYEDALEADPSVFDYDRVYDGMKESRDSNAAAATVAREKEKRQPKYIGNLLKQAKMRAVESDRIFDRKLQKEREEQDKLEGEATMKFVTSAYKKKLMEQKKWELQQQLEEERETRNDVTKTG---MSGFYSNLITKNIAMGGDVEKSANSAFTAGSKRHAATAEYEMQDGNAK 759
            L A  + Q+ Q ++    AL  DPSVFDYD VYD MK +R S      V RE EK+QPKYIG LL QAK+R VE++RI +R+L  ER+  D L G+   K V+++YK+KL E K+W+ +       E R+DVTK G   M+GFY+NL  KNIAMGG     A SA+TA         + E QDG+ K
Sbjct:   45 LEAARSLQQSQVERTRAQALADDPSVFDYDAVYDDMKSARQSEVTKRAVQREAEKKQPKYIGTLLAQAKIREVENERIRERRLLHERKADDALYGDKE-KLVSASYKRKLQEMKRWDEEDARLANLEDRDDVTKQGEHAMAGFYANL-NKNIAMGGSTAN-ARSAYTA---------KEEPQDGDRK 219          
BLAST of mRNA_H-canaliculatus_F_contig1494.3719.1 vs. uniprot
Match: A0A1W0A4N0_9STRA (DUF2040 domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A4N0_9STRA)

HSP 1 Score: 126 bits (316), Expect = 1.550e-29
Identity = 88/215 (40.93%), Postives = 129/215 (60.00%), Query Frame = 1
Query:  208 LAAISAKQEKQAKKEYEDALEADPSVFDYDRVYDGMKESRDSNAAAATVAREKEKRQPKYIGNLLKQAKMRAVESDRIFDRKLQKEREEQDKLEGEATMKFVTSAYKKKLMEQKKWELQQQLEEERETRNDVTKTG---MSGFYSNLITKNIAMGGDVEKSANSAFTAGSKRHAATAEYEMQDG--------NAKPAAETPTTASPQDTATSGGE 819
            + A+ AK   +A++  ++AL +DP+ FDYD VYD ++  R     A  +       Q KYIG L+++AK+R +E DRI +R+L KEREE DKL G+   KF+TS+YK+KLME K+WE +     + E   DVTK G   M+GFY+NL+T NIAMGG++EK A SA+T G    +A+   ++ +            P+A T    +P+DT  +  E
Sbjct:   50 MQAVVAKS--KAERAVQEALASDPNAFDYDDVYDSIQAQRTKQKEAKKINNAP---QSKYIGVLMEKAKVREIEHDRIRERRLLKEREEDDKLHGDKE-KFITSSYKRKLMEAKRWEEEDARLAKLEEAQDVTKRGQLGMAGFYANLLTNNIAMGGNMEK-ATSAYTTGKIAESASKRQKVDENVXXXXXXIEELPSANTAEPVAPEDTTAAAKE 257          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1494.3719.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2R5_ECTSI6.170e-14271.08DUF2040 domain-containing protein n=2 Tax=Ectocarp... [more]
A0A835YZI8_9STRA1.450e-5653.41Coiled-coil domain-containing protein 55-domain co... [more]
A0A7S1XVS8_9STRA8.140e-3858.17Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
W7TFP5_9STRA1.090e-3240.25DUF2040 domain-containing protein n=2 Tax=Monodops... [more]
A0A7R9YG81_9STRA8.760e-3243.22Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S3HBP6_9STRA1.240e-3143.08Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A1V9ZKX0_9STRA2.200e-3147.18DUF2040 domain-containing protein n=1 Tax=Achlya h... [more]
T0QM91_SAPDV3.460e-3047.96DUF2040 domain-containing protein n=1 Tax=Saproleg... [more]
A0A662Y6L8_9STRA8.270e-3047.06DUF2040 domain-containing protein n=2 Tax=Nothophy... [more]
A0A1W0A4N0_9STRA1.550e-2940.93DUF2040 domain-containing protein n=1 Tax=Thrausto... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1494contigH-canaliculatus_F_contig1494:8006..10390 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score430.6
Seed ortholog evalue8.5e-118
Seed eggNOG ortholog2880.D7G2R5
Preferred nameNSRP1
KEGG koko:K07752,ko:K11414,ko:K13206,ko:K14437,ko:K20526
GOsGO:0000375,GO:0000377,GO:0000381,GO:0000398,GO:0002119,GO:0002164,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006928,GO:0007275,GO:0008150,GO:0008152,GO:0008380,GO:0009791,GO:0009987,GO:0010467,GO:0010468,GO:0016070,GO:0016071,GO:0016477,GO:0016604,GO:0016607,GO:0019219,GO:0019222,GO:0031323,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0034641,GO:0040011,GO:0040039,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043484,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045292,GO:0046483,GO:0048024,GO:0048856,GO:0048870,GO:0050684,GO:0050789,GO:0050794,GO:0051171,GO:0051179,GO:0051252,GO:0051674,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1903311,GO:1990904
EggNOG free text desc.mRNA binding
EggNOG OGsKOG2117@1,KOG2117@2759
Ec32 ortholog descriptionDomain of unknown function DUF2040
Ec32 orthologEc-11_003220.1
EC3.4.17.22,3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko03036,ko03041,ko04131
Hectar predicted targeting categoryother localisation
Exons4
Model size1308
Cds size1308
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1494.3719.1prot_H-canaliculatus_F_contig1494.3719.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1494 8006..10390 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929236.0454073-CDS-H-canaliculatus_F_contig1494:8005..83281622929236.0454073-CDS-H-canaliculatus_F_contig1494:8005..8328Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1494 8006..8328 +
1696845729.294621-CDS-H-canaliculatus_F_contig1494:8005..83281696845729.294621-CDS-H-canaliculatus_F_contig1494:8005..8328Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1494 8006..8328 +
1622929236.0570052-CDS-H-canaliculatus_F_contig1494:8618..87781622929236.0570052-CDS-H-canaliculatus_F_contig1494:8618..8778Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1494 8619..8778 +
1696845729.3120716-CDS-H-canaliculatus_F_contig1494:8618..87781696845729.3120716-CDS-H-canaliculatus_F_contig1494:8618..8778Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1494 8619..8778 +
1622929236.0931487-CDS-H-canaliculatus_F_contig1494:9167..93071622929236.0931487-CDS-H-canaliculatus_F_contig1494:9167..9307Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1494 9168..9307 +
1696845729.3266985-CDS-H-canaliculatus_F_contig1494:9167..93071696845729.3266985-CDS-H-canaliculatus_F_contig1494:9167..9307Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1494 9168..9307 +
1622929236.1055796-CDS-H-canaliculatus_F_contig1494:9705..103901622929236.1055796-CDS-H-canaliculatus_F_contig1494:9705..10390Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1494 9706..10390 +
1696845729.336903-CDS-H-canaliculatus_F_contig1494:9705..103901696845729.336903-CDS-H-canaliculatus_F_contig1494:9705..10390Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1494 9706..10390 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1494.3719.1

>prot_H-canaliculatus_F_contig1494.3719.1 ID=prot_H-canaliculatus_F_contig1494.3719.1|Name=mRNA_H-canaliculatus_F_contig1494.3719.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=436bp
MKKSSVKFGLIGTASSLKKGASGGKARPIGSKPAPRRRPPGATSVFDANS
DDEDGPTGDVGGVAAVNKRLAAISAKQEKQAKKEYEDALEADPSVFDYDR
VYDGMKESRDSNAAAATVAREKEKRQPKYIGNLLKQAKMRAVESDRIFDR
KLQKEREEQDKLEGEATMKFVTSAYKKKLMEQKKWELQQQLEEERETRND
VTKTGMSGFYSNLITKNIAMGGDVEKSANSAFTAGSKRHAATAEYEMQDG
NAKPAAETPTTASPQDTATSGGEGGTGGRAAAAGETENADGQAESAGPSA
RMVDPRAASSKKSRDGAEGRDGENVYRESDSSRVRRREDGDAEEDPAKRA
RMEEGSRRGETAGDSPPGIGVTDSGGGGGGGETQEQEREDDERTAEEKSA
AEAEEKARKAAAAKEKKEAAVKAARERFLARKKNP*
back to top

mRNA from alignment at H-canaliculatus_F_contig1494:8006..10390+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1494.3719.1 ID=mRNA_H-canaliculatus_F_contig1494.3719.1|Name=mRNA_H-canaliculatus_F_contig1494.3719.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2385bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1494:8006..10390+ (Hapterophycus canaliculatus Oshoro5f female)
ATGAAGAAATCAAGCGTCAAGTTTGGCCTCATAGGGACAGCTTCATCCCT GAAAAAGGGTGCATCAGGAGGGAAGGCACGGCCGATTGGGTCCAAGCCCG CGCCGCGCCGACGTCCGCCTGGAGCAACGTCGGTGTTCGACGCCAACTCG GATGATGAGGATGGACCAACGGGAGATGTAGGCGGGGTGGCCGCCGTAAA CAAGCGCCTGGCGGCGATTTCGGCCAAGCAAGAGAAGCAGGCGAAAAAGG AGTACGAAGATGCTCTCGAAGCGGATCCCTCTGTCTTCGACTACGACCGC GTCTACGACGGGATGAAGGAGAGGTAAGAGAGTGCGCGCATCGCTTTGTG GACAACCAGGCTGTTCATTATTCTGCAGCAGTGCCTCGGGTTTCCGAGGT TCGTGCTCTGGTTTCGGATAAATTGAGTCTATGGTTTCTGGAGTTTGATT TTGAGATGGCCGGGTCGAGCAGGTCGTTTTGCGGCCAACGAGTTCACGGC ACGAGCACGTTTGCGTTTTTCATCAACCAAGCAACAATGAAATCAGCGCT TGTTTCCCATTCCCCGCTTCCCATTCGCCCTTTCCCATCTCCATCTCTTC CTCCGCTCCGCAGCCGCGACTCGAATGCAGCGGCCGCAACGGTTGCGCGG GAAAAGGAGAAGAGACAGCCCAAGTATATTGGTAACCTTCTCAAGCAAGC CAAGATGCGGGCTGTGGAGTCGGACCGCATCTTCGACAGGAAGCTGCAGA AGGAGCGAGAGGAGCAGGACAAGGTGTGCGTGGAAGCAAAATAGGCAGGA GCATGGGCATCAAGTATCATGCTTTGTGTGGGGTTCTCCTTAACAAGTTG GCATGTATCGTGACTGCAAAACGTCCGCGGTTTAGTTCCAAACGGTGATG GGATGCTATTCAAGGGACTTAACATGGACCCTCCACTTTTCTTGAGGTCC AAAGCTAACGAAAACGACAGCCAAACCATGGTCGAACTACCTGACAGAGC ATCAGCCAAGATGCTGGAATGTTCGGTGCCGTCGTCTCTTATTCCCGGGT TCTGTCCAGCAGCACCAGGGAGTCGTACGTAGCGCGAGAGGCCGTTTGTT CCCAGCCTCCCGCACACGTGCCTCACGCTCTTCGTTGGATGATGCCACTG TCCTCGCCACAGCTGGAAGGCGAGGCGACGATGAAGTTCGTCACCTCGGC CTACAAGAAGAAACTCATGGAGCAGAAAAAGTGGGAGCTGCAGCAGCAGC TGGAGGAGGAGAGGGAGACGCGGAACGACGTGACGAAGACGGGCATGAGC GGGTACAGTACACAGCACGCGCCGTTTGCTTCACAAAGTATGCAGCGCCG TTTATCGCTTTGCGCAGAAGCGCCTCGTCGTCACAGATTTATTTGTTGGC CCGAGGCCTTGTTGTGTCAACGATCCAGGCGTGGGCTTTGGAACTGGAGC TTCGGGAGAGGGCTTTGAAATGGTACAGCCAAACCACCCGAATCGTTTCG GTGCCTCGCTTGAGAAAGCGGGAAGCTTCTCGGAAAGGCCGTACTCAAAG TCTCGCCGTCATAATTTTTGAAACTACAACGAAGCTAGTCCCGCTGCCGA CCCGCGAAATTTTCTCACGGGCCTCTGAATATTAATATTCCTTCCCGCCA TCTCTCACCCCCGGTGTGTCGGCATCGTATCTCTCGCTGCCTGACCGCAG GTTTTACTCGAACCTCATCACCAAGAACATCGCCATGGGCGGCGACGTCG AAAAGTCGGCGAACAGCGCCTTCACCGCCGGCTCCAAGCGGCACGCGGCC ACGGCCGAGTACGAAATGCAGGACGGCAACGCCAAGCCAGCCGCCGAGAC CCCGACGACTGCAAGCCCACAAGACACAGCTACCAGCGGCGGGGAGGGTG GTACGGGTGGTCGTGCGGCAGCGGCTGGAGAGACGGAGAACGCGGATGGA CAAGCGGAAAGTGCTGGCCCAAGCGCAAGAATGGTTGACCCTCGCGCCGC AAGCTCGAAGAAAAGCAGAGACGGAGCGGAAGGGCGTGACGGGGAAAATG TGTACAGAGAATCGGACTCCTCGAGAGTCCGTCGGCGAGAGGACGGGGAC GCGGAGGAGGATCCCGCTAAGCGGGCTCGTATGGAAGAGGGTTCGAGAAG GGGGGAGACGGCGGGTGATTCGCCACCGGGGATTGGGGTTACCGATAGCG GTGGTGGTGGTGGTGGTGGCGAGACGCAGGAGCAGGAGCGGGAGGATGAT GAGAGAACAGCCGAGGAGAAGAGCGCGGCCGAGGCGGAGGAGAAGGCCCG CAAGGCCGCGGCGGCGAAGGAAAAGAAGGAGGCGGCCGTCAAGGCGGCTC GCGAGCGCTTCCTCGCAAGAAAAAAAAATCCATAG
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1494:8006..10390+

>mRNA_H-canaliculatus_F_contig1494.3719.1 ID=mRNA_H-canaliculatus_F_contig1494.3719.1|Name=mRNA_H-canaliculatus_F_contig1494.3719.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2616bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1494:8006..10390+ (Hapterophycus canaliculatus Oshoro5f female)
ATGAAGAAATCAAGCGTCAAGTTTGGCCTCATAGGGACAGCTTCATCCCT
GAAAAAGGGTGCATCAGGAGGGAAGGCACGGCCGATTGGGTCCAAGCCCG
CGCCGCGCCGACGTCCGCCTGGAGCAACGTCGGTGTTCGACGCCAACTCG
GATGATGAGGATGGACCAACGGGAGATGTAGGCGGGGTGGCCGCCGTAAA
CAAGCGCCTGGCGGCGATTTCGGCCAAGCAAGAGAAGCAGGCGAAAAAGG
AGTACGAAGATGCTCTCGAAGCGGATCCCTCTGTCTTCGACTACGACCGC
GTCTACGACGGGATGAAGGAGAGATGAAGAAATCAAGCGTCAAGTTTGGC
CTCATAGGGACAGCTTCATCCCTGAAAAAGGGTGCATCAGGAGGGAAGGC
ACGGCCGATTGGGTCCAAGCCCGCGCCGCGCCGACGTCCGCCTGGAGCAA
CGTCGGTGTTCGACGCCAACTCGGATGATGAGGATGGACCAACGGGAGAT
GTAGGCGGGGTGGCCGCCGTAAACAAGCGCCTGGCGGCGATTTCGGCCAA
GCAAGAGAAGCAGGCGAAAAAGGAGTACGAAGATGCTCTCGAAGCGGATC
CCTCTGTCTTCGACTACGACCGCGTCTACGACGGGATGAAGGAGAGCCGC
GACTCGAATGCAGCGGCCGCAACGGTTGCGCGGGAAAAGGAGAAGAGACA
GCCCAAGTATATTGGTAACCTTCTCAAGCAAGCCAAGATGCGGGCTGTGG
AGTCGGACCGCATCTTCGACAGGAAGCTGCAGAAGGAGCGAGAGGAGCAG
GACAAGCCGCGACTCGAATGCAGCGGCCGCAACGGTTGCGCGGGAAAAGG
AGAAGAGACAGCCCAAGTATATTGGTAACCTTCTCAAGCAAGCCAAGATG
CGGGCTGTGGAGTCGGACCGCATCTTCGACAGGAAGCTGCAGAAGGAGCG
AGAGGAGCAGGACAAGCTGGAAGGCGAGGCGACGATGAAGTTCGTCACCT
CGGCCTACAAGAAGAAACTCATGGAGCAGAAAAAGTGGGAGCTGCAGCAG
CAGCTGGAGGAGGAGAGGGAGACGCGGAACGACGTGACGAAGACGGGCAT
GAGCGGCTGGAAGGCGAGGCGACGATGAAGTTCGTCACCTCGGCCTACAA
GAAGAAACTCATGGAGCAGAAAAAGTGGGAGCTGCAGCAGCAGCTGGAGG
AGGAGAGGGAGACGCGGAACGACGTGACGAAGACGGGCATGAGCGGGTTT
TACTCGAACCTCATCACCAAGAACATCGCCATGGGCGGCGACGTCGAAAA
GTCGGCGAACAGCGCCTTCACCGCCGGCTCCAAGCGGCACGCGGCCACGG
CCGAGTACGAAATGCAGGACGGCAACGCCAAGCCAGCCGCCGAGACCCCG
ACGACTGCAAGCCCACAAGACACAGCTACCAGCGGCGGGGAGGGTGGTAC
GGGTGGTCGTGCGGCAGCGGCTGGAGAGACGGAGAACGCGGATGGACAAG
CGGAAAGTGCTGGCCCAAGCGCAAGAATGGTTGACCCTCGCGCCGCAAGC
TCGAAGAAAAGCAGAGACGGAGCGGAAGGGCGTGACGGGGAAAATGTGTA
CAGAGAATCGGACTCCTCGAGAGTCCGTCGGCGAGAGGACGGGGACGCGG
AGGAGGATCCCGCTAAGCGGGCTCGTATGGAAGAGGGTTCGAGAAGGGGG
GAGACGGCGGGTGATTCGCCACCGGGGATTGGGGTTACCGATAGCGGTGG
TGGTGGTGGTGGTGGCGAGACGCAGGAGCAGGAGCGGGAGGATGATGAGA
GAACAGCCGAGGAGAAGAGCGCGGCCGAGGCGGAGGAGAAGGCCCGCAAG
GCCGCGGCGGCGAAGGAAAAGAAGGAGGCGGCCGTCAAGGCGGCTCGCGA
GCGCTTCCTCGCAAGAAAAAAAAATCCATAGGTTTTACTCGAACCTCATC
ACCAAGAACATCGCCATGGGCGGCGACGTCGAAAAGTCGGCGAACAGCGC
CTTCACCGCCGGCTCCAAGCGGCACGCGGCCACGGCCGAGTACGAAATGC
AGGACGGCAACGCCAAGCCAGCCGCCGAGACCCCGACGACTGCAAGCCCA
CAAGACACAGCTACCAGCGGCGGGGAGGGTGGTACGGGTGGTCGTGCGGC
AGCGGCTGGAGAGACGGAGAACGCGGATGGACAAGCGGAAAGTGCTGGCC
CAAGCGCAAGAATGGTTGACCCTCGCGCCGCAAGCTCGAAGAAAAGCAGA
GACGGAGCGGAAGGGCGTGACGGGGAAAATGTGTACAGAGAATCGGACTC
CTCGAGAGTCCGTCGGCGAGAGGACGGGGACGCGGAGGAGGATCCCGCTA
AGCGGGCTCGTATGGAAGAGGGTTCGAGAAGGGGGGAGACGGCGGGTGAT
TCGCCACCGGGGATTGGGGTTACCGATAGCGGTGGTGGTGGTGGTGGTGG
CGAGACGCAGGAGCAGGAGCGGGAGGATGATGAGAGAACAGCCGAGGAGA
AGAGCGCGGCCGAGGCGGAGGAGAAGGCCCGCAAGGCCGCGGCGGCGAAG
GAAAAGAAGGAGGCGGCCGTCAAGGCGGCTCGCGAGCGCTTCCTCGCAAG
AAAAAAAAATCCATAG
back to top