mRNA_H-canaliculatus_F_contig14901.3703.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14901.3703.1
Unique NamemRNA_H-canaliculatus_F_contig14901.3703.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14901.3703.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14901contigH-canaliculatus_F_contig14901:1288..2262 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size975
Cds size756
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929233.416945-CDS-H-canaliculatus_F_contig14901:1287..20431622929233.416945-CDS-H-canaliculatus_F_contig14901:1287..2043Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14901 1288..2043 +
1696845728.4808712-CDS-H-canaliculatus_F_contig14901:1287..20431696845728.4808712-CDS-H-canaliculatus_F_contig14901:1287..2043Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14901 1288..2043 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929233.4305813-UTR-H-canaliculatus_F_contig14901:2043..22621622929233.4305813-UTR-H-canaliculatus_F_contig14901:2043..2262Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14901 2044..2262 +
1696845728.492282-UTR-H-canaliculatus_F_contig14901:2043..22621696845728.492282-UTR-H-canaliculatus_F_contig14901:2043..2262Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14901 2044..2262 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14901.3703.1prot_H-canaliculatus_F_contig14901.3703.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14901 1288..2043 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14901.3703.1

>prot_H-canaliculatus_F_contig14901.3703.1 ID=prot_H-canaliculatus_F_contig14901.3703.1|Name=mRNA_H-canaliculatus_F_contig14901.3703.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=252bp
KDAESSPCSHEKTSGGGRARTESAATGAATAAVGSGATPTVAAPAVLDSA
AAPLAAAAVIVGSEAAPPGSEAAASGTDKGGKSDGEEVASAGRAKRRAGS
QSRAPAGGGRARALKVSTKDDQERDRDQEEEEGDDNEGEEEERAGRDDGE
ESGGGKKRQTPARARVKRKVRPEDRRSSPRNADKALAAAGAAAAGGSGGG
AGRKRKPASPSSAGGNKRQSVGGVNGNDQGRRQSSRAASAVATAALSGGR
S*
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mRNA from alignment at H-canaliculatus_F_contig14901:1288..2262+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14901.3703.1 ID=mRNA_H-canaliculatus_F_contig14901.3703.1|Name=mRNA_H-canaliculatus_F_contig14901.3703.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=975bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14901:1288..2262+ (Hapterophycus canaliculatus Oshoro5f female)
AAGGATGCGGAAAGCTCTCCCTGTTCCCACGAAAAAACGAGCGGGGGAGG
AAGGGCGCGCACGGAATCAGCGGCAACAGGAGCGGCTACCGCCGCGGTCG
GATCGGGGGCGACGCCGACAGTGGCAGCACCCGCGGTGCTCGATTCTGCT
GCAGCACCGCTTGCAGCAGCAGCCGTGATCGTCGGATCGGAAGCGGCGCC
ACCTGGATCGGAAGCGGCGGCCTCCGGGACGGACAAAGGAGGAAAGAGCG
ACGGGGAGGAGGTGGCGTCGGCCGGCCGGGCCAAACGCAGGGCGGGGAGC
CAGAGCAGGGCGCCGGCTGGGGGCGGTAGAGCCAGAGCCCTGAAGGTCAG
CACCAAGGACGACCAGGAGCGAGACCGGGACCAGGAAGAGGAGGAGGGCG
ACGATAACGAGGGGGAGGAGGAGGAGAGGGCGGGGCGAGACGACGGGGAG
GAGTCAGGGGGAGGGAAGAAACGACAGACCCCGGCGAGGGCAAGGGTGAA
GAGAAAGGTGAGGCCCGAGGACCGCCGCTCCTCTCCTCGTAACGCGGACA
AGGCCCTGGCCGCCGCTGGGGCAGCGGCGGCAGGAGGCAGCGGCGGCGGC
GCCGGGAGGAAGAGGAAACCGGCGTCCCCGTCGTCCGCCGGCGGCAACAA
GAGGCAATCGGTCGGTGGGGTCAACGGGAACGACCAGGGCCGTCGCCAGT
CCAGCCGGGCGGCGTCTGCGGTGGCGACGGCGGCCTTGAGCGGTGGCAGG
AGTTGAAGGGGCCGAAGGCGTCGCCGTGGAGGTTGTTTTCTGTCTCTTGT
GTCCGGAGCGAAAGTATGGGATAGCGATGGTGTCTCGTTTTGTCTACAAG
GCGTGTGATGTTAGGAGTGAGATTGCGTCCTTGGGGTGCGACAGGTGCAC
ATGTCGCGATTTTTCACGCGCGTCCGGAACCAACCTCCGTGTCAGTGTTC
GCATCGGGTGACGGTGCTTGCGAGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14901:1288..2262+

>mRNA_H-canaliculatus_F_contig14901.3703.1 ID=mRNA_H-canaliculatus_F_contig14901.3703.1|Name=mRNA_H-canaliculatus_F_contig14901.3703.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1512bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14901:1288..2262+ (Hapterophycus canaliculatus Oshoro5f female)
AAGGATGCGGAAAGCTCTCCCTGTTCCCACGAAAAAACGAGCGGGGGAGG
AAGGGCGCGCACGGAATCAGCGGCAACAGGAGCGGCTACCGCCGCGGTCG
GATCGGGGGCGACGCCGACAGTGGCAGCACCCGCGGTGCTCGATTCTGCT
GCAGCACCGCTTGCAGCAGCAGCCGTGATCGTCGGATCGGAAGCGGCGCC
ACCTGGATCGGAAGCGGCGGCCTCCGGGACGGACAAAGGAGGAAAGAGCG
ACGGGGAGGAGGTGGCGTCGGCCGGCCGGGCCAAACGCAGGGCGGGGAGC
CAGAGCAGGGCGCCGGCTGGGGGCGGTAGAGCCAGAGCCCTGAAGGTCAG
CACCAAGGACGACCAGGAGCGAGACCGGGACCAGGAAGAGGAGGAGGGCG
ACGATAACGAGGGGGAGGAGGAGGAGAGGGCGGGGCGAGACGACGGGGAG
GAGTCAGGGGGAGGGAAGAAACGACAGACCCCGGCGAGGGCAAGGGTGAA
GAGAAAGGTGAGGCCCGAGGACCGCCGCTCCTCTCCTCGTAACGCGGACA
AGGCCCTGGCCGCCGCTGGGGCAGCGGCGGCAGGAGGCAGCGGCGGCGGC
GCCGGGAGGAAGAGGAAACCGGCGTCCCCGTCGTCCGCCGGCGGCAACAA
GAGGCAATCGGTCGGTGGGGTCAACGGGAACGACCAGGGCCGTCGCCAGT
CCAGCCGGGCGGCGTCTGCGGTGGCGACGGCGGCCTTGAGCGGTGGCAGG
AGTTGAAAGGATGCGGAAAGCTCTCCCTGTTCCCACGAAAAAACGAGCGG
GGGAGGAAGGGCGCGCACGGAATCAGCGGCAACAGGAGCGGCTACCGCCG
CGGTCGGATCGGGGGCGACGCCGACAGTGGCAGCACCCGCGGTGCTCGAT
TCTGCTGCAGCACCGCTTGCAGCAGCAGCCGTGATCGTCGGATCGGAAGC
GGCGCCACCTGGATCGGAAGCGGCGGCCTCCGGGACGGACAAAGGAGGAA
AGAGCGACGGGGAGGAGGTGGCGTCGGCCGGCCGGGCCAAACGCAGGGCG
GGGAGCCAGAGCAGGGCGCCGGCTGGGGGCGGTAGAGCCAGAGCCCTGAA
GGTCAGCACCAAGGACGACCAGGAGCGAGACCGGGACCAGGAAGAGGAGG
AGGGCGACGATAACGAGGGGGAGGAGGAGGAGAGGGCGGGGCGAGACGAC
GGGGAGGAGTCAGGGGGAGGGAAGAAACGACAGACCCCGGCGAGGGCAAG
GGTGAAGAGAAAGGTGAGGCCCGAGGACCGCCGCTCCTCTCCTCGTAACG
CGGACAAGGCCCTGGCCGCCGCTGGGGCAGCGGCGGCAGGAGGCAGCGGC
GGCGGCGCCGGGAGGAAGAGGAAACCGGCGTCCCCGTCGTCCGCCGGCGG
CAACAAGAGGCAATCGGTCGGTGGGGTCAACGGGAACGACCAGGGCCGTC
GCCAGTCCAGCCGGGCGGCGTCTGCGGTGGCGACGGCGGCCTTGAGCGGT
GGCAGGAGTTGA
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