mRNA_H-canaliculatus_F_contig14898.3693.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig14898.3693.1 vs. uniprot
Match: D8LRW3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRW3_ECTSI) HSP 1 Score: 216 bits (551), Expect = 9.470e-63 Identity = 108/128 (84.38%), Postives = 117/128 (91.41%), Query Frame = 1
Query: 1 VTVAIKQMRTQRRIALTGSPLQNNLIEYFTMVDFARKGMLGTLERFKNYFEAPILNGMLSDSSKADAKRSHGRSHVLHQTLSGFVQRKDVTVMAKALPKDVVKEEIVLTVTLSDSQKALTRKLFREAR 384
VT AIK++RT+RR+ALTGSPLQNNL+EY+TMVDF RKGMLGTLERFKNYFEAPI+NGML DSS D KRSHGRSHVLHQTL GFVQRKDVTVMAKALPKDVVKEEIVL V LSD Q+ LTRK+FREAR
Sbjct: 1983 VTQAIKKIRTRRRVALTGSPLQNNLVEYYTMVDFVRKGMLGTLERFKNYFEAPIVNGMLVDSSPYDVKRSHGRSHVLHQTLMGFVQRKDVTVMAKALPKDVVKEEIVLNVNLSDEQQRLTRKIFREAR 2110
BLAST of mRNA_H-canaliculatus_F_contig14898.3693.1 vs. uniprot
Match: A0A6H5KF11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF11_9PHAE) HSP 1 Score: 214 bits (544), Expect = 8.320e-62 Identity = 106/128 (82.81%), Postives = 117/128 (91.41%), Query Frame = 1
Query: 1 VTVAIKQMRTQRRIALTGSPLQNNLIEYFTMVDFARKGMLGTLERFKNYFEAPILNGMLSDSSKADAKRSHGRSHVLHQTLSGFVQRKDVTVMAKALPKDVVKEEIVLTVTLSDSQKALTRKLFREAR 384
VT AIK++RT+RR+ALTGSPLQNNL+EY+TMVDF R+GMLGTLERFKNYFEAPI+NGML DSS D KRSHGRSHVLHQTL GFVQRKD+TVMAKALPKDVVKEEIVL V LSD Q+ LTRK+FREAR
Sbjct: 1863 VTQAIKKIRTRRRVALTGSPLQNNLVEYYTMVDFVRQGMLGTLERFKNYFEAPIVNGMLVDSSPYDVKRSHGRSHVLHQTLMGFVQRKDLTVMAKALPKDVVKEEIVLNVNLSDEQQKLTRKIFREAR 1990
BLAST of mRNA_H-canaliculatus_F_contig14898.3693.1 vs. uniprot
Match: A0A7S0QYE4_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0QYE4_9CHLO) HSP 1 Score: 127 bits (319), Expect = 1.870e-34 Identity = 66/128 (51.56%), Postives = 87/128 (67.97%), Query Frame = 1
Query: 1 VTVAIKQMRTQRRIALTGSPLQNNLIEYFTMVDFARKGMLGTLERFKNYFEAPILNGMLSDSSKADAKRSHGRSHVLHQTLSGFVQRKDVTVMAKALPKDVVKEEIVLTVTLSDSQKALTRKLFREAR 384
+T A++ RT RR+ALTGSPLQNNL+EY+TMVDF R+G LG+ F+N FEAPI NG DS++ D R+HVLH +LSGFVQR+ V V+ + LP K E V+TV LS Q+ L + ++ R
Sbjct: 36 ITSALQGARTARRVALTGSPLQNNLMEYYTMVDFVRQGFLGSTADFRNRFEAPIKNGQHVDSNETDVSMMKHRAHVLHSSLSGFVQRQGVAVLCRQLPP---KYETVITVRLSKLQRTLYEQYLKQFR 160
BLAST of mRNA_H-canaliculatus_F_contig14898.3693.1 vs. uniprot
Match: UPI0009E37A8B (protein CHROMATIN REMODELING 20 isoform X2 n=1 Tax=Phalaenopsis equestris TaxID=78828 RepID=UPI0009E37A8B) HSP 1 Score: 127 bits (318), Expect = 2.230e-31 Identity = 65/124 (52.42%), Postives = 87/124 (70.16%), Query Frame = 1
Query: 1 VTVAIKQMRTQRRIALTGSPLQNNLIEYFTMVDFARKGMLGTLERFKNYFEAPILNGMLSDSSKADAKRSHGRSHVLHQTLSGFVQRKDVTVMAKALPKDVVKEEIVLTVTLSDSQKALTRKLF 372
+T+A+KQ+RTQRRIALTGSPLQNNL+EY+ MVDF R+G LG+ F+N F+ PI NG ++S+ D K + RSH+L++ L GFVQR D+ V+ K LP V V+TV LS Q+ L R+
Sbjct: 943 ITLALKQVRTQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFQNRFQNPIENGQHTNSTALDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTV---FVITVKLSPLQRKLYRRFL 1063
BLAST of mRNA_H-canaliculatus_F_contig14898.3693.1 vs. uniprot
Match: UPI0009E309BC (protein CHROMATIN REMODELING 20 isoform X1 n=1 Tax=Phalaenopsis equestris TaxID=78828 RepID=UPI0009E309BC) HSP 1 Score: 127 bits (318), Expect = 2.260e-31 Identity = 65/124 (52.42%), Postives = 87/124 (70.16%), Query Frame = 1
Query: 1 VTVAIKQMRTQRRIALTGSPLQNNLIEYFTMVDFARKGMLGTLERFKNYFEAPILNGMLSDSSKADAKRSHGRSHVLHQTLSGFVQRKDVTVMAKALPKDVVKEEIVLTVTLSDSQKALTRKLF 372
+T+A+KQ+RTQRRIALTGSPLQNNL+EY+ MVDF R+G LG+ F+N F+ PI NG ++S+ D K + RSH+L++ L GFVQR D+ V+ K LP V V+TV LS Q+ L R+
Sbjct: 943 ITLALKQVRTQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFQNRFQNPIENGQHTNSTALDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTV---FVITVKLSPLQRKLYRRFL 1063
BLAST of mRNA_H-canaliculatus_F_contig14898.3693.1 vs. uniprot
Match: A0A6P5EKF0_ANACO (ATP-dependent helicase ATRX n=5 Tax=Ananas comosus TaxID=4615 RepID=A0A6P5EKF0_ANACO) HSP 1 Score: 127 bits (318), Expect = 2.260e-31 Identity = 67/123 (54.47%), Postives = 86/123 (69.92%), Query Frame = 1
Query: 4 TVAIKQMRTQRRIALTGSPLQNNLIEYFTMVDFARKGMLGTLERFKNYFEAPILNGMLSDSSKADAKRSHGRSHVLHQTLSGFVQRKDVTVMAKALPKDVVKEEIVLTVTLSDSQKALTRKLF 372
T A+KQ++TQRRIALTGSPLQNNL+EY+ MVDF R+G LGT F+N F+ PI NG ++S+K D K + RSH+L++ L GFVQR D+ V+ K LP V V+TV LS Q+ L RK
Sbjct: 933 TQALKQVKTQRRIALTGSPLQNNLMEYYCMVDFVREGYLGTSYEFRNRFQNPIENGQHANSTKDDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTV---YVITVKLSPLQRKLYRKFL 1052
BLAST of mRNA_H-canaliculatus_F_contig14898.3693.1 vs. uniprot
Match: UPI000C1D663E (protein CHROMATIN REMODELING 20-like n=1 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1D663E) HSP 1 Score: 117 bits (294), Expect = 5.150e-31 Identity = 61/123 (49.59%), Postives = 84/123 (68.29%), Query Frame = 1
Query: 4 TVAIKQMRTQRRIALTGSPLQNNLIEYFTMVDFARKGMLGTLERFKNYFEAPILNGMLSDSSKADAKRSHGRSHVLHQTLSGFVQRKDVTVMAKALPKDVVKEEIVLTVTLSDSQKALTRKLF 372
T A+KQ++ QRRIALTGSPLQNNL+EY+ MVDF R+G LG+ F+N ++ PI NG ++S+ D K + RSHVL++ L GFVQR D++V+ K LP V V+ V LS Q+ L ++
Sbjct: 10 THALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRYQNPIENGQHTNSTAEDVKIMNQRSHVLYEQLKGFVQRMDMSVVKKDLPPKTV---FVIAVKLSHLQRQLYKRFL 129
BLAST of mRNA_H-canaliculatus_F_contig14898.3693.1 vs. uniprot
Match: A0A835UWH7_VANPL (Uncharacterized protein n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835UWH7_VANPL) HSP 1 Score: 125 bits (315), Expect = 5.650e-31 Identity = 64/124 (51.61%), Postives = 87/124 (70.16%), Query Frame = 1
Query: 1 VTVAIKQMRTQRRIALTGSPLQNNLIEYFTMVDFARKGMLGTLERFKNYFEAPILNGMLSDSSKADAKRSHGRSHVLHQTLSGFVQRKDVTVMAKALPKDVVKEEIVLTVTLSDSQKALTRKLF 372
+T+A+KQ++TQRRIALTGSPLQNNL+EY+ MVDF R+G LG+ F+N F+ PI NG ++S+ D K + RSH+L++ L GFVQR D+ V+ K LP V V+TV LS Q+ L R+
Sbjct: 961 ITLALKQVQTQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTAEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPHKTV---FVITVKLSPLQRKLYRRFL 1081
BLAST of mRNA_H-canaliculatus_F_contig14898.3693.1 vs. uniprot
Match: A0A835UUV4_VANPL (ATP-dependent helicase ATRX n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835UUV4_VANPL) HSP 1 Score: 125 bits (315), Expect = 5.740e-31 Identity = 64/124 (51.61%), Postives = 87/124 (70.16%), Query Frame = 1
Query: 1 VTVAIKQMRTQRRIALTGSPLQNNLIEYFTMVDFARKGMLGTLERFKNYFEAPILNGMLSDSSKADAKRSHGRSHVLHQTLSGFVQRKDVTVMAKALPKDVVKEEIVLTVTLSDSQKALTRKLF 372
+T+A+KQ++TQRRIALTGSPLQNNL+EY+ MVDF R+G LG+ F+N F+ PI NG ++S+ D K + RSH+L++ L GFVQR D+ V+ K LP V V+TV LS Q+ L R+
Sbjct: 961 ITLALKQVQTQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTAEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPHKTV---FVITVKLSPLQRKLYRRFL 1081
BLAST of mRNA_H-canaliculatus_F_contig14898.3693.1 vs. uniprot
Match: A0A1D1Z2M2_9ARAE (ATP-dependent helicase ATRX n=2 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1Z2M2_9ARAE) HSP 1 Score: 125 bits (315), Expect = 5.740e-31 Identity = 64/124 (51.61%), Postives = 86/124 (69.35%), Query Frame = 1
Query: 1 VTVAIKQMRTQRRIALTGSPLQNNLIEYFTMVDFARKGMLGTLERFKNYFEAPILNGMLSDSSKADAKRSHGRSHVLHQTLSGFVQRKDVTVMAKALPKDVVKEEIVLTVTLSDSQKALTRKLF 372
+T A+KQ+RTQRRIALTGSPLQNNL+EY+ MVDF R+G LG+ F+N F+ PI NG ++S+ D K + RSH+L++ L GFVQR D+ V+ K LP V V+TV LS Q+ L ++
Sbjct: 957 ITQALKQVRTQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHANSTSVDVKIMNQRSHILYEQLKGFVQRMDLNVVKKDLPPKTV---FVITVKLSPLQRKLYKRFL 1077 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14898.3693.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig14898.3693.1 >prot_H-canaliculatus_F_contig14898.3693.1 ID=prot_H-canaliculatus_F_contig14898.3693.1|Name=mRNA_H-canaliculatus_F_contig14898.3693.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=122bp MRTQRRIALTGSPLQNNLIEYFTMVDFARKGMLGTLERFKNYFEAPILNGback to top mRNA from alignment at H-canaliculatus_F_contig14898:756..1590+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig14898.3693.1 ID=mRNA_H-canaliculatus_F_contig14898.3693.1|Name=mRNA_H-canaliculatus_F_contig14898.3693.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=835bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14898:756..1590+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14898:756..1590+ >mRNA_H-canaliculatus_F_contig14898.3693.1 ID=mRNA_H-canaliculatus_F_contig14898.3693.1|Name=mRNA_H-canaliculatus_F_contig14898.3693.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=732bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14898:756..1590+ (Hapterophycus canaliculatus Oshoro5f female)back to top |