mRNA_H-canaliculatus_F_contig14894.3691.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14894.3691.1
Unique NamemRNA_H-canaliculatus_F_contig14894.3691.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14894.3691.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14894contigH-canaliculatus_F_contig14894:340..1001 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size174
Cds size168
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14894.3691.1prot_H-canaliculatus_F_contig14894.3691.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14894 340..996 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929230.9015927-CDS-H-canaliculatus_F_contig14894:339..4241622929230.9015927-CDS-H-canaliculatus_F_contig14894:339..424Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14894 340..424 +
1696845727.2085545-CDS-H-canaliculatus_F_contig14894:339..4241696845727.2085545-CDS-H-canaliculatus_F_contig14894:339..424Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14894 340..424 +
1622929230.922391-CDS-H-canaliculatus_F_contig14894:913..9961622929230.922391-CDS-H-canaliculatus_F_contig14894:913..996Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14894 914..996 +
1696845727.2174-CDS-H-canaliculatus_F_contig14894:913..9961696845727.2174-CDS-H-canaliculatus_F_contig14894:913..996Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14894 914..996 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929230.9425788-UTR-H-canaliculatus_F_contig14894:996..10011622929230.9425788-UTR-H-canaliculatus_F_contig14894:996..1001Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14894 997..1001 +
1696845727.225882-UTR-H-canaliculatus_F_contig14894:996..10011696845727.225882-UTR-H-canaliculatus_F_contig14894:996..1001Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14894 997..1001 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14894.3691.1

>prot_H-canaliculatus_F_contig14894.3691.1 ID=prot_H-canaliculatus_F_contig14894.3691.1|Name=mRNA_H-canaliculatus_F_contig14894.3691.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=56bp
NRSEDQDQRRSERSQQPGLRRHSGNRQKSVEAAAVAAAAAAATKASGKGV
SKIPA*
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mRNA from alignment at H-canaliculatus_F_contig14894:340..1001+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14894.3691.1 ID=mRNA_H-canaliculatus_F_contig14894.3691.1|Name=mRNA_H-canaliculatus_F_contig14894.3691.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=662bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14894:340..1001+ (Hapterophycus canaliculatus Oshoro5f female)
AACCGATCAGAAGATCAAGACCAGCGACGCAGCGAAAGGTCGCAGCAGCC
CGGACTTCGACGACATTCGGGCAATCGTCAAAAAAGTAAGCATCCGACAG
GAGTAGACACCTGCTCATGCATGATCGGTAACATCAGTGACAGCGGCTTC
AGCACCGGCGCGAATAAAATCGACAGGAATACTATTTGTGTTCTTCGTTG
CACGCACGGTCAAGCATCTAGTGTTGAAGGGACTGTTGATCGACCCGAGA
TAGTAAATATAAGCGCATGGGGATTAGAGCGAACCTTTAAATTTGGGCAG
TAGCGCTCCAGCAATTAAGTGCCTTTCGCCTATCGTCCTCGGTTACAACT
CTCGGTATGGACAACGTTGTCGTTGCTCGTTGCCGTACCTGTAACCGGCC
GTGGTGTGGATGGATGCTGATCCAAACACTGTAATATCTGGAAAACAGGG
AAGTTACAGAAATGTACTCTGCAACATGCCTGCCACAGTCCAGCCAACGT
ATCCAGCTCTGTAATCGCCCCCCCGCCTTCCCGTGTCCTCCGCCTCGATT
ACCGCGGTCTTCCGTGCGCAACAGGTGTTGAGGCGGCAGCTGTAGCCGCA
GCAGCAGCTGCGGCCACCAAAGCGTCTGGCAAGGGTGTCTCGAAGATTCC
CGCTTGAGCCTT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14894:340..1001+

>mRNA_H-canaliculatus_F_contig14894.3691.1 ID=mRNA_H-canaliculatus_F_contig14894.3691.1|Name=mRNA_H-canaliculatus_F_contig14894.3691.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=336bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14894:340..1001+ (Hapterophycus canaliculatus Oshoro5f female)
AACCGATCAGAAGATCAAGACCAGCGACGCAGCGAAAGGTCGCAGCAGCC
CGGACTTCGACGACATTCGGGCAATCGTCAAAAAAAACCGATCAGAAGAT
CAAGACCAGCGACGCAGCGAAAGGTCGCAGCAGCCCGGACTTCGACGACA
TTCGGGCAATCGTCAAAAAAGTGTTGAGGCGGCAGCTGTAGCCGCAGCAG
CAGCTGCGGCCACCAAAGCGTCTGGCAAGGGTGTCTCGAAGATTCCCGCT
TGAGTGTTGAGGCGGCAGCTGTAGCCGCAGCAGCAGCTGCGGCCACCAAA
GCGTCTGGCAAGGGTGTCTCGAAGATTCCCGCTTGA
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