mRNA_H-canaliculatus_F_contig14891.3690.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14891.3690.1
Unique NamemRNA_H-canaliculatus_F_contig14891.3690.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14891.3690.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14891contigH-canaliculatus_F_contig14891:903..2285 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size276
Cds size276
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929230.725315-CDS-H-canaliculatus_F_contig14891:902..10821622929230.725315-CDS-H-canaliculatus_F_contig14891:902..1082Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14891 903..1082 +
1696845727.1617782-CDS-H-canaliculatus_F_contig14891:902..10821696845727.1617782-CDS-H-canaliculatus_F_contig14891:902..1082Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14891 903..1082 +
1622929230.7441857-CDS-H-canaliculatus_F_contig14891:2189..22851622929230.7441857-CDS-H-canaliculatus_F_contig14891:2189..2285Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14891 2190..2285 +
1696845727.1714191-CDS-H-canaliculatus_F_contig14891:2189..22851696845727.1714191-CDS-H-canaliculatus_F_contig14891:2189..2285Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14891 2190..2285 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14891.3690.1prot_H-canaliculatus_F_contig14891.3690.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14891 903..2285 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14891.3690.1

>prot_H-canaliculatus_F_contig14891.3690.1 ID=prot_H-canaliculatus_F_contig14891.3690.1|Name=mRNA_H-canaliculatus_F_contig14891.3690.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=92bp
VEGAQDRGSSLPGVAVGAAGTATAVGSSKEKGKGPRNKRPKAIKSKVKAK
KGRGDDPDPEGYDTWAFKGHRYEELEKMAMYQAVRKLGPEFH
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mRNA from alignment at H-canaliculatus_F_contig14891:903..2285+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14891.3690.1 ID=mRNA_H-canaliculatus_F_contig14891.3690.1|Name=mRNA_H-canaliculatus_F_contig14891.3690.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1383bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14891:903..2285+ (Hapterophycus canaliculatus Oshoro5f female)
GTAGAGGGGGCGCAGGATCGAGGCAGTTCTCTTCCTGGTGTTGCTGTTGG
GGCTGCTGGTACCGCGACGGCGGTGGGGTCCAGTAAAGAGAAAGGGAAGG
GACCACGAAACAAGAGGCCCAAGGCCATCAAGTCCAAGGTCAAGGCCAAG
AAGGGTCGAGGCGACGACCCGGACCCCGAGGCGAGTACATCGGTCGAAGG
TTGAGGGGCATTCGGGGGGGCAGGAGTAGGTCGGGTTTTTGCGAGGGTTC
TTCACACTTAGTGTCGCGCCCTCTAAATTTTGCGTCAGGTTTTGAGTGTT
TTTTTTAATTTGAATTTTGGAGTCCATGTTTTTAAAAATGCTCATACAAT
ACAGCAATGGTCCTTTTCTGTTATTCAGATGAGGTGGGTACCAGGGGGCT
GCTATAGGCACACTGCCGTTGCACGTAAGTCCCGTTCACCCTTGGCATTA
TATGATAAAAAATACACACAGGTTGTTCAGTTATCTGAGGCGCGTTTCAG
TTGTGTCTGCGGCGCCAAAAAGGACCCAGGGGATGTACAGATGCGTAGTA
TTTGCAGCACTGCCTTGGGGAGACACATGTCCCGCACGAGCATGGACCGC
TGAACGTTCGATAACTAAAATTATAGAATTAATGTACTACGAGCGTCGTA
TGCATGAACCAGTGAGCCGGCACACGCACGTGAAAAAAATAAATAAGTCG
TCGTCTACATGATGGGCTGTTAGGAGAGCTCCTAGGTCCGAGGGACTTTG
TGTAGGGCCTGCATTTCGTTCAAGGCGGCCGCAGATATCAATTTTTCATA
GAGTGTACCAGTTGAGGAATTTGTACTTGCGTTGTACCCGGACTAGGCGA
AAGCGTCGAAAATGTTAGACTTCAGGGGCAGGACTACATCCTAGGACGCC
CTTGGAGGCTGGCGTGTGTCGACGGCACGTATGTGCTCACACGAAGCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCC
TTGTCTCTCTCTCTGTCTCTGTTTCTCTGGGGGTCTCTCTCTGTCTCTGT
TTCTCTGGGGGTCTCTCTCTCTATCTCTCTCTCTCTATCTCTCGCTCTCT
CGCTCTCTCCCTCTCCCTCCCTCTCCCTCTTTCTCTCTCTGTCCCTCTGT
CTCTCTCTCTCCCTCCCTCTCTCTCTCTCTCTCTCCTTCTCTGTCTCCCT
CTCTCTCTCTCTCTCTCTCTCTGGCTCTCTCTCTCCATCTCTGTATTTTC
CCGGCGCTCGCCCTTGCGTCCGCCGCCGCCGCGGCAGGGATACGATACTT
GGGCCTTCAAAGGTCACAGGTACGAGGAACTGGAGAAGATGGCGATGTAC
CAAGCCGTCAGGAAGCTAGGACCGGAATTCCAT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14891:903..2285+

>mRNA_H-canaliculatus_F_contig14891.3690.1 ID=mRNA_H-canaliculatus_F_contig14891.3690.1|Name=mRNA_H-canaliculatus_F_contig14891.3690.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=552bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14891:903..2285+ (Hapterophycus canaliculatus Oshoro5f female)
GTAGAGGGGGCGCAGGATCGAGGCAGTTCTCTTCCTGGTGTTGCTGTTGG
GGCTGCTGGTACCGCGACGGCGGTGGGGTCCAGTAAAGAGAAAGGGAAGG
GACCACGAAACAAGAGGCCCAAGGCCATCAAGTCCAAGGTCAAGGCCAAG
AAGGGTCGAGGCGACGACCCGGACCCCGAGGTAGAGGGGGCGCAGGATCG
AGGCAGTTCTCTTCCTGGTGTTGCTGTTGGGGCTGCTGGTACCGCGACGG
CGGTGGGGTCCAGTAAAGAGAAAGGGAAGGGACCACGAAACAAGAGGCCC
AAGGCCATCAAGTCCAAGGTCAAGGCCAAGAAGGGTCGAGGCGACGACCC
GGACCCCGAGGGATACGATACTTGGGCCTTCAAAGGTCACAGGTACGAGG
AACTGGAGAAGATGGCGATGTACCAAGCCGTCAGGAAGCTAGGACCGGAA
TTCCATGGATACGATACTTGGGCCTTCAAAGGTCACAGGTACGAGGAACT
GGAGAAGATGGCGATGTACCAAGCCGTCAGGAAGCTAGGACCGGAATTCC
AT
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