mRNA_H-canaliculatus_F_contig14869.3678.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14869.3678.1
Unique NamemRNA_H-canaliculatus_F_contig14869.3678.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14869.3678.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14869contigH-canaliculatus_F_contig14869:1589..1949 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size174
Cds size171
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929229.0913572-CDS-H-canaliculatus_F_contig14869:1590..16741622929229.0913572-CDS-H-canaliculatus_F_contig14869:1590..1674Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14869 1591..1674 -
1696845726.4274418-CDS-H-canaliculatus_F_contig14869:1590..16741696845726.4274418-CDS-H-canaliculatus_F_contig14869:1590..1674Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14869 1591..1674 -
1622929229.1091144-CDS-H-canaliculatus_F_contig14869:1862..19491622929229.1091144-CDS-H-canaliculatus_F_contig14869:1862..1949Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14869 1863..1949 -
1696845726.444722-CDS-H-canaliculatus_F_contig14869:1862..19491696845726.444722-CDS-H-canaliculatus_F_contig14869:1862..1949Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14869 1863..1949 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14869.3678.1prot_H-canaliculatus_F_contig14869.3678.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14869 1591..1949 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14869.3678.1

>prot_H-canaliculatus_F_contig14869.3678.1 ID=prot_H-canaliculatus_F_contig14869.3678.1|Name=mRNA_H-canaliculatus_F_contig14869.3678.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=57bp
SPAERSVCSQGGKKGRGYAPGKERPRQQERKGPDVRGYQGVTADGSSRCV
EETVFAP
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mRNA from alignment at H-canaliculatus_F_contig14869:1589..1949-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14869.3678.1 ID=mRNA_H-canaliculatus_F_contig14869.3678.1|Name=mRNA_H-canaliculatus_F_contig14869.3678.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=361bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14869:1589..1949- (Hapterophycus canaliculatus Oshoro5f female)
TCGCCAGCTGAACGTAGTGTTTGTAGCCAGGGTGGCAAAAAAGGACGTGG
GTATGCGCCGGGAAAGGAGAGACCCAGGCAGCAAGAGGTAGGTGGAGCGT
GCTGTGGGAGGGCGTGGGACGGAGCCGCAGGCCGCGTGCTTGGAAAAAAC
GAGGTGGCGTCATGCCTGTGATGTGTCCCTTATGTTATTTACTAACTATC
ATCCCGGCAGGCTGTTACGTATGACGTGTTGACGGCAAAGCAGCTCACGT
TTGTTCCGTTTACTTGTATGAACAGAGAAAGGGTCCGGATGTTCGTGGCT
ATCAAGGTGTGACCGCTGACGGTAGTTCGAGGTGCGTCGAAGAAACAGTC
TTCGCTCCAGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14869:1589..1949-

>mRNA_H-canaliculatus_F_contig14869.3678.1 ID=mRNA_H-canaliculatus_F_contig14869.3678.1|Name=mRNA_H-canaliculatus_F_contig14869.3678.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=342bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14869:1589..1949- (Hapterophycus canaliculatus Oshoro5f female)
TCGCCAGCTGAACGTAGTGTTTGTAGCCAGGGTGGCAAAAAAGGACGTGG
GTATGCGCCGGGAAAGGAGAGACCCAGGCAGCAAGAGTCGCCAGCTGAAC
GTAGTGTTTGTAGCCAGGGTGGCAAAAAAGGACGTGGGTATGCGCCGGGA
AAGGAGAGACCCAGGCAGCAAGAGAGAAAGGGTCCGGATGTTCGTGGCTA
TCAAGGTGTGACCGCTGACGGTAGTTCGAGGTGCGTCGAAGAAACAGTCT
TCGCTCCAAGAAAGGGTCCGGATGTTCGTGGCTATCAAGGTGTGACCGCT
GACGGTAGTTCGAGGTGCGTCGAAGAAACAGTCTTCGCTCCA
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