mRNA_H-canaliculatus_F_contig14849.3670.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14849.3670.1
Unique NamemRNA_H-canaliculatus_F_contig14849.3670.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14849.3670.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14849contigH-canaliculatus_F_contig14849:1044..1695 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size629
Cds size627
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929228.0103314-CDS-H-canaliculatus_F_contig14849:1043..12881622929228.0103314-CDS-H-canaliculatus_F_contig14849:1043..1288Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14849 1044..1288 -
1696845726.0167267-CDS-H-canaliculatus_F_contig14849:1043..12881696845726.0167267-CDS-H-canaliculatus_F_contig14849:1043..1288Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14849 1044..1288 -
1622929228.0274837-CDS-H-canaliculatus_F_contig14849:1313..16951622929228.0274837-CDS-H-canaliculatus_F_contig14849:1313..1695Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14849 1314..1695 -
1696845726.0253258-CDS-H-canaliculatus_F_contig14849:1313..16951696845726.0253258-CDS-H-canaliculatus_F_contig14849:1313..1695Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14849 1314..1695 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14849.3670.1prot_H-canaliculatus_F_contig14849.3670.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14849 1044..1695 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14849.3670.1

>prot_H-canaliculatus_F_contig14849.3670.1 ID=prot_H-canaliculatus_F_contig14849.3670.1|Name=mRNA_H-canaliculatus_F_contig14849.3670.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=209bp
HIPGLSSPLDVRGGFLDTHIYIYSKISMKKWHASCSVRNTHEVCVVCGVK
SLVNGQLYMRSSMSVNHRTCTDPTSPIPHGVLRRTKTGAGRRGRRWPRGL
PSLRHHARRTGKGPRRDGSRTPPPLLLLDVLPSTARVKPAAGVRAVSTTH
DARRTAHGARRTEQTGRATRSLARRPARARTSPSPRRARSAGPTLRARPA
SRGRRTEAG
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mRNA from alignment at H-canaliculatus_F_contig14849:1044..1695-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14849.3670.1 ID=mRNA_H-canaliculatus_F_contig14849.3670.1|Name=mRNA_H-canaliculatus_F_contig14849.3670.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=652bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14849:1044..1695- (Hapterophycus canaliculatus Oshoro5f female)
CACATTCCCGGGTTGTCGTCGCCCCTTGACGTCCGTGGAGGGTTTTTGGA
CACACACATATATATATATAGTAAAATAAGCATGAAAAAATGGCATGCAT
CCTGTTCGGTTCGCAACACGCACGAGGTGTGTGTGGTCTGCGGCGTAAAA
AGTCTTGTCAATGGACAACTCTACATGAGGTCGTCCATGTCCGTCAACCA
CCGAACTTGTACGGATCCTACTTCACCCATTCCACACGGCGTGCTGCGAC
GGACTAAGACGGGGGCAGGGCGGCGAGGCCGGCGGTGGCCGCGCGGCCTG
CCTTCTCTTCGCCACCACGCCCGGAGGACGGGAAAAGGCCCTCGCCGCGA
CGGCTCTCGAACCCCCCCCCCCCTCCTCCTCCGTCCGAAGAGACCGCACC
GGAACAGTCGACGTGCTTCCTTCCACGGCGCGCGTCAAGCCCGCGGCTGG
GGTGCGTGCCGTCTCGACGACGCACGACGCACGACGCACGGCGCACGGCG
CAAGGCGCACGGAACAAACGGGGCGCGCTACACGCTCCCTCGCGCGCCGC
CCAGCACGCGCGCGTACGTCACCAAGTCCTCGTCGCGCTCGAAGTGCCGG
TCCCACTCTGCGTGCCCGACCTGCCAGCCGTGGTCGGCGTACCGAGGCGG
GC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14849:1044..1695-

>mRNA_H-canaliculatus_F_contig14849.3670.1 ID=mRNA_H-canaliculatus_F_contig14849.3670.1|Name=mRNA_H-canaliculatus_F_contig14849.3670.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1254bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14849:1044..1695- (Hapterophycus canaliculatus Oshoro5f female)
CACATTCCCGGGTTGTCGTCGCCCCTTGACGTCCGTGGAGGGTTTTTGGA
CACACACATATATATATATAGTAAAATAAGCATGAAAAAATGGCATGCAT
CCTGTTCGGTTCGCAACACGCACGAGGTGTGTGTGGTCTGCGGCGTAAAA
AGTCTTGTCAATGGACAACTCTACATGAGGTCGTCCATGTCCGTCAACCA
CCGAACTTGTACGGATCCTACTTCACCCATTCCACACGGCGTGCTGCGAC
GGACTAAGACGGGGGCAGGGCGGCGAGGCCGGCGGTGGCCGCGCGGCCTG
CCTTCTCTTCGCCACCACGCCCGGAGGACGGGAAAAGGCCCTCGCCGCGA
CGGCTCTCGAACCCCCCCCCCCCTCCTCCTCCCACATTCCCGGGTTGTCG
TCGCCCCTTGACGTCCGTGGAGGGTTTTTGGACACACACATATATATATA
TAGTAAAATAAGCATGAAAAAATGGCATGCATCCTGTTCGGTTCGCAACA
CGCACGAGGTGTGTGTGGTCTGCGGCGTAAAAAGTCTTGTCAATGGACAA
CTCTACATGAGGTCGTCCATGTCCGTCAACCACCGAACTTGTACGGATCC
TACTTCACCCATTCCACACGGCGTGCTGCGACGGACTAAGACGGGGGCAG
GGCGGCGAGGCCGGCGGTGGCCGCGCGGCCTGCCTTCTCTTCGCCACCAC
GCCCGGAGGACGGGAAAAGGCCCTCGCCGCGACGGCTCTCGAACCCCCCC
CCCCCTCCTCCTCCTCGACGTGCTTCCTTCCACGGCGCGCGTCAAGCCCG
CGGCTGGGGTGCGTGCCGTCTCGACGACGCACGACGCACGACGCACGGCG
CACGGCGCAAGGCGCACGGAACAAACGGGGCGCGCTACACGCTCCCTCGC
GCGCCGCCCAGCACGCGCGCGTACGTCACCAAGTCCTCGTCGCGCTCGAA
GTGCCGGTCCCACTCTGCGTGCCCGACCTGCCAGCCGTGGTCGGCGTACC
GAGGCGGGCTCGACGTGCTTCCTTCCACGGCGCGCGTCAAGCCCGCGGCT
GGGGTGCGTGCCGTCTCGACGACGCACGACGCACGACGCACGGCGCACGG
CGCAAGGCGCACGGAACAAACGGGGCGCGCTACACGCTCCCTCGCGCGCC
GCCCAGCACGCGCGCGTACGTCACCAAGTCCTCGTCGCGCTCGAAGTGCC
GGTCCCACTCTGCGTGCCCGACCTGCCAGCCGTGGTCGGCGTACCGAGGC
GGGC
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