mRNA_H-canaliculatus_F_contig14841.3667.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14841.3667.1
Unique NamemRNA_H-canaliculatus_F_contig14841.3667.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig14841.3667.1 vs. uniprot
Match: D8LSN8_ECTSI (WD-40 repeat family protein / mitotic checkpoint protein, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSN8_ECTSI)

HSP 1 Score: 316 bits (810), Expect = 4.040e-107
Identity = 149/165 (90.30%), Postives = 159/165 (96.36%), Query Frame = 1 
Query:    1 PDQVFTMSVSDRRAVVGTSNKHIWVYDMRSLAEPEQRRLSSLKFQTRCVRIFPDQTGYAVGSVEGRVAVEYFDTSKESQDNKYAFKCHRKGDQVFPVNTLAFHPIYGTFASGGCDKMVNIWDGKNKKRLWQSSPYLTGIASLAFNHDGSRLAIAASYTFEQGAIA 495
            P +VFTMSVSD RAVVGTSN+HIWVYDMRSLAEPEQRR+SSLK+QTRCVRIFPDQ GYAVGSVEGRVAVEYFDTSKESQDNKYAFKCHRKGDQVFPVN +AFHP+YGTFASGGCDKMVNIWDGKNKKRLWQSS Y TGI+SL+FNHDG+RLAIA+SYTFEQGAIA
Sbjct:  104 PGKVFTMSVSDMRAVVGTSNRHIWVYDMRSLAEPEQRRVSSLKYQTRCVRIFPDQKGYAVGSVEGRVAVEYFDTSKESQDNKYAFKCHRKGDQVFPVNAMAFHPVYGTFASGGCDKMVNIWDGKNKKRLWQSSAYNTGISSLSFNHDGTRLAIASSYTFEQGAIA 268
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BLAST of mRNA_H-canaliculatus_F_contig14841.3667.1 vs. uniprot
Match: A0A7S2UWG3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWG3_9STRA)

HSP 1 Score: 233 bits (594), Expect = 4.350e-74
Identity = 112/165 (67.88%), Postives = 133/165 (80.61%), Query Frame = 1 
Query:    1 PDQVFTMSVSDRRAVVGTSNKHIWVYDMRSL-AEPEQRRLSSLKFQTRCVRIFPDQTGYAVGSVEGRVAVEYFDTSKESQDNKYAFKCHRKGDQVFPVNTLAFHPIYGTFASGGCDKMVNIWDGKNKKRLWQSSPYLTGIASLAFNHDGSRLAIAASYTFEQGAI 492
            P +VFTM++SD R VVGTS + +  YDMR L A PE +R SSLK+QTR +R F D+TGYA+GS+EGRVAVE+FD S E+Q  KYAFKCHR  D +FPVN +AFHPI+GTFA+GGCD +VN+WDG+NKKRL Q   Y TGI+SLAFNHDGS LAIA SYTFEQG I
Sbjct:  117 PGKVFTMALSDNRVVVGTSGRQVVTYDMRRLTAGPETQRESSLKYQTRVIRCFNDRTGYALGSIEGRVAVEFFDPSPEAQAKKYAFKCHRTADTIFPVNAMAFHPIFGTFATGGCDGIVNVWDGQNKKRLSQFPKYQTGISSLAFNHDGSLLAIAVSYTFEQGEI 281
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BLAST of mRNA_H-canaliculatus_F_contig14841.3667.1 vs. uniprot
Match: V4NN87_EUTSA (Uncharacterized protein n=1 Tax=Eutrema salsugineum TaxID=72664 RepID=V4NN87_EUTSA)

HSP 1 Score: 218 bits (556), Expect = 2.340e-69
Identity = 103/165 (62.42%), Postives = 132/165 (80.00%), Query Frame = 1 
Query:    4 DQVFTMSVSDRRAVVGTSNKHIWVYDMRSLAEPEQRRLSSLKFQTRCVRIFPDQTGYAVGSVEGRVAVEYFDTSKESQDNKYAFKCHRKG----DQVFPVNTLAFHPIYGTFASGGCDKMVNIWDGKNKKRLWQSSPYLTGIASLAFNHDGSRLAIAASYTFEQG 486
            ++V+++S+   R VV T+ +HI VYD+R++++PEQRR SSLK+QTRCVR +P+ TGYA+ SVEGRVA+E+FD S+ +Q  KYAFKCHRK     D V+ VN +AFHPIYGTFA+GGCD  VNIWDG NKKRL+Q S YLT IA+L+FN DG  LA+A+SYTFE G
Sbjct:   36 ERVYSLSLVGNRLVVATAGRHINVYDLRNMSQPEQRRESSLKYQTRCVRSYPNGTGYALSSVEGRVAMEFFDPSEAAQAKKYAFKCHRKSEAGRDIVYSVNAIAFHPIYGTFATGGCDGFVNIWDGTNKKRLYQYSKYLTSIAALSFNRDGQLLAVASSYTFEDG 200
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BLAST of mRNA_H-canaliculatus_F_contig14841.3667.1 vs. uniprot
Match: BUB31_ARATH (Mitotic checkpoint protein BUB3.1 n=19 Tax=Brassicaceae TaxID=3700 RepID=BUB31_ARATH)

HSP 1 Score: 221 bits (562), Expect = 8.000e-69
Identity = 101/166 (60.84%), Postives = 135/166 (81.33%), Query Frame = 1 
Query:    1 PDQVFTMSVSDRRAVVGTSNKHIWVYDMRSLAEPEQRRLSSLKFQTRCVRIFPDQTGYAVGSVEGRVAVEYFDTSKESQDNKYAFKCHRKG----DQVFPVNTLAFHPIYGTFASGGCDKMVNIWDGKNKKRLWQSSPYLTGIASLAFNHDGSRLAIAASYTFEQG 486
            P++V++MS+   R VV T+ +H+ +YD+R++++PEQRR SSLK+QTRCVR +P+ TGYA+ SVEGRVA+E+FD S+ +Q  KYAFKCHRK     D V+PVN++AFHPIYGTFA+GGCD  VNIWDG NKKRL+Q S Y T I++L+F+ DG  LA+A+SYTFE+G
Sbjct:  144 PERVYSMSLVGHRLVVATAGRHVNIYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEAAQAKKYAFKCHRKSEAGRDIVYPVNSIAFHPIYGTFATGGCDGFVNIWDGNNKKRLYQYSKYPTSISALSFSRDGQLLAVASSYTFEEG 309
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BLAST of mRNA_H-canaliculatus_F_contig14841.3667.1 vs. uniprot
Match: A0A5J4YAF9_9CHLO (Mitotic checkpoint BUB3-like n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4YAF9_9CHLO)

HSP 1 Score: 220 bits (561), Expect = 9.240e-69
Identity = 105/170 (61.76%), Postives = 136/170 (80.00%), Query Frame = 1 
Query:    1 PDQVFTMSVSDRRAVVGTSNKHIWVYDMRSL--AEPEQRRLSSLKFQTRCVRIFPDQTGYAVGSVEGRVAVEYFDTSKESQDNKYAFKCHRKG----DQVFPVNTLAFHPIYGTFASGGCDKMVNIWDGKNKKRLWQSSPYLTGIASLAFNHDGSRLAIAASYTFEQGAI 492
            P +VF+M+ S  R VVGTS +H+ +YD+RS+   +PEQ R SSLK+QTRC+R +P+ TGYA+GS+EGRVA+EYFD S++ Q  KYAFKCHR+     D VFPVN +AFHPI+GTFA+GGCD +VNIWDG++KKRL+Q + Y T IA++AFN DGS LA+A+SYT EQG I
Sbjct:  141 PGKVFSMAQSGSRMVVGTSGRHVLIYDLRSIKSGQPEQTRESSLKYQTRCIRCYPNGTGYALGSIEGRVAMEYFDNSEQVQAKKYAFKCHRRSEAGRDVVFPVNAIAFHPIFGTFATGGCDGVVNIWDGEHKKRLFQIAKYPTSIAAVAFNADGSLLAVASSYTHEQGDI 310
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BLAST of mRNA_H-canaliculatus_F_contig14841.3667.1 vs. uniprot
Match: UPI001C276B2B (mitotic checkpoint protein BUB3.1-like isoform X2 n=1 Tax=Salvia splendens TaxID=180675 RepID=UPI001C276B2B)

HSP 1 Score: 219 bits (557), Expect = 1.010e-68
Identity = 100/166 (60.24%), Postives = 133/166 (80.12%), Query Frame = 1 
Query:    1 PDQVFTMSVSDRRAVVGTSNKHIWVYDMRSLAEPEQRRLSSLKFQTRCVRIFPDQTGYAVGSVEGRVAVEYFDTSKESQDNKYAFKCHRKG----DQVFPVNTLAFHPIYGTFASGGCDKMVNIWDGKNKKRLWQSSPYLTGIASLAFNHDGSRLAIAASYTFEQG 486
            P++V++MSV   R VV T+ +H+ VYD+R++++PEQRR SSLK+QTRCVR +P+ TGYA+ SVEGRVA+E+FD S+  Q  KYAFKCHRK     D V+PVN +AFHPIYGTFA+GGCD  VN+WDG NKKRL+Q + Y T IA+++F+ DG  LA+A+SYT+E+G
Sbjct:   93 PERVYSMSVVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSETGQSKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGYVNVWDGNNKKRLYQYTKYPTSIAAVSFSRDGRLLAVASSYTYEEG 258
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BLAST of mRNA_H-canaliculatus_F_contig14841.3667.1 vs. uniprot
Match: A0A835ZK40_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZK40_9STRA)

HSP 1 Score: 220 bits (560), Expect = 1.200e-68
Identity = 101/162 (62.35%), Postives = 125/162 (77.16%), Query Frame = 1 
Query:    1 PDQVFTMSVSDRRAVVGTSNKHIWVYDMRSLAEPEQRRLSSLKFQTRCVRIFPDQTGYAVGSVEGRVAVEYFDTSKESQDNKYAFKCHRKGDQVFPVNTLAFHPIYGTFASGGCDKMVNIWDGKNKKRLWQSSPYLTGIASLAFNHDGSRLAIAASYTFEQG 486
            P +V++M V+  + VVG SN+ + VYD+R L  PEQ R SSLKFQTRC+++ PD +GY + SVEGRVAVEY D S E Q  KYAFKCHR+GD +FPVN +AFHP++GTFA+GGCD  VN+WDG NKKRL   + Y T I+S+AFN DG  LAIA+SYTFEQG
Sbjct:  142 PGKVYSMDVNGSKLVVGCSNRFVVVYDLRKLDRPEQMRESSLKFQTRCIKLMPDNSGYVLSSVEGRVAVEYLDPSPEVQSKKYAFKCHRQGDTIFPVNAMAFHPVFGTFATGGCDGTVNVWDGTNKKRLINYTGYPTSISSVAFNRDGMLLAIASSYTFEQG 303
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BLAST of mRNA_H-canaliculatus_F_contig14841.3667.1 vs. uniprot
Match: A0A0K9QJH6_SPIOL (Uncharacterized protein n=4 Tax=Caryophyllales TaxID=3524 RepID=A0A0K9QJH6_SPIOL)

HSP 1 Score: 220 bits (561), Expect = 1.230e-68
Identity = 100/166 (60.24%), Postives = 134/166 (80.72%), Query Frame = 1 
Query:    1 PDQVFTMSVSDRRAVVGTSNKHIWVYDMRSLAEPEQRRLSSLKFQTRCVRIFPDQTGYAVGSVEGRVAVEYFDTSKESQDNKYAFKCHRKG----DQVFPVNTLAFHPIYGTFASGGCDKMVNIWDGKNKKRLWQSSPYLTGIASLAFNHDGSRLAIAASYTFEQG 486
            P++V++MS+   R VV T+ +H+ VYD+R++++PEQRR SSLK+QTRCVR +P+ TGYA+ SVEGRVA+E+FD S+  Q  KYAFKCHRK     D V+PVN ++FHPIYGTFA+GGCD +VN+WDG NKKRL+Q + Y T I++L+FN DG  LA+AASYT+E+G
Sbjct:  147 PERVYSMSLVGHRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEAGQSKKYAFKCHRKSEAGRDIVYPVNAISFHPIYGTFATGGCDGIVNVWDGNNKKRLYQYAKYPTSISALSFNRDGRLLAVAASYTYEEG 312
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BLAST of mRNA_H-canaliculatus_F_contig14841.3667.1 vs. uniprot
Match: A0A166IB96_DAUCS (Uncharacterized protein n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=A0A166IB96_DAUCS)

HSP 1 Score: 219 bits (559), Expect = 2.270e-68
Identity = 100/165 (60.61%), Postives = 133/165 (80.61%), Query Frame = 1 
Query:    4 DQVFTMSVSDRRAVVGTSNKHIWVYDMRSLAEPEQRRLSSLKFQTRCVRIFPDQTGYAVGSVEGRVAVEYFDTSKESQDNKYAFKCHRKG----DQVFPVNTLAFHPIYGTFASGGCDKMVNIWDGKNKKRLWQSSPYLTGIASLAFNHDGSRLAIAASYTFEQG 486
            ++V+++SV+  R V  T+ +H+ VYD+R++++PEQRR SSLK+QTRCVR +P+QTGYA+ SVEGRVA+E+FDTS+  Q  KYAFKCHRK     D V+PVN +AFHPIYGTFA+GGCD  VN+WDG NKKRL+Q   Y + IA+L+F+ DG  LAIA+SYT+E+G
Sbjct:  145 ERVYSLSVNGHRLVAATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNQTGYALSSVEGRVAMEFFDTSEAGQSKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYPKYPSSIAALSFSRDGKLLAIASSYTYEEG 309
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BLAST of mRNA_H-canaliculatus_F_contig14841.3667.1 vs. uniprot
Match: S8CXE7_9LAMI (Uncharacterized protein (Fragment) n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8CXE7_9LAMI)

HSP 1 Score: 219 bits (558), Expect = 2.270e-68
Identity = 101/166 (60.84%), Postives = 132/166 (79.52%), Query Frame = 1 
Query:    1 PDQVFTMSVSDRRAVVGTSNKHIWVYDMRSLAEPEQRRLSSLKFQTRCVRIFPDQTGYAVGSVEGRVAVEYFDTSKESQDNKYAFKCHRKG----DQVFPVNTLAFHPIYGTFASGGCDKMVNIWDGKNKKRLWQSSPYLTGIASLAFNHDGSRLAIAASYTFEQG 486
            P++V++MS+S  R VV T+ +H+ VYD+R++++PEQRR SSLK+QTRCVR +P+  GYA+ SVEGRVA+E+FD S+  Q  KYAFKCHRK     D V+PVN +AFHPIYGTFA+GGCD  VN+WDG NKKRL+Q S Y T IA+L+F+ DG  LA+A+SYT+E G
Sbjct:  136 PERVYSMSLSGNRLVVATAGRHVNVYDIRNMSQPEQRRESSLKYQTRCVRCYPNGLGYALSSVEGRVAMEFFDLSEAGQSKKYAFKCHRKSEAGKDIVYPVNAIAFHPIYGTFATGGCDGYVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGKLLAVASSYTYEDG 301
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14841.3667.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSN8_ECTSI4.040e-10790.30WD-40 repeat family protein / mitotic checkpoint p... [more]
A0A7S2UWG3_9STRA4.350e-7467.88Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
V4NN87_EUTSA2.340e-6962.42Uncharacterized protein n=1 Tax=Eutrema salsugineu... [more]
BUB31_ARATH8.000e-6960.84Mitotic checkpoint protein BUB3.1 n=19 Tax=Brassic... [more]
A0A5J4YAF9_9CHLO9.240e-6961.76Mitotic checkpoint BUB3-like n=1 Tax=Trebouxia sp.... [more]
UPI001C276B2B1.010e-6860.24mitotic checkpoint protein BUB3.1-like isoform X2 ... [more]
A0A835ZK40_9STRA1.200e-6862.35WD40-repeat-containing domain protein n=1 Tax=Trib... [more]
A0A0K9QJH6_SPIOL1.230e-6860.24Uncharacterized protein n=4 Tax=Caryophyllales Tax... [more]
A0A166IB96_DAUCS2.270e-6860.61Uncharacterized protein n=1 Tax=Daucus carota subs... [more]
S8CXE7_9LAMI2.270e-6860.84Uncharacterized protein (Fragment) n=1 Tax=Genlise... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14841contigH-canaliculatus_F_contig14841:412..2471 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score310.5
Seed ortholog evalue4.7e-82
Seed eggNOG ortholog2880.D8LSN8
Preferred nameBUB3
KEGG koko:K02180,ko:K04532,ko:K14298
KEGG TC1.I.1
KEGG Pathwayko03013,ko04110,ko04111,ko05010,ko05164,ko05166,map03013,map04110,map04111,map05010,map05164,map05166
KEGG ModuleM00427
GOsGO:0000003,GO:0000070,GO:0000075,GO:0000228,GO:0000278,GO:0000280,GO:0000775,GO:0000776,GO:0000777,GO:0000778,GO:0000779,GO:0000780,GO:0000793,GO:0000794,GO:0000819,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005829,GO:0006508,GO:0006511,GO:0006807,GO:0006996,GO:0007049,GO:0007059,GO:0007088,GO:0007093,GO:0007094,GO:0007154,GO:0007165,GO:0007275,GO:0007346,GO:0008104,GO:0008150,GO:0008152,GO:0008608,GO:0009056,GO:0009057,GO:0009790,GO:0009792,GO:0009987,GO:0010498,GO:0010564,GO:0010639,GO:0010948,GO:0010965,GO:0016043,GO:0019538,GO:0019941,GO:0022402,GO:0022414,GO:0023052,GO:0030071,GO:0030163,GO:0031145,GO:0031570,GO:0031577,GO:0031974,GO:0031981,GO:0032182,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033047,GO:0033048,GO:0033313,GO:0033316,GO:0033597,GO:0034613,GO:0035556,GO:0040020,GO:0043130,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044774,GO:0044779,GO:0045786,GO:0045835,GO:0045839,GO:0045841,GO:0045930,GO:0048285,GO:0048519,GO:0048523,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051129,GO:0051179,GO:0051276,GO:0051321,GO:0051445,GO:0051447,GO:0051603,GO:0051641,GO:0051716,GO:0051726,GO:0051783,GO:0051784,GO:0051983,GO:0051985,GO:0065007,GO:0070013,GO:0070727,GO:0071173,GO:0071174,GO:0071704,GO:0071840,GO:0072395,GO:0072413,GO:0072416,GO:0072477,GO:0072480,GO:0072486,GO:0098687,GO:0098813,GO:0140014,GO:1901564,GO:1901565,GO:1901575,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1901993,GO:1901994,GO:1902099,GO:1902100,GO:1902102,GO:1902103,GO:1903046,GO:1903047,GO:1905132,GO:1905133,GO:1905818,GO:1905819,GO:1990298,GO:2000241,GO:2000242,GO:2000816,GO:2001251
EggNOG free text desc.spindle assembly checkpoint
EggNOG OGsKOG1036@1,KOG1036@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko03036,ko03041,ko04121
Hectar predicted targeting categoryother localisation
Exons3
Model size498
Cds size480
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14841.3667.1prot_H-canaliculatus_F_contig14841.3667.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14841 412..2453 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929227.7377145-CDS-H-canaliculatus_F_contig14841:411..5611622929227.7377145-CDS-H-canaliculatus_F_contig14841:411..561Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14841 412..561 -
1696845725.9141953-CDS-H-canaliculatus_F_contig14841:411..5611696845725.9141953-CDS-H-canaliculatus_F_contig14841:411..561Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14841 412..561 -
1622929227.760672-CDS-H-canaliculatus_F_contig14841:1411..15311622929227.760672-CDS-H-canaliculatus_F_contig14841:1411..1531Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14841 1412..1531 -
1696845725.9320912-CDS-H-canaliculatus_F_contig14841:1411..15311696845725.9320912-CDS-H-canaliculatus_F_contig14841:1411..1531Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14841 1412..1531 -
1622929227.780267-CDS-H-canaliculatus_F_contig14841:2243..24531622929227.780267-CDS-H-canaliculatus_F_contig14841:2243..2453Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14841 2244..2453 -
1696845725.9418116-CDS-H-canaliculatus_F_contig14841:2243..24531696845725.9418116-CDS-H-canaliculatus_F_contig14841:2243..2453Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14841 2244..2453 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929227.8001678-UTR-H-canaliculatus_F_contig14841:2453..24711622929227.8001678-UTR-H-canaliculatus_F_contig14841:2453..2471Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14841 2454..2471 -
1696845725.9514081-UTR-H-canaliculatus_F_contig14841:2453..24711696845725.9514081-UTR-H-canaliculatus_F_contig14841:2453..2471Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14841 2454..2471 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14841.3667.1

>prot_H-canaliculatus_F_contig14841.3667.1 ID=prot_H-canaliculatus_F_contig14841.3667.1|Name=mRNA_H-canaliculatus_F_contig14841.3667.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=160bp
MSVSDRRAVVGTSNKHIWVYDMRSLAEPEQRRLSSLKFQTRCVRIFPDQT
GYAVGSVEGRVAVEYFDTSKESQDNKYAFKCHRKGDQVFPVNTLAFHPIY
GTFASGGCDKMVNIWDGKNKKRLWQSSPYLTGIASLAFNHDGSRLAIAAS
YTFEQGAIA*
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mRNA from alignment at H-canaliculatus_F_contig14841:412..2471-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14841.3667.1 ID=mRNA_H-canaliculatus_F_contig14841.3667.1|Name=mRNA_H-canaliculatus_F_contig14841.3667.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2060bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14841:412..2471- (Hapterophycus canaliculatus Oshoro5f female)
CCCGACCAGGTATTCACGATGTCGGTGTCGGACCGGCGAGCCGTCGTCGG
AACATCGAACAAGCACATCTGGGTTTACGATATGCGGAGCCTTGCGGAGC
CGGAGCAGAGGCGCCTCAGCAGCCTCAAGTTCCAGACGCGGTGCGTGAGG
ATTTTCCCGGACCAGACCGGGTACGCGGTGGGATCGGTGGAGGGGAGGGT
GGCCGTCGAGTACTTCGACACCTCCAAGGTCAGTCGGCGTGGGTCATGTC
TCTGGTGGTGGTGGTGATGCTTGTTATTGTTATTTCTGTTGTTGCGGTTG
CTGCTGGGTTTTTTTTATGCTGTTACTGCTGCTGCTGTTGCTGTTGCTGT
TGTTGTTGTTGTTTTTGTTGCTGCTGCTGCTTTTGTCTTTTGCTGCTGTT
GTTGTTGTTGTTGTTGCCGGTATTGTTGTTGGTGCTGCATCGTTACGGTA
AGACCGGCGGGCGCTTGCAAGTGGACGCGCGATCTTCTCCTTCTCTGAGA
TCTCAACGAATCGTCAACCAACCATTCCATGGCCGCTTTCATGGTTGTGC
GTGCGTGTGCGTGAAAGAGCCTGTATGTGTATTTCGAAGAGCATGAGCGC
AACATTCAGAAGCAATGCACGAGCACTCTCTTTTGCGCCACCTTGGAATT
CTGAAAAATTGTTGTTGTGCATTGTTTTCATAATTTTTTGTTTTGTTCTC
GGCAAGAAAAATCGGGAGGAAACTCCTCAGAGACATGACAGGGCCCAGGG
AGGGTAGGTCTTGAATCTGTTTTGCCATCGGGGCTCAGTGCACCGAACGG
GACACAGCCGTCAACAAGAGATAAAAATGAAAAACGCTGCGAGACTCGCC
TCAAAAAGTATTTTTTCGAGACGTCAAAACGAGATTCGGGGTGTGTCCTT
GTTCTGAAGAGTGGGGTGCGCCGCCGCTTGCACTAACCAGGAATCCCAGG
ACAACAAGTACGCCTTCAAGTGCCACCGGAAGGGAGATCAGGTTTTCCCC
GTCAACACGCTGGCCTTCCACCCAATCTACGGAACGTTCGCGTCAGGGGG
CTGCGATAAGGTGAGCGAAAAAAAGAAAAGAAAGGTGTCTGGCGGAATCG
TCCACGCGCGTCTGGAGATGGAAACACCGTGCAGGTTACTCTGCTGGGGT
CGGCGTGGAGGGAGGGGTTCCCGGTTGTGCTCGGGGTGGTGGGGCGAGGG
GGTGCGTATGGCCGATCTACGTCGATGGTCGGGGTTCAACGGCTTGTGCC
CTCGCAAGCCGGGCTGGGATGTCCGCCCAAATTTCTGGAAGAACGACGTG
CGCGTGTAGACCGCTGCGTCTCGGCCGTGGCTTGCGTGAGTTTGGAGGCG
ATTTGTGTTTGGAGCGAGAGACGCGCGACGAAAGAGGTAGGAGAGGTTAT
GGCTCGGAGGTGATAAAACCACTCTCCGTGCCTGCCGATTTTTTATCGCC
TTCCCGCAGGCTCCGTTATCCTTCGTCGCTGTTACAAGTATCGGCCAGTT
GATAGGGAATACCCGCCACTTTGAAGGCAACTATCGCTGTGTTTAGGCAA
CCCCCAACGCGGTCCTCGCGAAGCCTGCGACTCGTTGGGCAGTGACTGCC
GCATCGTCGGAAAGTGTCATCCATTTTGTGGCACTGCTGTGTGGGCAACA
ACTACGCCCTCGTTCGTACGCAATGGCTCACTTCCGCCTGATGCTCAAAA
CATTCCCCCTCTTTTTTGTCGACGGTACACATGCTTCCGTCGAAGGCGAC
GCTCTCCCCTCGCAACATCGTGCTCCGTACTGCTCTTGACGCGTGTTCAT
TTTTCTTTTTGTTCTGCGCCGTAACACGCTTCCGGCCGACGAACGTCACC
CCCCTCGATGCCACCCACCTGCGTAACCCCCTTCCGTCTCCCCCTTCCGG
TGTCTCGCAGATGGTGAACATCTGGGACGGGAAAAACAAGAAGCGGCTGT
GGCAATCAAGCCCCTACCTCACTGGCATTGCCTCGCTGGCGTTCAACCAC
GACGGCTCGCGGCTCGCAATCGCCGCTTCCTACACGTTCGAACAGGGCGC
CATCGCGTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14841:412..2471-

>mRNA_H-canaliculatus_F_contig14841.3667.1 ID=mRNA_H-canaliculatus_F_contig14841.3667.1|Name=mRNA_H-canaliculatus_F_contig14841.3667.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=960bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14841:412..2471- (Hapterophycus canaliculatus Oshoro5f female)
ATGTCGGTGTCGGACCGGCGAGCCGTCGTCGGAACATCGAACAAGCACAT
CTGGGTTTACGATATGCGGAGCCTTGCGGAGCCGGAGCAGAGGCGCCTCA
GCAGCCTCAAGTTCCAGACGCGGTGCGTGAGGATTTTCCCGGACCAGACC
GGGTACGCGGTGGGATCGGTGGAGGGGAGGGTGGCCGTCGAGTACTTCGA
CACCTCCAAGATGTCGGTGTCGGACCGGCGAGCCGTCGTCGGAACATCGA
ACAAGCACATCTGGGTTTACGATATGCGGAGCCTTGCGGAGCCGGAGCAG
AGGCGCCTCAGCAGCCTCAAGTTCCAGACGCGGTGCGTGAGGATTTTCCC
GGACCAGACCGGGTACGCGGTGGGATCGGTGGAGGGGAGGGTGGCCGTCG
AGTACTTCGACACCTCCAAGGAATCCCAGGACAACAAGTACGCCTTCAAG
TGCCACCGGAAGGGAGATCAGGTTTTCCCCGTCAACACGCTGGCCTTCCA
CCCAATCTACGGAACGTTCGCGTCAGGGGGCTGCGATAAGGAATCCCAGG
ACAACAAGTACGCCTTCAAGTGCCACCGGAAGGGAGATCAGGTTTTCCCC
GTCAACACGCTGGCCTTCCACCCAATCTACGGAACGTTCGCGTCAGGGGG
CTGCGATAAGATGGTGAACATCTGGGACGGGAAAAACAAGAAGCGGCTGT
GGCAATCAAGCCCCTACCTCACTGGCATTGCCTCGCTGGCGTTCAACCAC
GACGGCTCGCGGCTCGCAATCGCCGCTTCCTACACGTTCGAACAGGGCGC
CATCGCGTGAATGGTGAACATCTGGGACGGGAAAAACAAGAAGCGGCTGT
GGCAATCAAGCCCCTACCTCACTGGCATTGCCTCGCTGGCGTTCAACCAC
GACGGCTCGCGGCTCGCAATCGCCGCTTCCTACACGTTCGAACAGGGCGC
CATCGCGTGA
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