mRNA_H-canaliculatus_F_contig1484.3666.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1484.3666.1
Unique NamemRNA_H-canaliculatus_F_contig1484.3666.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1484.3666.1 vs. uniprot
Match: D7FYZ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYZ0_ECTSI)

HSP 1 Score: 86.7 bits (213), Expect = 2.760e-18
Identity = 44/69 (63.77%), Postives = 52/69 (75.36%), Query Frame = 1 
Query:    1 TNADDTVLGIGVETTAVAEEAIEKGRRVEFFVLDEDKRGVLENHIVDAFRTAHGRGLFQSRRG-QEVWV 204
            TNA DTVLGIGVETT    +AI +GRRVEF+V+DE KR  L+ +I  AF  AH  G+FQSRRG QEV+V
Sbjct:  210 TNAGDTVLGIGVETTTAPVDAISRGRRVEFYVMDESKRAALQTNIASAFHKAHSSGMFQSRRGGQEVFV 278
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BLAST of mRNA_H-canaliculatus_F_contig1484.3666.1 vs. uniprot
Match: A0A6H5KEI5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEI5_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 8.740e-17
Identity = 43/69 (62.32%), Postives = 52/69 (75.36%), Query Frame = 1 
Query:    1 TNADDTVLGIGVETTAVAEEAIEKGRRVEFFVLDEDKRGVLENHIVDAFRTAHGRGLFQSRRG-QEVWV 204
            TNA DTVLG+GVE+T VAE+AI +GRRVEF+V DE KR  L+  I  +F  AH  G+FQSRRG +EV V
Sbjct:  261 TNAGDTVLGVGVESTTVAEDAISRGRRVEFYVTDESKRASLQAKISSSFHKAHSSGMFQSRRGGKEVVV 329
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BLAST of mRNA_H-canaliculatus_F_contig1484.3666.1 vs. uniprot
Match: A0A6H5KE40_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE40_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 9.740e-17
Identity = 43/69 (62.32%), Postives = 51/69 (73.91%), Query Frame = 1 
Query:    1 TNADDTVLGIGVETTAVAEEAIEKGRRVEFFVLDEDKRGVLENHIVDAFRTAHGRGLFQSRRG-QEVWV 204
            TNA DTVLG+GVE+T VAE+AI +GRRVEF+V DE KR  L+  I   F  AH  G+FQSRRG +EV V
Sbjct:  119 TNAGDTVLGVGVESTTVAEDAISRGRRVEFYVTDESKRASLQAKISSTFHKAHSSGMFQSRRGGKEVVV 187
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BLAST of mRNA_H-canaliculatus_F_contig1484.3666.1 vs. uniprot
Match: A0A6H5JYC2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYC2_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 1.110e-16
Identity = 43/69 (62.32%), Postives = 51/69 (73.91%), Query Frame = 1 
Query:    1 TNADDTVLGIGVETTAVAEEAIEKGRRVEFFVLDEDKRGVLENHIVDAFRTAHGRGLFQSRR-GQEVWV 204
            TNA DTVLG+GVE+T VAE+AI +GRRVEF+V DE KR  L+  I   F  AH  G+FQSRR G+EV V
Sbjct:  279 TNAGDTVLGVGVESTTVAEDAISRGRRVEFYVTDESKRASLQAKISSTFHKAHSSGMFQSRRVGKEVVV 347
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BLAST of mRNA_H-canaliculatus_F_contig1484.3666.1 vs. uniprot
Match: A0A6H5JDB1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDB1_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 1.220e-16
Identity = 43/69 (62.32%), Postives = 51/69 (73.91%), Query Frame = 1 
Query:    1 TNADDTVLGIGVETTAVAEEAIEKGRRVEFFVLDEDKRGVLENHIVDAFRTAHGRGLFQSRRG-QEVWV 204
            TNA DTVLG+GVE+T VAE+AI +GRRVEF+V DE KR  L+  I   F  AH  G+FQSRRG +EV V
Sbjct:  871 TNAGDTVLGVGVESTTVAEDAISRGRRVEFYVTDESKRASLQAKISSTFHKAHSSGMFQSRRGGKEVVV 939
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BLAST of mRNA_H-canaliculatus_F_contig1484.3666.1 vs. uniprot
Match: A0A6H5JSZ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSZ7_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 3.560e-16
Identity = 36/59 (61.02%), Postives = 43/59 (72.88%), Query Frame = 1 
Query:    1 TNADDTVLGIGVETTAVAEEAIEKGRRVEFFVLDEDKRGVLENHIVDAFRTAHGRGLFQ 177
            TNA DTVLGIGVETT    +AI +GRRVEF+V+DE KR  L+ +I  AF  AH  G+FQ
Sbjct:   44 TNAGDTVLGIGVETTTAPVDAISRGRRVEFYVMDESKRAALQTNIASAFHKAHSSGMFQ 102
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BLAST of mRNA_H-canaliculatus_F_contig1484.3666.1 vs. uniprot
Match: A0A6H5K708_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K708_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 7.780e-16
Identity = 42/69 (60.87%), Postives = 51/69 (73.91%), Query Frame = 1 
Query:    1 TNADDTVLGIGVETTAVAEEAIEKGRRVEFFVLDEDKRGVLENHIVDAFRTAHGRGLFQSRRG-QEVWV 204
            TNA DTVLG+GVE+T VAE+AI +GRRVEF+V D  KR  L+  I  +F  AH  G+FQSRRG +EV V
Sbjct:  279 TNAGDTVLGVGVESTTVAEDAISRGRRVEFYVTDVSKRASLQAKISSSFHKAHSSGMFQSRRGGKEVVV 347
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1484.3666.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FYZ0_ECTSI2.760e-1863.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KEI5_9PHAE8.740e-1762.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KE40_9PHAE9.740e-1762.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYC2_9PHAE1.110e-1662.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JDB1_9PHAE1.220e-1662.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JSZ7_9PHAE3.560e-1661.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K708_9PHAE7.780e-1660.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1484contigH-canaliculatus_F_contig1484:22563..23083 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size205
Cds size204
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929227.6786947-CDS-H-canaliculatus_F_contig1484:22562..227391622929227.6786947-CDS-H-canaliculatus_F_contig1484:22562..22739Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1484 22563..22739 +
1696845725.894786-CDS-H-canaliculatus_F_contig1484:22562..227391696845725.894786-CDS-H-canaliculatus_F_contig1484:22562..22739Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1484 22563..22739 +
1622929227.695562-CDS-H-canaliculatus_F_contig1484:23056..230831622929227.695562-CDS-H-canaliculatus_F_contig1484:23056..23083Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1484 23057..23083 +
1696845725.9039671-CDS-H-canaliculatus_F_contig1484:23056..230831696845725.9039671-CDS-H-canaliculatus_F_contig1484:23056..23083Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1484 23057..23083 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1484.3666.1prot_H-canaliculatus_F_contig1484.3666.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1484 22563..23083 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1484.3666.1

>prot_H-canaliculatus_F_contig1484.3666.1 ID=prot_H-canaliculatus_F_contig1484.3666.1|Name=mRNA_H-canaliculatus_F_contig1484.3666.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=68bp
TNADDTVLGIGVETTAVAEEAIEKGRRVEFFVLDEDKRGVLENHIVDAFR
TAHGRGLFQSRRGQEVWV
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mRNA from alignment at H-canaliculatus_F_contig1484:22563..23083+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1484.3666.1 ID=mRNA_H-canaliculatus_F_contig1484.3666.1|Name=mRNA_H-canaliculatus_F_contig1484.3666.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=521bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1484:22563..23083+ (Hapterophycus canaliculatus Oshoro5f female)
ACTAATGCTGATGACACGGTGCTCGGTATCGGTGTGGAGACCACGGCTGT
CGCGGAAGAGGCCATCGAGAAAGGGCGGCGCGTCGAGTTTTTCGTTTTGG
ACGAAGACAAGCGCGGGGTGCTCGAAAATCACATCGTCGACGCCTTCCGC
ACGGCTCACGGCCGCGGATTGTTCCAGGTATTGGCGGGTGCTTCGTAACA
TCCTTGTGTGGTGCACACCCATGATTGGAAATATTCAAGAAAATTATCTG
TCTTTCCTCTGTGCAAGAATGTTGCGCGGGCAGCGTGTTTTCTTGAATCC
GGGGAGTGCCAAGTTCGTGGGAACGTATGGTCGTTCCGCATGTAGCAGCT
CCTGTCGGTGTGGCTGGCCGTGCATTTTTCACCAAAACGGGGTACTATCC
TCCAATTGCTTCAACGCGAACATTTTGTCGATGAACCACAGCGTGCTTGA
GGTACTGACAAGAGTTTCACGTGCCTGGTGTTGTTCAATGGCAGAGCCGG
CGTGGGCAGGAGGTCTGGGTG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1484:22563..23083+

>mRNA_H-canaliculatus_F_contig1484.3666.1 ID=mRNA_H-canaliculatus_F_contig1484.3666.1|Name=mRNA_H-canaliculatus_F_contig1484.3666.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=408bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1484:22563..23083+ (Hapterophycus canaliculatus Oshoro5f female)
ACTAATGCTGATGACACGGTGCTCGGTATCGGTGTGGAGACCACGGCTGT
CGCGGAAGAGGCCATCGAGAAAGGGCGGCGCGTCGAGTTTTTCGTTTTGG
ACGAAGACAAGCGCGGGGTGCTCGAAAATCACATCGTCGACGCCTTCCGC
ACGGCTCACGGCCGCGGATTGTTCCAGACTAATGCTGATGACACGGTGCT
CGGTATCGGTGTGGAGACCACGGCTGTCGCGGAAGAGGCCATCGAGAAAG
GGCGGCGCGTCGAGTTTTTCGTTTTGGACGAAGACAAGCGCGGGGTGCTC
GAAAATCACATCGTCGACGCCTTCCGCACGGCTCACGGCCGCGGATTGTT
CCAGAGCCGGCGTGGGCAGGAGGTCTGGGTGAGCCGGCGTGGGCAGGAGG
TCTGGGTG
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