mRNA_H-canaliculatus_F_contig1483.3659.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1483.3659.1
Unique NamemRNA_H-canaliculatus_F_contig1483.3659.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1483.3659.1 vs. uniprot
Match: D7G2P1_ECTSI (HMG box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2P1_ECTSI)

HSP 1 Score: 318 bits (814), Expect = 6.530e-103
Identity = 162/170 (95.29%), Postives = 166/170 (97.65%), Query Frame = 3 
Query:  642 QSKPQSAWMLFIQERREQVKRDNPDIAVTQQQKIMSEIWKTLGADEREAYRMRARDDQKRYKAEQADKPVAKKEDFYGNDERGQSTELVCPLGRIGRIIKLDQDVQSVTKEATALIGKAMELFTSLMAKESFSVAQSQNRRLLKLQDITDIMHNQDQFYWIKDDFPLPTR 1151
            QSKPQSAWMLFIQERREQVKRDNPDIAVTQQQKIMSEIWKTL +DEREAYR RARDDQKRYKAEQADKPV KKE+FY NDE+GQSTELVCP+GRIGRIIKLDQDVQSVTKEATALIGKAMELFTSLMAKESFSVAQSQNRRLLKLQDITDIMHNQDQFYWIKDDFPLPTR
Sbjct:  140 QSKPQSAWMLFIQERREQVKRDNPDIAVTQQQKIMSEIWKTLASDEREAYRTRARDDQKRYKAEQADKPVVKKEEFYTNDEKGQSTELVCPMGRIGRIIKLDQDVQSVTKEATALIGKAMELFTSLMAKESFSVAQSQNRRLLKLQDITDIMHNQDQFYWIKDDFPLPTR 309
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1483.3659.1 vs. uniprot
Match: A0A6H5KV94_9PHAE (HMG box domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV94_9PHAE)

HSP 1 Score: 318 bits (814), Expect = 2.080e-101
Identity = 162/170 (95.29%), Postives = 166/170 (97.65%), Query Frame = 3 
Query:  642 QSKPQSAWMLFIQERREQVKRDNPDIAVTQQQKIMSEIWKTLGADEREAYRMRARDDQKRYKAEQADKPVAKKEDFYGNDERGQSTELVCPLGRIGRIIKLDQDVQSVTKEATALIGKAMELFTSLMAKESFSVAQSQNRRLLKLQDITDIMHNQDQFYWIKDDFPLPTR 1151
            QSKPQSAWMLFIQERREQVKRDNPDIAVTQQQKIMSEIWKTL +DEREAYR RARDDQKRYKAEQADKPV KKE+FY NDE+GQSTELVCP+GRIGRIIKLDQDVQSVTKEATALIGKAMELFTSLMAKESFSVAQSQNRRLLKLQDITDIMHNQDQFYWIKDDFPLPTR
Sbjct:  247 QSKPQSAWMLFIQERREQVKRDNPDIAVTQQQKIMSEIWKTLASDEREAYRTRARDDQKRYKAEQADKPVVKKEEFYTNDEKGQSTELVCPMGRIGRIIKLDQDVQSVTKEATALIGKAMELFTSLMAKESFSVAQSQNRRLLKLQDITDIMHNQDQFYWIKDDFPLPTR 416
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1483.3659.1 vs. uniprot
Match: A0A835ZK76_9STRA (Histone-like transcription factor (CBF/NF-Y) and archaeal histone-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZK76_9STRA)

HSP 1 Score: 113 bits (282), Expect = 3.800e-24
Identity = 70/186 (37.63%), Postives = 99/186 (53.23%), Query Frame = 3 
Query:  657 SAWMLFIQERREQVKRDNPDIAVTQQQKIMSEIWKTLGADEREAYRMRARDDQKRYKAEQADK-----------------------PVAKKEDFYGNDERGQSTELVCPLGRIGRIIKLDQDVQSVTKEATALIGKAMELFTSLMAKESFSVAQSQNRRLLKLQDITDIMHNQDQFYWIKDDFPLP 1145
            SAW+LF+ + R++V+ +NPD++ +QQ K++S+IW+ L     E Y  RAR + KRY    AD                                        S E VCP+GRI RIIKLD +V +VTKEATAL+ KAM+LF   +A+ S+ +     RR +K QDI   +H  D+++W K DF  P
Sbjct:  172 SAWILFVNDYRDRVRSENPDLSCSQQSKVLSQIWQQLDRPTVEGYIERARAESKRYH-NLADSNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPPVSLEAVCPMGRIRRIIKLDPEVGNVTKEATALVEKAMQLFLEQLAQRSWEMCTEDGRRNIKTQDIAMCVHALDEYHWCKADFEKP 356
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1483.3659.1 vs. uniprot
Match: A0A4D9D0Z2_9STRA (HMG box domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D0Z2_9STRA)

HSP 1 Score: 112 bits (281), Expect = 1.620e-23
Identity = 73/172 (42.44%), Postives = 104/172 (60.47%), Query Frame = 3 
Query:  657 SAWMLFIQERREQVKRDNPDIAVTQQQKIMSEIWKTLGADEREAYRMRARDDQKRYKAE-------QADKPVAKKEDFYGND-ERGQ--STELVCPLGRIGRIIKLDQDVQSVTKEATALIGKAMELFTSLMAKESFSVAQSQNRRLLKLQDITDIMHNQDQFYWIKDDFPL 1142
            SAWMLF  E RE +K++ P + VT+Q KIMSE WKTL  + R  +  RA +D++RY+ E       QA K V K       D E G+  + E++ PL RI +I+KLD +V++V+KEA  L+GKA ELF  ++ +ES     S  RR LK  D+   M  Q +F +++ DFP+
Sbjct:  167 SAWMLFTAEARELLKKEQPSLRVTEQVKIMSEQWKTLDDEARRPFLERAANDKERYQEEKLRWEGNQAAKAVPKGGKELRKDVEAGRRLADEMLFPLARIRKIMKLDPEVKTVSKEAALLVGKATELFLDMIGEESHKA--SGRRRTLKSDDVAVAMRRQGKFAFLRPDFPM 336
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1483.3659.1 vs. uniprot
Match: D8LIR0_ECTSI (HMG box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIR0_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 1.420e-20
Identity = 56/166 (33.73%), Postives = 98/166 (59.04%), Query Frame = 3 
Query:  645 SKPQSAWMLFIQERREQVKRDNPDIAVTQQQKIMSEIWKTLGADEREAYRMRARDDQKRYKAEQADKPVAKKEDFYGNDER--GQSTELVCPLGRIGRIIKLDQDVQSVTKEATALIGKAMELFTSLMAKESFSVAQSQNRRLLKLQDITDIMHNQDQFYWIKDDF 1136
            ++ +SAWMLF+ + RE V++++P +AV   QKI+SE+WK LG  E   Y   A +D++R K E A   + K      +     G  T LV PL R+ + ++LD  V +++KE   L+ KA E+F +++A  ++++ +   R+ ++  D+ D +    + YW+KD+F
Sbjct:  182 ARARSAWMLFLADNREGVRKEHPGLAVGPMQKILSEMWKALGEAEVARYAKLAAEDKERVKNELAAAGLTKLPTKNSSSAAVAGGPTSLVLPLARVRKTVRLDPSVGNISKEGLLLVTKATEVFMAVLADHAWNIGRQTGRKSVRPCDVADFVFAAPEMYWLKDEF 347
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1483.3659.1 vs. uniprot
Match: A0A7S0T0M3_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0T0M3_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 2.540e-12
Identity = 55/166 (33.13%), Postives = 94/166 (56.63%), Query Frame = 3 
Query:  648 KPQSAWMLFIQERREQVKRDNPDIAVTQQQKIMSEIWKTLGADEREAYRMRARDDQKRYKAEQADKPVAKKEDFYGNDERGQSTELVCPLGRIGRIIKLDQDVQSVTKEATALIGKAMELFTSLMAKESFSVAQSQNRRLLKLQD--ITDIMHNQDQFYWIKDDFP 1139
            KP SAW  F  ERR Q+++ +   A   +Q  +SE +K L   E++ Y   A+ D+ RY  E   + V      Y  D+   + E++ P+GR+ +IIKLD +V+++ +EA A I KA + F  L++K+S   A+S+   +  ++D  I + +H  + F +++ DFP
Sbjct:   81 KPYSAWTYFSTERRLQIEKSSGTFAEIAKQ--ISEEYKKLSNIEKQKYIDLAKQDKLRYNKEI--EAVGSSISNYDKDKGLPTDEVIIPMGRVKKIIKLDPEVKALGREAVAAITKATDEFVVLLSKKSLLSAKSRGSTVKTIRDTDIINCIHMNELFEFLRLDFP 242
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1483.3659.1 vs. uniprot
Match: K0SB38_THAOC (HMG box domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SB38_THAOC)

HSP 1 Score: 78.2 bits (191), Expect = 4.120e-12
Identity = 55/169 (32.54%), Postives = 89/169 (52.66%), Query Frame = 3 
Query:  648 KPQSAWMLFIQERREQVKRDNPDIAVTQQQKIMSEIWKTLGADEREAYRMRARDDQKRYKAEQADK-------PVAKKEDFYGNDERGQSTELVCPLGRIGRIIKLDQDVQSVTKEATALIGKAMELFTSLMAKESFSVAQSQNRRLLKLQDITDIMHNQDQFYWIKDD 1133
            + ++A+ +F  E+R+ VK++NP   V    K + ++W  L A E+  Y   A +++ R  A  A +       P    E     DE      L  P+GRI +I KLD +V+ ++KEAT LI K++ELF   +  E  ++AQ  NRR L   DI  +   +++F ++K D
Sbjct:  157 RARTAYFIFADEKRDDVKKENPGGGVAVVAKAIGQLWSALEAPEKLKYENAAAEERARV-ARDAQRLKDAGLWPEKGAEVAQALDEDA----LAFPVGRIRKICKLDPEVKGMSKEATLLITKSVELFCHRLGMECVTMAQMSNRRKLLPDDIVQVASMKERFMFMKSD 320
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1483.3659.1 vs. uniprot
Match: A0A7S2TRR8_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TRR8_9EUKA)

HSP 1 Score: 65.1 bits (157), Expect = 3.840e-8
Identity = 50/167 (29.94%), Postives = 90/167 (53.89%), Query Frame = 3 
Query:  648 KPQSA---WMLFIQERREQVKRDNPDIAVTQQQKIMSEIWKTLGADEREAYRMRARDDQKRYKAEQADKPVAKKEDFYGNDERGQSTELVCPLGRIGRIIKLDQDVQSVTKEATALIGKAMELFTSLMAKESFSVAQSQNRRLLKLQDITDIMHNQDQFYWIKDDFP 1139
            KPQ A   + LF+ E R++V+ +   ++V    K +S+IW  L  +E++ Y  RA  D++R++ E+ +   A           G +TEL  P  +I RI++LD + +S +KE   LI K+ E F  L+A  +  VA+S  R+++K +D  + +    +  +++   P
Sbjct:   32 KPQRASTPYFLFLDEYRQKVQAEE-GMSV---HKKLSQIWNNLPPEEKKQYVDRAEVDKERFRKEKEEYEKAGGTTTQKRKREGPTTELSAP--KIRRIMQLDPETKSCSKEGLNLICKSTENFVGLLASRAQGVAKSAGRKIIKKEDFYNAILQYSELAFLQVPMP 192
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1483.3659.1 vs. uniprot
Match: A0A835I3M5_9MAGN (CBFD_NFYB_HMF domain-containing protein n=1 Tax=Coptis chinensis TaxID=261450 RepID=A0A835I3M5_9MAGN)

HSP 1 Score: 62.4 bits (150), Expect = 4.250e-8
Identity = 33/93 (35.48%), Postives = 53/93 (56.99%), Query Frame = 3 
Query:  876 NDERGQSTELVCPLGRIGRIIKLDQDVQSVTKEATALIGKAMELFTSLMAKESFSVAQSQNRRLLKLQDITD-IMHNQDQFYWIKDDFPLPTR 1151
            NDE  +      PLGR+ +I+KLDQD++ VT EA  LI  +  LF   +A++S  VA  + R+++KL  +T  +  +Q    ++ D  P+P  
Sbjct:   14 NDEETEILRPSFPLGRVKKIMKLDQDIKKVTSEALLLISLSTVLFLQFLAEKSSEVAVEKKRKIIKLDHLTSAVKRHQPTNDFLIDSLPVPNE 106
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1483.3659.1 vs. uniprot
Match: UPI001CF9AB8B (nuclear transcription factor Y subunit C-6 n=1 Tax=Mangifera indica TaxID=29780 RepID=UPI001CF9AB8B)

HSP 1 Score: 57.4 bits (137), Expect = 2.400e-6
Identity = 29/91 (31.87%), Postives = 52/91 (57.14%), Query Frame = 3 
Query:  882 ERGQSTELVCPLGRIGRIIKLDQDVQSVTKEATALIGKAMELFTSLMAKESFSVAQSQNRRLLKLQDI-TDIMHNQDQFYWIKDDFPLPTR 1151
            E  +++    P+GRI +I+KLD+D+  +T EA  L+  + ELF   +A++S  VA  + R+ +KL  + T +  +Q    ++ D  P P +
Sbjct:   10 ENTENSRPEFPIGRIKKIVKLDEDINKITSEAMFLVSCSTELFLQFLAEKSAEVAIEKKRKTIKLDHLRTAVKRHQPTSDFLLDSLPQPVQ 100
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1483.3659.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
D7G2P1_ECTSI6.530e-10395.29HMG box domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5KV94_9PHAE2.080e-10195.29HMG box domain-containing protein n=1 Tax=Ectocarp... [more]
A0A835ZK76_9STRA3.800e-2437.63Histone-like transcription factor (CBF/NF-Y) and a... [more]
A0A4D9D0Z2_9STRA1.620e-2342.44HMG box domain-containing protein n=2 Tax=Monodops... [more]
D8LIR0_ECTSI1.420e-2033.73HMG box domain-containing protein n=1 Tax=Ectocarp... [more]
A0A7S0T0M3_9STRA2.540e-1233.13Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
K0SB38_THAOC4.120e-1232.54HMG box domain-containing protein n=1 Tax=Thalassi... [more]
A0A7S2TRR8_9EUKA3.840e-829.94Hypothetical protein (Fragment) n=1 Tax=Lotharella... [more]
A0A835I3M5_9MAGN4.250e-835.48CBFD_NFYB_HMF domain-containing protein n=1 Tax=Co... [more]
UPI001CF9AB8B2.400e-631.87nuclear transcription factor Y subunit C-6 n=1 Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1483contigH-canaliculatus_F_contig1483:12908..18521 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.5
Seed ortholog evalue1.4e-20
Seed eggNOG ortholog4792.ETI34754
Preferred nameHMG20A
KEGG rclassRC02795
KEGG koko:K03004,ko:K03506,ko:K08066,ko:K11656,ko:K15502
KEGG ReactionR00375,R00376,R00377,R00378,R00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,ko03030,ko03410,ko03420,ko04612,ko05152,ko05166,map00230,map00240,map01100,map03020,map03030,map03410,map03420,map04612,map05152,map05166
KEGG ModuleM00182,M00263
GOsGO:0000122,GO:0000217,GO:0000228,GO:0000400,GO:0000785,GO:0000790,GO:0000981,GO:0002111,GO:0003674,GO:0003676,GO:0003677,GO:0003700,GO:0003824,GO:0003887,GO:0004407,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0006139,GO:0006259,GO:0006325,GO:0006338,GO:0006355,GO:0006357,GO:0006464,GO:0006476,GO:0006725,GO:0006807,GO:0006950,GO:0006996,GO:0007275,GO:0007399,GO:0007517,GO:0007519,GO:0007596,GO:0007599,GO:0008150,GO:0008152,GO:0008622,GO:0008623,GO:0009058,GO:0009059,GO:0009611,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0010720,GO:0010721,GO:0014706,GO:0016043,GO:0016569,GO:0016570,GO:0016575,GO:0016604,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016810,GO:0016811,GO:0018130,GO:0019213,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0022008,GO:0030154,GO:0031010,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031399,GO:0031400,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032991,GO:0033233,GO:0033234,GO:0033558,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0034728,GO:0035601,GO:0035914,GO:0036211,GO:0042060,GO:0042575,GO:0042766,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0045595,GO:0045596,GO:0045597,GO:0045664,GO:0045665,GO:0045666,GO:0045892,GO:0045934,GO:0046483,GO:0046982,GO:0046983,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050768,GO:0050769,GO:0050789,GO:0050793,GO:0050794,GO:0050817,GO:0050878,GO:0050896,GO:0051093,GO:0051094,GO:0051171,GO:0051172,GO:0051239,GO:0051240,GO:0051241,GO:0051246,GO:0051248,GO:0051252,GO:0051253,GO:0051276,GO:0051960,GO:0051961,GO:0051962,GO:0060255,GO:0060284,GO:0060537,GO:0060538,GO:0061061,GO:0061695,GO:0065007,GO:0065008,GO:0070013,GO:0070603,GO:0071704,GO:0071824,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0097159,GO:0098732,GO:0140096,GO:0140097,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1902494,GO:1902679,GO:1903320,GO:1903321,GO:1903506,GO:1903507,GO:1904949,GO:1990234,GO:2000026,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.Histone-like transcription factor (CBF/NF-Y) and archaeal histone
EggNOG OGs3QE8C@4776,COG5208@1,COG5648@1,KOG0381@2759,KOG1657@2759
EC2.7.7.7
COG Functional cat.K
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko01009,ko03000,ko03021,ko03032,ko03036,ko03400
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDPB3 class protein with histone-like transcription factor (NF-YC subunit) and high mobility group domains
Ec32 orthologEc-11_002940.1
Exons7
Model size1357
Cds size1122
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929226.7454174-UTR-H-canaliculatus_F_contig1483:12907..129391622929226.7454174-UTR-H-canaliculatus_F_contig1483:12907..12939Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1483 12908..12939 +
1696845725.5173137-UTR-H-canaliculatus_F_contig1483:12907..129391696845725.5173137-UTR-H-canaliculatus_F_contig1483:12907..12939Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1483 12908..12939 +
1622929226.8991587-UTR-H-canaliculatus_F_contig1483:18318..185211622929226.8991587-UTR-H-canaliculatus_F_contig1483:18318..18521Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1483 18319..18521 +
1696845725.6062844-UTR-H-canaliculatus_F_contig1483:18318..185211696845725.6062844-UTR-H-canaliculatus_F_contig1483:18318..18521Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1483 18319..18521 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929226.7656806-CDS-H-canaliculatus_F_contig1483:12939..135271622929226.7656806-CDS-H-canaliculatus_F_contig1483:12939..13527Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1483 12940..13527 +
1696845725.5289176-CDS-H-canaliculatus_F_contig1483:12939..135271696845725.5289176-CDS-H-canaliculatus_F_contig1483:12939..13527Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1483 12940..13527 +
1622929226.7839713-CDS-H-canaliculatus_F_contig1483:14501..146211622929226.7839713-CDS-H-canaliculatus_F_contig1483:14501..14621Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1483 14502..14621 +
1696845725.5386775-CDS-H-canaliculatus_F_contig1483:14501..146211696845725.5386775-CDS-H-canaliculatus_F_contig1483:14501..14621Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1483 14502..14621 +
1622929226.8053606-CDS-H-canaliculatus_F_contig1483:15860..159651622929226.8053606-CDS-H-canaliculatus_F_contig1483:15860..15965Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1483 15861..15965 +
1696845725.5502217-CDS-H-canaliculatus_F_contig1483:15860..159651696845725.5502217-CDS-H-canaliculatus_F_contig1483:15860..15965Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1483 15861..15965 +
1622929226.8228562-CDS-H-canaliculatus_F_contig1483:16582..166551622929226.8228562-CDS-H-canaliculatus_F_contig1483:16582..16655Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1483 16583..16655 +
1696845725.559666-CDS-H-canaliculatus_F_contig1483:16582..166551696845725.559666-CDS-H-canaliculatus_F_contig1483:16582..16655Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1483 16583..16655 +
1622929226.842748-CDS-H-canaliculatus_F_contig1483:17276..173591622929226.842748-CDS-H-canaliculatus_F_contig1483:17276..17359Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1483 17277..17359 +
1696845725.5692363-CDS-H-canaliculatus_F_contig1483:17276..173591696845725.5692363-CDS-H-canaliculatus_F_contig1483:17276..17359Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1483 17277..17359 +
1622929226.8650427-CDS-H-canaliculatus_F_contig1483:17736..178411622929226.8650427-CDS-H-canaliculatus_F_contig1483:17736..17841Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1483 17737..17841 +
1696845725.5795014-CDS-H-canaliculatus_F_contig1483:17736..178411696845725.5795014-CDS-H-canaliculatus_F_contig1483:17736..17841Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1483 17737..17841 +
1622929226.8819456-CDS-H-canaliculatus_F_contig1483:18270..183181622929226.8819456-CDS-H-canaliculatus_F_contig1483:18270..18318Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1483 18271..18318 +
1696845725.5883727-CDS-H-canaliculatus_F_contig1483:18270..183181696845725.5883727-CDS-H-canaliculatus_F_contig1483:18270..18318Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1483 18271..18318 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1483.3659.1prot_H-canaliculatus_F_contig1483.3659.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1483 12940..18318 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1483.3659.1

>prot_H-canaliculatus_F_contig1483.3659.1 ID=prot_H-canaliculatus_F_contig1483.3659.1|Name=mRNA_H-canaliculatus_F_contig1483.3659.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=374bp
MPANPLTAAATAFAAAEGGYGGDGGGGGGVGTPLPSGGAAAAAAGVGATT
ATAVAAQPPAPAAPAPAAPAAPPMIALPPMSPSVAAAAAAAPTVANPSAP
STAAPPQGGPPASGLTPSTPGSTGNGGGVEGVTTGATNGSPPVAAAVAAP
VAGDAATAAGLAAAAAGGGAAAVAGGGSPNGVVAATTGGSSSGKKRSSAS
AGGQSKPQSAWMLFIQERREQVKRDNPDIAVTQQQKIMSEIWKTLGADER
EAYRMRARDDQKRYKAEQADKPVAKKEDFYGNDERGQSTELVCPLGRIGR
IIKLDQDVQSVTKEATALIGKAMELFTSLMAKESFSVAQSQNRRLLKLQD
ITDIMHNQDQFYWIKDDFPLPTR*
back to top

mRNA from alignment at H-canaliculatus_F_contig1483:12908..18521+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1483.3659.1 ID=mRNA_H-canaliculatus_F_contig1483.3659.1|Name=mRNA_H-canaliculatus_F_contig1483.3659.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=5614bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1483:12908..18521+ (Hapterophycus canaliculatus Oshoro5f female)
CCGCCGCCGCCTCCACCCCTATCCCGGCACCGATGCCCGCCAACCCCTTG
ACGGCAGCAGCAACGGCCTTTGCGGCGGCGGAAGGGGGCTACGGGGGGGA
TGGTGGGGGTGGAGGTGGCGTAGGCACTCCTCTGCCGAGCGGAGGCGCAG
CAGCAGCAGCAGCAGGAGTAGGAGCGACGACGGCGACGGCGGTAGCAGCA
CAACCACCAGCACCGGCAGCCCCAGCACCAGCGGCACCAGCAGCACCACC
GATGATTGCGTTGCCGCCGATGTCTCCTTCGGTGGCGGCAGCGGCGGCGG
CGGCACCAACGGTCGCCAACCCGTCCGCCCCGAGCACCGCCGCGCCGCCA
CAGGGCGGTCCTCCGGCGTCTGGCCTCACCCCGTCAACCCCCGGCAGCAC
CGGTAATGGTGGTGGAGTAGAAGGGGTGACGACAGGGGCTACCAACGGAT
CGCCGCCGGTGGCGGCGGCGGTGGCGGCCCCCGTGGCCGGGGATGCTGCA
ACCGCAGCGGGATTAGCGGCGGCAGCGGCCGGAGGGGGGGCGGCTGCGGT
GGCGGGCGGCGGTAGCCCAAACGGTGTCGTGGCGGCAACGACGGGAGGTT
CATCATCGGGCAAGAAGCGGGTGAGAGGCGGACGGGAGGGGGAGCAGGAG
GGGGACGGAGAGGGCAAGGGGTGTGGGGAAGGAGGGAGGCGGGGGGGGGA
GTGGGAGAGAGCGGGGGGGGGGCGAGATATTTGTGTTCACGAGCCTTGCG
TGCGGACGACCAAGAACAATCGTCTCGGGCCAAACGCAGCACGAGAACGC
GGTGTCTTACCTGGTAGTCAAACCTGCGGAGACGACTCAAGTTTCGAACC
GAGAAAGTTGCCGAGTCGCACAATGCCGTGCTTCTCTGTGTGATAAGCAG
GCTTAACTTGAAGTTTTTGCGCAACGTTGAGGAATGCTGGCCCTGCCCTC
AATTTTGTCGGTGCAGGCACCGGTTTGCGGCAGTTCGTCTTCGATTTTGC
TGTTTCTGGTGACCGCATCGTCCTCCCTGCGCGGAACTGTTCGTCTTTAC
CTTGATATTTTTGCCCCACCGACGACGGTCACTGTTGTCCGCGGCTGGCT
GTTGATCTCCTTGACCCACGAGCTAGGGACTGTTGAGATCCCTACCCTTC
ACACACCCATACTCCTTGGCCTAGCCGAGAACGATCGAAAACGCGGCTCT
TTGTTTCTCGAACGGATTCCGGCGGGATTTCTGGCGATTGTGGTGATTGC
GGTGGGACGTCGTCTGGCGTGCGCGACGCCTGTGCAGTTCTCGTCGGGTC
CCCGCAGACTGCAGACTGCTACGTCGCGTGAAACAGTCGGCGCGCGAACG
CTATGGTGTGGTCGATGCTCCCGCCTTGCGTTCGCGACGGCCTCCGACAG
AGTGCGACACGAACGATGCCGCGCGCCAATCTCGACGCGAGTAAACGGCA
CGAGAAGAGCGCCGCAAGGCCGTGCCGTGCCTGAGCATCCAACGAATGTC
TCCGCTGACGCGCAATCACTCGCGCGTTGTGGACGCGAAACCTGGTGTGA
CTGCTGGATCGGCCTCGGTGGCGACGTGACGGGGCGCGAATCAGTCGTCG
GCGTCGGCGGGGGGACAATCGAAGCCGCAGTCGGCGTGGATGCTCTTCAT
CCAGGAGCGACGCGAGCAGGTCAAGCGCGACAACCCGGACATCGCCGTTA
CACAGCAGCAAAAGGTGAGTGGAAACCCCGGAAAAGGGGTAGGGCATCGG
GAGACGCGAGGGTGTTCCGTTGGTTGTGTCGCCCACCGTCTACAGATCCT
GTGGAATATGCGGCTTCTTCGTTTGTCTAGTCGATTCTCCAGGCATTGCA
GGCTCGCGGGTACAGGTGGGCGAGGCCGCTGCCTGAGTAGCAGCAGAGGT
GGGAGGGTGGCGGAACGCTCGAGGGGGCAGGAAGCGGGTAAACGCGCCCT
AGTCTCGGTGAACCGGGTGTTGATAATTGGAACCGTCGGATCACACCCGT
CAATTTTTACGGGCCGTTCTTTCCTGCTCCGACTGCTGGGGTCAATCACC
CCGACTATCTTCACCTCGAAACCACGTGTCACCGTGCAGTATGCACGATT
CGCATCTTCGAGGCGCACTCTGTTTCCATCGTTGTGCTAGCGCCGTGTAC
TCTTTGCCTTGCGGGGAGGGGAGGGGGAGGGGCCCAAAGAGCTCAATTCG
TAGCGAAATTTCTCTCTTTTTTTCCCTTCCCCCCGTCGCTTTCGTGACGC
CGTGGGAAGCCTCATCGATTTCGAAGTGCTCGGAGCCAGCTGACGACCGA
AGTCAAATCATTGCTCGGTCTTTTCCATTAAGACCCACGTGAACGCGCGA
ATCCAGCATCGTGACAAGCTCTCATCGTGCCAGTGGATGTGCGATCTTCA
TTTTCCGCCCTGTCGACTTTAGCTTCCTCGCCCTGCATTGCTTGAACCGG
TCGCGGGGGGGAATCATCACCGAGATCCGACGGTACTGAAAAGAGGCAGG
CCGATTTGGCTCTCACGGAACGAAGCGAAACTGGTCCACACGAACCGAAA
CAAAACGACGACGCGAAACGATGAAAAACAGCCCGAAACGGCAGGAGGCG
AAACAACACGAACGACATGTGTTCAAACATCGTTTCATCGAAGCGTGCTC
GGCTCGTCGAAAAACCCACTGGAAGCAACAAGTGCTTGTAGGACTTCTCC
ATACCTCGGTGGCGTGATATGCCTTTTTTTGTGCTCATCGCTGGCGGCGG
CGTTTCGCATCGTTTGTGTCTCCCGTGTTCCCTTCCCCGCTGTGCCCTGC
CTCAACCTGCCCCATGCACGCTGCTCGTCGCACGAACCGATCGGGCAACT
CTCACGTACGAAACGGGCGGACGACTGGACAAATCGGAAAACTCACCTAA
AAAAAACCGAACGGTGACCAAAACGATAAAACGGGACCGAAACGTGACCA
AAGATAATGAGCGAAATCTGGAAGACACTGGGCGCGGACGAGCGAGAGGC
CTACCGCATGCGGGCGAGAGACGATCAGAAGCGATACAAGGCTGAGCAGG
CGGACAAGGTGGGCAGCTTGCTTTTGCGCATCGGAACTTCCACGCGTTGT
TGGTGTTGGTGGTGTTGGTGTTGGTGTTGTCGTCGTCGCCGTCGCCATCG
TCGCCGTTGTCGTTGTGGTTGATGTCATTGCTGCTGCTACTGCTGCTGTT
GTCGTTTTGGTCGTCGACGAGGTAGTTCCTGTTTCTGTTAGTGTCGCCGA
CACACTGGCCTCGGTTCTGTTCTCGGCGACAACGCTCGTCAGGGCGGGCT
CGCGAAGCTAGCCGCGACAGCGAACGTCTCGTTCCGAACCGGACACGCAA
ACCTTTGTCTCTGCGGGAGTGTGTTCTGGTCGTACATGACGACCGAAAGC
GCCGGCTTCGTTCTTGCCTGCTGCCATCGCCGCCGACTCTGTAGGCTCAC
GTTACAGGATCCATCCTTTGTTCTACTCAAGCGCCCGCAGTTGATGTCTG
CGTTCGCATCACGGCTACCCTGATCGCAGGTGACCCGCGCTTGCAAACGT
GTGCGCACGCTGTCTCTCACGCCATTTAAAAACCACCCCGGTGCTAACTT
CATCCGCCCGTCCGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTG
CCTGATTGTCGACCGTCTCATGCAGCCCGTCGCGAAAAAAGAAGATTTTT
ACGGGAACGACGAGAGGGGCCAGTCTACAGAGCTGGTTTGCCCGTTGGGT
GAGTCGGTTTTGAAAGCCCTTCTGATGGAAGGGGCGGGGTGGAGGAAGAG
AGACAAAAATCGTACAAGTACAAGTACTGCGTGAATCTGCGTGTTGCACA
AATCCACAAGGCTGCGATGTTGCGCTTTAATTGTAATCGCCAGCTTGCTT
TGTCCGTTGCGACAGACATTTCGTGCACGATCTGGTGTTTTCGGCTCTTT
AGCTGTTGGGCGGTCTCCGCCTCTTTCTCGGTCCGCATGGCCTCGTCTCC
TTTTAGAAACTTTCGTCTCGGAGCGTCCAAAGCTCGCCCCGGGAAGGGTC
GCCAAGCGATGCCTCGCCACAGCGAGGACTCGAGCGGGGTTTGTGTAGCA
CACGGAGGCAGCAGCGAGCACCTTGAAGCGAAGTCGATGGGTATGGCATG
GTGCAAACAACAAACAACGCTGCTAGGTGAAACATGGGGATACCATTGTT
GTAGCGCTGTATACTGCAGTAACAGGCGCATGTAGATGTGTCTTCAGGTC
CCTCTCCGTTGTTCGATTCACCAGCACAGCCAAAAACTGTTTTCCACAAC
TCTTACTTCCTGTCCTCCCCCTCCCTACAACAACGCACGAATCCGCCTCC
CCTGTCTGTGAAACCCAAGGCCGGATCGGGAGGATAATCAAACTAGACCA
GGATGTACAGAGCGTCACCAAAGAAGCAACGGCGCTCATCGGAAAGGCCA
TGGTAAGCAATCAAGCAGCCTCTCGCAAGACAAGCCCGGTAGGATAAAAA
TACGCCTTCTGTATCGTACACGAACGGTCGGGGCCCCTTCTTGGCGAGCC
CAGGCGAAGCATAGCTGTTTTTAAAGAAAACATAACAACACCGTTAGAAC
ACCTCCTGAGGTACGTCGTGTGAGGCGTACCCCGAGGCTTCTGTTGAGTT
CAAAACAGTGAGGGTTCATTGATGGGGACAAAAGCATCAACTTTTTGTCG
TGCGCAACTCTTCTGTCTTGTTGGCCTTCCGATGTTCCGTCCGCCGTTCA
CGTCCCGCGGACTTTTTCTTTACTTCTTTCCCTCACGCGGGCTCACTTTT
TTGTTTGTTGGTGCCCACGTTTCGCGCAGGAGCTTTTCACCTCGCTCATG
GCTAAAGAATCGTTTTCTGTGGCGCAAAGCCAAAACAGAAGACTGCTCAA
GCTGCAGGACATCACGGACATCATGCACAACCAGGTGCGCCTGATTGCGA
TACCTGCCGTGCTACTACAAGCCCGTGGTAAATAACCCGGGCGGGTTTTT
TTCGCGAAACGGCCGCTTCCCTGTCCTGGCATGGGCGTCACGCCGTGCGT
GAAACGAGAGCCAACCATGGAGCTAAACCTTCGCCTACCGCATCCTTTTG
TGTTGTTCCCCCTTGCAAGTGCCCTTCTCTTGATGCACTGGGTTCCCGTC
CTTCTTCTAATTTTCCTGCTGCTCTCTCCCCCTTTGTTGTGATCTTGCCG
GGTGAACACATCTCGTCAATTTATTTCAACGTGCACGAACCGATCGCTCT
CTGAAATGTATCTACACCCCTGCCGGGTATTTTCTTTTCCTTTTTTCTGA
CTACATGAGACCATCGATGGTGTTTACGTATTTCCCCGCCGCATTTTCCC
GAAACGAAAACAGGACCAATTCTACTGGATCAAGGACGACTTCCCGCTGC
CTACGCGGTGATTGGAAACCTATCATTGTTCAGGTTTATCGCTCTCTTTC
TGTTTCCTAGCGGGAGTTGGAGGTTCGAGCCTCGTAGAGAGAAGCAGGCA
GGCAGCGAGTACGTCTTCGGTCTCGACGCATGTACAGCAACCCCTGCACG
GATCCGATGTTTGAGCCCTTCGAGAAAAAGGAAGAGAGGTGGGGGCGGGG
GGGGGGGGGGGGGG
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1483:12908..18521+

>mRNA_H-canaliculatus_F_contig1483.3659.1 ID=mRNA_H-canaliculatus_F_contig1483.3659.1|Name=mRNA_H-canaliculatus_F_contig1483.3659.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2244bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1483:12908..18521+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCCCGCCAACCCCTTGACGGCAGCAGCAACGGCCTTTGCGGCGGCGGA
AGGGGGCTACGGGGGGGATGGTGGGGGTGGAGGTGGCGTAGGCACTCCTC
TGCCGAGCGGAGGCGCAGCAGCAGCAGCAGCAGGAGTAGGAGCGACGACG
GCGACGGCGGTAGCAGCACAACCACCAGCACCGGCAGCCCCAGCACCAGC
GGCACCAGCAGCACCACCGATGATTGCGTTGCCGCCGATGTCTCCTTCGG
TGGCGGCAGCGGCGGCGGCGGCACCAACGGTCGCCAACCCGTCCGCCCCG
AGCACCGCCGCGCCGCCACAGGGCGGTCCTCCGGCGTCTGGCCTCACCCC
GTCAACCCCCGGCAGCACCGGTAATGGTGGTGGAGTAGAAGGGGTGACGA
CAGGGGCTACCAACGGATCGCCGCCGGTGGCGGCGGCGGTGGCGGCCCCC
GTGGCCGGGGATGCTGCAACCGCAGCGGGATTAGCGGCGGCAGCGGCCGG
AGGGGGGGCGGCTGCGGTGGCGGGCGGCGGTAGCCCAAACGGTGTCGTGG
CGGCAACGACGGGAGGTTCATCATCGGGCAAGAAGCGGATGCCCGCCAAC
CCCTTGACGGCAGCAGCAACGGCCTTTGCGGCGGCGGAAGGGGGCTACGG
GGGGGATGGTGGGGGTGGAGGTGGCGTAGGCACTCCTCTGCCGAGCGGAG
GCGCAGCAGCAGCAGCAGCAGGAGTAGGAGCGACGACGGCGACGGCGGTA
GCAGCACAACCACCAGCACCGGCAGCCCCAGCACCAGCGGCACCAGCAGC
ACCACCGATGATTGCGTTGCCGCCGATGTCTCCTTCGGTGGCGGCAGCGG
CGGCGGCGGCACCAACGGTCGCCAACCCGTCCGCCCCGAGCACCGCCGCG
CCGCCACAGGGCGGTCCTCCGGCGTCTGGCCTCACCCCGTCAACCCCCGG
CAGCACCGGTAATGGTGGTGGAGTAGAAGGGGTGACGACAGGGGCTACCA
ACGGATCGCCGCCGGTGGCGGCGGCGGTGGCGGCCCCCGTGGCCGGGGAT
GCTGCAACCGCAGCGGGATTAGCGGCGGCAGCGGCCGGAGGGGGGGCGGC
TGCGGTGGCGGGCGGCGGTAGCCCAAACGGTGTCGTGGCGGCAACGACGG
GAGGTTCATCATCGGGCAAGAAGCGGTCGTCGGCGTCGGCGGGGGGACAA
TCGAAGCCGCAGTCGGCGTGGATGCTCTTCATCCAGGAGCGACGCGAGCA
GGTCAAGCGCGACAACCCGGACATCGCCGTTACACAGCAGCAAAAGTCGT
CGGCGTCGGCGGGGGGACAATCGAAGCCGCAGTCGGCGTGGATGCTCTTC
ATCCAGGAGCGACGCGAGCAGGTCAAGCGCGACAACCCGGACATCGCCGT
TACACAGCAGCAAAAGATAATGAGCGAAATCTGGAAGACACTGGGCGCGG
ACGAGCGAGAGGCCTACCGCATGCGGGCGAGAGACGATCAGAAGCGATAC
AAGGCTGAGCAGGCGGACAAGATAATGAGCGAAATCTGGAAGACACTGGG
CGCGGACGAGCGAGAGGCCTACCGCATGCGGGCGAGAGACGATCAGAAGC
GATACAAGGCTGAGCAGGCGGACAAGCCCGTCGCGAAAAAAGAAGATTTT
TACGGGAACGACGAGAGGGGCCAGTCTACAGAGCTGGTTTGCCCGTTGGC
CCGTCGCGAAAAAAGAAGATTTTTACGGGAACGACGAGAGGGGCCAGTCT
ACAGAGCTGGTTTGCCCGTTGGGCCGGATCGGGAGGATAATCAAACTAGA
CCAGGATGTACAGAGCGTCACCAAAGAAGCAACGGCGCTCATCGGAAAGG
CCATGGCCGGATCGGGAGGATAATCAAACTAGACCAGGATGTACAGAGCG
TCACCAAAGAAGCAACGGCGCTCATCGGAAAGGCCATGGAGCTTTTCACC
TCGCTCATGGCTAAAGAATCGTTTTCTGTGGCGCAAAGCCAAAACAGAAG
ACTGCTCAAGCTGCAGGACATCACGGACATCATGCACAACCAGGAGCTTT
TCACCTCGCTCATGGCTAAAGAATCGTTTTCTGTGGCGCAAAGCCAAAAC
AGAAGACTGCTCAAGCTGCAGGACATCACGGACATCATGCACAACCAGGA
CCAATTCTACTGGATCAAGGACGACTTCCCGCTGCCTACGCGGTGAGACC
AATTCTACTGGATCAAGGACGACTTCCCGCTGCCTACGCGGTGA
back to top