mRNA_H-canaliculatus_F_contig14829.3655.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14829.3655.1
Unique NamemRNA_H-canaliculatus_F_contig14829.3655.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig14829.3655.1 vs. uniprot
Match: D8LR70_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LR70_ECTSI)

HSP 1 Score: 286 bits (733), Expect = 3.990e-92
Identity = 181/210 (86.19%), Postives = 184/210 (87.62%), Query Frame = 1 
Query:    7 REKSGLEVPDTVCAAALSGWGLLATTVSRSWVATRMTKQHLRVFRELLSSPDMGVRMEAGENLALLHESRIILGLVGAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXD-------GAGEMEAMDLTVLWEEVVEEIKGFITDSSKKLSRETKKQQRRTFRQLFATIGENEPPEEVVSLQNGSLTVADWAHIKQLNALRSCLQSGFQVR 615
            R   GLEV D VCAAALSGWGLLATTVSRSWVATRMTKQHLRVFRELLSSPDM VR+EAGENLALLHESRIILGLVG          XXXXXXXXXXXXXXXXXXXXXX        GA EMEAMDLTVLWEEVVEE+KGFITDSSKKLSRETKKQQRRTFRQLFATIGENEPPEEVVSLQNGSLTVADWAHIKQLNALRSCLQSGFQ +
Sbjct:  205 RTSDGLEVTDKVCAAALSGWGLLATTVSRSWVATRMTKQHLRVFRELLSSPDMDVRIEAGENLALLHESRIILGLVGGGEGGSADWSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAAEMEAMDLTVLWEEVVEEMKGFITDSSKKLSRETKKQQRRTFRQLFATIGENEPPEEVVSLQNGSLTVADWAHIKQLNALRSCLQSGFQTQ 414
[Close]
BLAST of mRNA_H-canaliculatus_F_contig14829.3655.1 vs. uniprot
Match: A0A7S2XZE4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZE4_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 6.910e-21
Identity = 64/203 (31.53%), Postives = 103/203 (50.74%), Query Frame = 1 
Query:    7 REKSGLEVPDTVCAAALSGWGLLATTVSRSWVATRMTKQHLRVFRELLSSPDMGVRMEAGENLALLHESRIILGLVGAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGAGEMEAMDLTVLWEEVVEEIKGFITDSSKKLSRETKKQQRRTFRQLFATIGENEPPEEVVSLQNGSLTVADWAHIKQLNALRSCLQSGFQVR 615
            R   G+ V D V  AALS WGLLATT++  +V      + LR     L   DM VRM AGEN AL+HE ++                                      D  G  E      +W+E++  ++    +SSK++S++ +K+ R TFR+++A+I E++ P E + +  G++ +  WAHI Q++ALR+ ++ GFQ++
Sbjct:  209 RRSPGVMVTDEVIPAALSCWGLLATTLTTEFVHQTAGPRVLRTLLAFLEHGDMSVRMAAGENAALIHECKM----------KKVHELEALAEEKQLDEAEAEELIHQADDEQGIAE------VWDEIIARMEDLRGESSKRISKKNRKEVRATFREIYASIVEDDNPSEQLQVVGGTIRLNTWAHIVQVDALRNTMRGGFQIQ 395
[Close]
BLAST of mRNA_H-canaliculatus_F_contig14829.3655.1 vs. uniprot
Match: A0A835YVX4_9STRA (Interferon-related developmental regulator-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVX4_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 2.620e-20
Identity = 68/203 (33.50%), Postives = 99/203 (48.77%), Query Frame = 1 
Query:    7 REKSGLEVPDTVCAAALSGWGLLATTVSRSWVATRMTKQHLRVFRELLSS-PDMGVRMEAGENLALLHESRIILGLVGAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGAGEMEAMDLTVLWEEVVEEIKGFITDSSKKLSRETKKQQRRTFRQLFATIGENEPPE-EVVSLQNGSLTVADWAHIKQLNALRSCLQSGFQ 609
            R   G EV D V AAAL GW LLAT   R W+     +  L   R+LL+    + VR  AGE  AL+           A+                              + A   E  D+  LW+E+ + ++G+ T++SK++S++TKK QRRTFR L A + E  PP  + +SLQ+ ++ +  WA + +L ALR+CL  G Q
Sbjct:  232 RTSEGTEVTDDVAAAALRGWCLLATAGPREWLGGPALEALLPAVRDLLAGGASLDVREAAGEAAALMXXXXXXXXXXQAEAGI---------------------------EEAAAEEYSDVETLWQEIGDLMQGYSTETSKRMSKDTKKSQRRTFRDLHAAVVEGAPPPWQELSLQSCAVEITTWAELVRLEALRACLHGGLQ 407
[Close]
BLAST of mRNA_H-canaliculatus_F_contig14829.3655.1 vs. uniprot
Match: A0A7S3Q2Q3_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q2Q3_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 9.760e-20
Identity = 65/212 (30.66%), Postives = 106/212 (50.00%), Query Frame = 1 
Query:    4 AREKSGLEVPDTVCAAALSGWGLLATTVSRSWVATRMTKQH--------LRVFRELLSSPDMGVRMEAGENLALLHESRIILGLVGAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGAGEMEAMDLTVLWEEVVEEIKGFITDSSKKLSRETKKQQRRTFRQLFATIGENEPPEEVVSLQNGSLTVADWAHIKQLNALRSCLQSGFQVR 615
            A E  G  VP  + A AL  W LL+TT+  +++A               L +  + L+S ++ +R  AGE +AL+HE+R+ LG+   +                                 G  +  +  V+ +EV + +     +S K +S++ KK+QR+TFR+  +TI ++E P EVV+ + G +T+ +W  I QLN +R CLQSGFQV+
Sbjct:  226 ATEFRGEVVPPILRATALDCWALLSTTIHNAYLAGNDIPGSGDGRGLVILPLLNDCLNSSNLDLRCSAGECVALIHEARLDLGIDEDEGENASERRYRR----------------------GSWDGSEWEVIMDEVKQRVAELSVESGKHMSKKAKKEQRQTFREFMSTIVDDESPNEVVAFRGGQMTLNNWREIIQLNFIRHCLQSGFQVQ 415
[Close]
BLAST of mRNA_H-canaliculatus_F_contig14829.3655.1 vs. uniprot
Match: A0A7S4J5R0_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J5R0_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 3.490e-19
Identity = 65/208 (31.25%), Postives = 102/208 (49.04%), Query Frame = 1 
Query:   19 GLEVPDTVCAAALSGWGLLATTVSRSWVA---------TRMTKQHLRVFRELLSSPDMGVRMEAGENLALLHESRIILGLVGAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGAGEMEAMDLTVLWEEVVEEIKGFITDSSKKLSRETKKQQRRTFRQLFATIGENEPPEEVVSLQNGSLTVADWAHIKQLNALRSCLQSGFQVR 615
            G EV  T+ A AL  W LL+TTV+ +++A         +      L + +E L+   + +R   GE +AL+HE+R+ LG+   +                                 G  +  +  VL +EV + +     +S   +S++ KK+QR TFR+  ATI ++E P E+VS + G LT+  W  I QLN +R CLQSGFQ++
Sbjct:  232 GEEVNPTLRAIALDSWALLSTTVADAYIAGDELGGVDDSGRGIIILPILQECLNHTSVELRSAGGECVALIHEARLNLGINDDEGENATERRYRR----------------------GSWDGTEWEVLMDEVKQRVAELSVESGHHMSKKAKKEQRATFREFMATIVDDESPSEIVSFRGGQLTLKSWREIIQLNFIRHCLQSGFQIQ 417
[Close]
BLAST of mRNA_H-canaliculatus_F_contig14829.3655.1 vs. uniprot
Match: B8CFC4_THAPS (IFRD domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CFC4_THAPS)

HSP 1 Score: 94.0 bits (232), Expect = 9.370e-19
Identity = 63/208 (30.29%), Postives = 101/208 (48.56%), Query Frame = 1 
Query:   19 GLEVPDTVCAAALSGWGLLATTVSRSWVATRMTKQHLRVFRELLSSP---------DMGVRMEAGENLALLHESRIILGLVGAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGAGEMEAMDLTVLWEEVVEEIKGFITDSSKKLSRETKKQQRRTFRQLFATIGENEPPEEVVSLQNGSLTVADWAHIKQLNALRSCLQSGFQVR 615
            G +V   + A AL  W LL+TT+  + +A    +  + + R LL  P         D+G+R  AGE +A++HESR+ LG+   +                                 G  +  +  +L +E+ + +     +S   +S+++KK+QR TFR    TI ++E PEEVV+ + G L +  W  I QLN +R CLQSGFQ++
Sbjct:  251 GEKVSPLLRATALDCWALLSTTLHDAHIAAGDAEDTVALGRGLLLLPLLANCLESNDVGLRSSAGELVAMIHESRLNLGMDEGEAENATERRFRR----------------------GSWDGSEWEILMDEIKQRVAELSVESGHHMSKKSKKEQRATFRDFMNTIVDDESPEEVVNFRGGKLRITSWKEIIQLNFVRHCLQSGFQIQ 436
[Close]
BLAST of mRNA_H-canaliculatus_F_contig14829.3655.1 vs. uniprot
Match: A0A7S1YWK5_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YWK5_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 2.010e-18
Identity = 62/206 (30.10%), Postives = 104/206 (50.49%), Query Frame = 1 
Query:   19 GLEVPDTVCAAALSGWGLLATTVSRSWVATRMTKQHLR-------VFRELLSSPDMGVRMEAGENLALLHESRIILGLVGAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGAGEMEAMDLTVLWEEVVEEIKGFITDSSKKLSRETKKQQRRTFRQLFATIGENEPPEEVVSLQNGSLTVADWAHIKQLNALRSCLQSGFQVR 615
            G +V   + A AL  W LL++TV+ +++A    ++ L        +    L+S +M +R  AGE +AL+HESR+ LG+   +                                 G  +  +  VL +EV + +     +S + +S++ KK+QR TFR   ATI ++EPP EVV+ + G++T+  W  I ++N +R CLQ GFQ++
Sbjct:   80 GEDVSPCLRAIALDCWALLSSTVADAYLAGDEMEEDLGRGLVILPLLSTCLNSSNMELRCAAGECVALIHESRLNLGIDEDEGENASERRFRR----------------------GSWDGSEWEVLMDEVKQRVAELSVESGRHMSKKAKKEQRATFRDFMATIVDDEPPVEVVNFRGGTVTLRTWREIIEINFVRHCLQGGFQIQ 263
[Close]
BLAST of mRNA_H-canaliculatus_F_contig14829.3655.1 vs. uniprot
Match: A0A7S2H1J3_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2H1J3_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 4.420e-18
Identity = 63/209 (30.14%), Postives = 101/209 (48.33%), Query Frame = 1 
Query:   19 GLEVPDTVCAAALSGWGLLATTVSRSWVATRMTKQH----------LRVFRELLSSPDMGVRMEAGENLALLHESRIILGLVGAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGAGEMEAMDLTVLWEEVVEEIKGFITDSSKKLSRETKKQQRRTFRQLFATIGENEPPEEVVSLQNGSLTVADWAHIKQLNALRSCLQSGFQVR 615
            G +V  T+ A AL  W LL+TTV  +++A                 L +  + L+  ++ +R  AGE +AL+HESR+ LG+   +                                 G  +  +  VL +EV + +     +S + +S++ KK+QR TFR   ATI ++EPP EVV+ + G+L +  W  I Q+N +R CLQ GFQ++
Sbjct:  244 GEDVCPTLRAIALDCWALLSTTVDDAYIAGDELGSETGENGRGVVILPLLSQCLNESNVELRCAAGECVALIHESRLNLGIDDDEGENASERRFRR----------------------GSWDGSEWEVLMDEVKQRVAELSVESGRHMSKKAKKEQRATFRDFMATIVDDEPPVEVVNFRGGTLNLKSWREIVQINFVRHCLQGGFQIQ 430
[Close]
BLAST of mRNA_H-canaliculatus_F_contig14829.3655.1 vs. uniprot
Match: A0A7S0PVU5_9STRA (Hypothetical protein n=1 Tax=Asterionellopsis glacialis TaxID=33640 RepID=A0A7S0PVU5_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 6.050e-18
Identity = 59/196 (30.10%), Postives = 96/196 (48.98%), Query Frame = 1 
Query:   46 AAALSGWGLLATTVSRSWVA------TRMTKQHLRVFRELLSSPDMGVRMEAGENLALLHESRIILGLVGAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGAGEMEAMDLTVLWEEVVEEIKGFITDSSKKLSRETKKQQRRTFRQLFATIGENEPPEEVVSLQNGSLTVADWAHIKQLNALRSCLQSGFQVR 615
            A AL  W LL+TT+  +++A      T    Q L +    L    + +R  AGE +AL+HESR+ LG+                                     G  +  +  V+ +EV + +     +S + +S++ KK+QR TFR+  ATI ++EPP+EV++ + G+L +  W  + QLN +R CLQ GFQ++
Sbjct:  182 ATALDCWALLSTTIHDAFIAGDDDFQTGRGLQILPLLSNCLDHTSVELRSAAGECVALIHESRLKLGVEKEDCDNASDRRYRR----------------------GSWDGSEWEVIMDEVKQRVAELSVESGRHMSKKAKKEQRATFREFMATIVDDEPPKEVITFRGGTLELNSWKEVVQLNFIRHCLQGGFQIQ 355
[Close]
BLAST of mRNA_H-canaliculatus_F_contig14829.3655.1 vs. uniprot
Match: A0A7S2XRI7_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XRI7_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 1.730e-16
Identity = 61/198 (30.81%), Postives = 95/198 (47.98%), Query Frame = 1 
Query:   31 PDTVCAAALSGWGLLATTVSRSWVATRMTKQH-----LRVFRELLSSPDMGVRMEAGENLALLHESRIILGLVGAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGAGEMEAMDLTVLWEEVVEEIKGFITDSSKKLSRETKKQQRRTFRQLFATIGENEPPEEVVSLQNGSLTVADWAHIKQLNALRSCLQSGFQ 609
            P T+ A AL  W LL+TT+  + +A            L + ++ L+   + +R  AGE +AL+HESR+ LG+V                                    G  +  +  V+ +EV + +     +S   +S++ KK+QR TFR+  ATI  +E P E VS++ GS+T+  W  + QLN +R CLQ GFQ
Sbjct:  156 PATLRATALDCWALLSTTLHDATLAGNSEGVGRGVVLLPLLQQCLNHTSVDLRSAAGECVALIHESRLNLGIVEDGNESTPTNTTERRFRR------------------GSWDGSEWEVMMDEVKQRVAELSNESGHHMSKKAKKEQRATFREFMATIVNDEAPHEEVSVRGGSITLRSWRQVIQLNFIRHCLQGGFQ 335
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14829.3655.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D8LR70_ECTSI3.990e-9286.19Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2XZE4_9STRA6.910e-2131.53Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835YVX4_9STRA2.620e-2033.50Interferon-related developmental regulator-domain-... [more]
A0A7S3Q2Q3_9STRA9.760e-2030.66Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S4J5R0_9STRA3.490e-1931.25Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]
B8CFC4_THAPS9.370e-1930.29IFRD domain-containing protein n=1 Tax=Thalassiosi... [more]
A0A7S1YWK5_9STRA2.010e-1830.10Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S2H1J3_9STRA4.420e-1830.14Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S0PVU5_9STRA6.050e-1830.10Hypothetical protein n=1 Tax=Asterionellopsis glac... [more]
A0A7S2XRI7_9STRA1.730e-1630.81Hypothetical protein n=1 Tax=Attheya septentrional... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14829contigH-canaliculatus_F_contig14829:984..2250 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score290.4
Seed ortholog evalue6.7e-76
Seed eggNOG ortholog2880.D8LR70
Preferred nameIFRD1
GOsGO:0001085,GO:0001558,GO:0001709,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006355,GO:0006357,GO:0006950,GO:0007275,GO:0007399,GO:0007405,GO:0007518,GO:0008134,GO:0008150,GO:0008283,GO:0008361,GO:0009611,GO:0009888,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010721,GO:0010769,GO:0010771,GO:0010975,GO:0010977,GO:0014009,GO:0014706,GO:0016043,GO:0019219,GO:0019222,GO:0022008,GO:0022603,GO:0022604,GO:0030154,GO:0030308,GO:0030516,GO:0030517,GO:0031099,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031344,GO:0031345,GO:0032501,GO:0032502,GO:0032535,GO:0040007,GO:0040008,GO:0042060,GO:0042063,GO:0042246,GO:0042692,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043403,GO:0044093,GO:0044424,GO:0044464,GO:0045165,GO:0045445,GO:0045595,GO:0045596,GO:0045664,GO:0045665,GO:0045893,GO:0045926,GO:0045935,GO:0045944,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048589,GO:0048625,GO:0048638,GO:0048640,GO:0048670,GO:0048671,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050768,GO:0050770,GO:0050771,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051090,GO:0051091,GO:0051093,GO:0051128,GO:0051129,GO:0051171,GO:0051173,GO:0051239,GO:0051241,GO:0051252,GO:0051254,GO:0051960,GO:0051961,GO:0060255,GO:0060284,GO:0060537,GO:0061061,GO:0061351,GO:0061387,GO:0061629,GO:0065007,GO:0065008,GO:0065009,GO:0071840,GO:0072089,GO:0080090,GO:0090066,GO:0120035,GO:1902680,GO:1903506,GO:1903508,GO:2000026,GO:2000112,GO:2001141
EggNOG free text desc.RNA polymerase II sequence-specific DNA-binding transcription factor binding
EggNOG OGsKOG2842@1,KOG2842@2759
COG Functional cat.CO
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionInterferon-related developmental regulator, N-terminal
Ec32 orthologEc-06_004140.1
Exons2
Model size636
Cds size636
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929226.2247975-CDS-H-canaliculatus_F_contig14829:983..11901622929226.2247975-CDS-H-canaliculatus_F_contig14829:983..1190Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14829 984..1190 -
1696845725.2688951-CDS-H-canaliculatus_F_contig14829:983..11901696845725.2688951-CDS-H-canaliculatus_F_contig14829:983..1190Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14829 984..1190 -
1622929226.236029-CDS-H-canaliculatus_F_contig14829:1821..22501622929226.236029-CDS-H-canaliculatus_F_contig14829:1821..2250Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14829 1822..2250 -
1696845725.2824667-CDS-H-canaliculatus_F_contig14829:1821..22501696845725.2824667-CDS-H-canaliculatus_F_contig14829:1821..2250Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14829 1822..2250 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14829.3655.1prot_H-canaliculatus_F_contig14829.3655.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14829 984..2250 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14829.3655.1

>prot_H-canaliculatus_F_contig14829.3655.1 ID=prot_H-canaliculatus_F_contig14829.3655.1|Name=mRNA_H-canaliculatus_F_contig14829.3655.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=212bp
MAREKSGLEVPDTVCAAALSGWGLLATTVSRSWVATRMTKQHLRVFRELL
SSPDMGVRMEAGENLALLHESRIILGLVGAQGGGRGGEGGAADEGQEGEE
GEEEEGDQDDDDGAGEMEAMDLTVLWEEVVEEIKGFITDSSKKLSRETKK
QQRRTFRQLFATIGENEPPEEVVSLQNGSLTVADWAHIKQLNALRSCLQS
GFQVRNCEKER*
back to top

mRNA from alignment at H-canaliculatus_F_contig14829:984..2250-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14829.3655.1 ID=mRNA_H-canaliculatus_F_contig14829.3655.1|Name=mRNA_H-canaliculatus_F_contig14829.3655.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1267bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14829:984..2250- (Hapterophycus canaliculatus Oshoro5f female)
ATGGCGCGTGAAAAATCAGGTCTGGAGGTGCCAGACACGGTGTGCGCAGC
GGCGCTTTCCGGGTGGGGGCTCCTGGCGACGACCGTGTCTCGTTCGTGGG
TGGCGACGCGCATGACCAAGCAGCACCTCCGGGTGTTCCGGGAGCTGCTG
TCGAGCCCCGACATGGGGGTGCGGATGGAGGCCGGGGAGAACCTGGCCCT
CCTGCACGAGAGCCGGATCATTCTAGGTCTCGTCGGCGCGCAGGGGGGGG
GACGCGGAGGGGAGGGGGGCGCGGCAGACGAAGGGCAGGAGGGGGAGGAG
GGGGAGGAGGAAGAGGGAGACCAGGATGACGACGACGGGGCCGGGGAGAT
GGAGGCCATGGACCTGACGGTCCTGTGGGAAGAGGTGGTGGAGGAGATCA
AGGGCTTCATCACCGACAGCAGCAAGAAGGTGCGGCGGGCATCCGCAGAC
GGGGAAGGGGAGGGGAGGGGGGGGTGATTGCCTTGTTGCGGGCGGTCGTT
CGCTGCGTGGTCCCTGGATGGACGGTTTGGTTGGGAAAACTAGGGGCACG
TGTGGCATGGCCCAGCAATCGTCTTTCCGGCTGATCGTCTTCAGCTGCTT
GCGGTTTCTGCTGCAATCGAGGCCTTTGGCGGCAGGTTCGACTGCTTCCG
CTGCTGCATTTCCGGGACCGCTTCTAGCGTCAGATTCGGCGTCACAGTGG
AAAGCAGATACACGTGAATGCCAAGCACAAGACGCAAAAAAAGAGGGACA
CTACCGGTGTTGGTCGTCGGGTTTTTCCATCTCTTGAGCTTTTAGACGTA
GTCGTGGTAAGGACGAAATAGCGCGCCCGTGTGTCCGAAGCTGTGTCTCT
TGTCTGTGGATGTTGGACTTTTGGACGTTGTACTCGGACTCGGTCTCTAG
AGGGAAGCCTGATCCGCTCTCGCGTCCAACGGCCAAGGCACGTCAGCCAC
ACGCACCCCGCCGACTTTTTCGAACATCAGCACATCCCCGCTCCCAACCG
AGCCGAACTGAGCCGAACCGAACCAAAAACCGAAATCGTGCCATCCTCTC
GCACCCGCAGCTGAGCCGGGAGACCAAGAAGCAGCAGCGCCGGACTTTCC
GGCAGTTGTTCGCGACCATCGGGGAGAACGAGCCCCCCGAGGAGGTTGTG
AGCCTGCAGAACGGCAGCCTCACCGTGGCGGACTGGGCGCACATCAAGCA
GCTCAACGCGCTCCGCAGCTGCCTCCAAAGCGGCTTCCAGGTGAGAAACT
GCGAGAAGGAACGCTGA
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14829:984..2250-

>mRNA_H-canaliculatus_F_contig14829.3655.1 ID=mRNA_H-canaliculatus_F_contig14829.3655.1|Name=mRNA_H-canaliculatus_F_contig14829.3655.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1272bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14829:984..2250- (Hapterophycus canaliculatus Oshoro5f female)
ATGGCGCGTGAAAAATCAGGTCTGGAGGTGCCAGACACGGTGTGCGCAGC
GGCGCTTTCCGGGTGGGGGCTCCTGGCGACGACCGTGTCTCGTTCGTGGG
TGGCGACGCGCATGACCAAGCAGCACCTCCGGGTGTTCCGGGAGCTGCTG
TCGAGCCCCGACATGGGGGTGCGGATGGAGGCCGGGGAGAACCTGGCCCT
CCTGCACGAGAGCCGGATCATTCTAGGTCTCGTCGGCGCGCAGGGGGGGG
GACGCGGAGGGGAGGGGGGCGCGGCAGACGAAGGGCAGGAGGGGGAGGAG
GGGGAGGAGGAAGAGGGAGACCAGGATGACGACGACGGGGCCGGGGAGAT
GGAGGCCATGGACCTGACGGTCCTGTGGGAAGAGGTGGTGGAGGAGATCA
AGGGCTTCATCACCGACAGCAGCAAGAAGATGGCGCGTGAAAAATCAGGT
CTGGAGGTGCCAGACACGGTGTGCGCAGCGGCGCTTTCCGGGTGGGGGCT
CCTGGCGACGACCGTGTCTCGTTCGTGGGTGGCGACGCGCATGACCAAGC
AGCACCTCCGGGTGTTCCGGGAGCTGCTGTCGAGCCCCGACATGGGGGTG
CGGATGGAGGCCGGGGAGAACCTGGCCCTCCTGCACGAGAGCCGGATCAT
TCTAGGTCTCGTCGGCGCGCAGGGGGGGGGACGCGGAGGGGAGGGGGGCG
CGGCAGACGAAGGGCAGGAGGGGGAGGAGGGGGAGGAGGAAGAGGGAGAC
CAGGATGACGACGACGGGGCCGGGGAGATGGAGGCCATGGACCTGACGGT
CCTGTGGGAAGAGGTGGTGGAGGAGATCAAGGGCTTCATCACCGACAGCA
GCAAGAAGCTGAGCCGGGAGACCAAGAAGCAGCAGCGCCGGACTTTCCGG
CAGTTGTTCGCGACCATCGGGGAGAACGAGCCCCCCGAGGAGGTTGTGAG
CCTGCAGAACGGCAGCCTCACCGTGGCGGACTGGGCGCACATCAAGCAGC
TCAACGCGCTCCGCAGCTGCCTCCAAAGCGGCTTCCAGGTGAGAAACTGC
GAGAAGGAACGCTGACTGAGCCGGGAGACCAAGAAGCAGCAGCGCCGGAC
TTTCCGGCAGTTGTTCGCGACCATCGGGGAGAACGAGCCCCCCGAGGAGG
TTGTGAGCCTGCAGAACGGCAGCCTCACCGTGGCGGACTGGGCGCACATC
AAGCAGCTCAACGCGCTCCGCAGCTGCCTCCAAAGCGGCTTCCAGGTGAG
AAACTGCGAGAAGGAACGCTGA
back to top