mRNA_H-canaliculatus_F_contig14820.3653.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14820.3653.1
Unique NamemRNA_H-canaliculatus_F_contig14820.3653.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig14820.3653.1 vs. uniprot
Match: D8LIN4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIN4_ECTSI)

HSP 1 Score: 414 bits (1063), Expect = 1.070e-138
Identity = 203/228 (89.04%), Postives = 219/228 (96.05%), Query Frame = 1
Query:    1 RSLEGISVRSMMVNLFFQSVIFLYLADNDTTYMILVTNAIGLAIEVWKVGRFMVGRLDWGGEDGQPRRRIPKVSVRAKETYRKSKTKEFDDIATAHLLYLIAPLMVGYAAYSLLNQQHKGWYSWVLSSLVGFVYMFGFVMMTPQLFINYKLKSVAHMPWRVMSYKFINTFIDDLFAFIVPMPTMHRLACFRDDIVFFVFLYQRYLYPVDRARRNEYGQSATMSEDAKK 684
            RSLEGISVR M+VNLFFQ+VIFL LADNDTTYMILVTNAIGLAIEVWKVGRFMVGRLDWGGEDGQPRR +P++  +AKE+YRKSKTKEFDD+ATAHLLYL+ PLMVGYAAYSLLNQQH+GWYSWVL+SLVGFVYMFGFVMMTPQLFINYKLKSVAHMPWRVMSYKFINTFIDDLFAFIVPMP MHRLACFRDDI+FF+FLYQR+LYPVD+ARRNEYGQSA MS DA+K
Sbjct:  446 RSLEGISVRGMLVNLFFQAVIFLSLADNDTTYMILVTNAIGLAIEVWKVGRFMVGRLDWGGEDGQPRRWVPRMMFQAKESYRKSKTKEFDDVATAHLLYLVGPLMVGYAAYSLLNQQHRGWYSWVLNSLVGFVYMFGFVMMTPQLFINYKLKSVAHMPWRVMSYKFINTFIDDLFAFIVPMPIMHRLACFRDDIIFFIFLYQRHLYPVDKARRNEYGQSAKMSADAEK 673          
BLAST of mRNA_H-canaliculatus_F_contig14820.3653.1 vs. uniprot
Match: A0A6H5KCZ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCZ3_9PHAE)

HSP 1 Score: 330 bits (845), Expect = 5.810e-113
Identity = 156/176 (88.64%), Postives = 171/176 (97.16%), Query Frame = 1
Query:  157 MVGRLDWGGEDGQPRRRIPKVSVRAKETYRKSKTKEFDDIATAHLLYLIAPLMVGYAAYSLLNQQHKGWYSWVLSSLVGFVYMFGFVMMTPQLFINYKLKSVAHMPWRVMSYKFINTFIDDLFAFIVPMPTMHRLACFRDDIVFFVFLYQRYLYPVDRARRNEYGQSATMSEDAKK 684
            MVGRLDWGG+DGQPRRR+P+++ +AKE+YRKSKTKEFDD+ATAHLLYL+ PLMVGYAAYSLLNQQH+GWYSWVL+SLVGFVYMFGFVMMTPQLFINYKLKSVAHMPWRVMSYKFINTFIDDLFAFIVPMP MHRLACFRDDI+FF+FLYQRYLYPVD+ARRNEYGQSA MS DA+K
Sbjct:    1 MVGRLDWGGKDGQPRRRVPRMTFQAKESYRKSKTKEFDDVATAHLLYLVGPLMVGYAAYSLLNQQHRGWYSWVLNSLVGFVYMFGFVMMTPQLFINYKLKSVAHMPWRVMSYKFINTFIDDLFAFIVPMPIMHRLACFRDDIIFFIFLYQRYLYPVDKARRNEYGQSAKMSADAEK 176          
BLAST of mRNA_H-canaliculatus_F_contig14820.3653.1 vs. uniprot
Match: A0A7S4NHV2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NHV2_9STRA)

HSP 1 Score: 271 bits (694), Expect = 4.590e-89
Identity = 136/218 (62.39%), Postives = 169/218 (77.52%), Query Frame = 1
Query:    1 RSLEGISVRSMMVNLFFQSVIFLYLADNDTTYMILVTNAIGLAIEVWKVGRFMVGRLDWGGEDGQPRRRIPKVSVRAKETYRKSKTKEFDDIATAHLLYLIAPLMVGYAAYSLLNQQHKGWYSWVLSSLVGFVYMFGFVMMTPQLFINYKLKSVAHMPWRVMSYKFINTFIDDLFAFIVPMPTMHRLACFRDDIVFFVFLYQRYLYPVDRARRNEYGQ 654
            +S+EGISVRSM+VN  FQ +I+LYLADN+T+ MILV+N IGL IE+WK+ R +      G           K+     ETY KS T+E+D+IAT HL+Y+  PL+ GY  YSL++Q+H+GWYSWVL++LVG++YMFGFVMMTPQLFINYKLKSVAH+ WR MS+K INTFIDDLFAF++ MP MHRLAC RDD VFFVFLYQR++Y  D +R NEYGQ
Sbjct:   29 KSMEGISVRSMIVNAGFQVIIWLYLADNETSRMILVSNGIGLLIELWKISRAITVSFSGG-----------KIQWTETETYAKSTTREYDEIATNHLMYVAMPLVSGYGMYSLVHQKHRGWYSWVLNALVGYIYMFGFVMMTPQLFINYKLKSVAHLNWRTMSFKSINTFIDDLFAFVIRMPIMHRLACLRDDAVFFVFLYQRWIYRTDYSRVNEYGQ 235          
BLAST of mRNA_H-canaliculatus_F_contig14820.3653.1 vs. uniprot
Match: A0A836CN46_9STRA (Cleft lip and palate transmembrane protein 1-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN46_9STRA)

HSP 1 Score: 282 bits (722), Expect = 7.220e-88
Identity = 136/218 (62.39%), Postives = 175/218 (80.28%), Query Frame = 1
Query:    1 RSLEGISVRSMMVNLFFQSVIFLYLADNDTTYMILVTNAIGLAIEVWKVGRFMVGRLDWGGEDGQPRRRIPKVSVRAKETYRKSKTKEFDDIATAHLLYLIAPLMVGYAAYSLLNQQHKGWYSWVLSSLVGFVYMFGFVMMTPQLFINYKLKSVAHMPWRVMSYKFINTFIDDLFAFIVPMPTMHRLACFRDDIVFFVFLYQRYLYPVDRARRNEYGQ 654
            RSLEG+SVRSM+VN FFQ VI LYL DN+T+Y+ILV++A+GLAIE+WK+G+    + +W      P R +P +++ A  +Y KS+T+  D+ AT+HLL+++ PL+VGY AYSL+ ++H+GWYSWVL+SL GFV  FGF+ MTPQLFINYKLKSVAH+PWR M YK +NTFIDD FAFI+ MP MHRLACFRDDI+FFV+LYQR+ Y  D +R NEYGQ
Sbjct:  425 RSLEGLSVRSMVVNCFFQIVITLYLFDNETSYLILVSSAVGLAIELWKLGKAFSAKCEWA-----PGRLLPSITMTASASYAKSETRRHDETATSHLLFVVVPLVVGYTAYSLVQREHRGWYSWVLNSLTGFVCEFGFIAMTPQLFINYKLKSVAHLPWRTMVYKSLNTFIDDCFAFIIKMPWMHRLACFRDDIIFFVYLYQRWAYRTDYSRVNEYGQ 637          
BLAST of mRNA_H-canaliculatus_F_contig14820.3653.1 vs. uniprot
Match: B8BSI8_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BSI8_THAPS)

HSP 1 Score: 273 bits (697), Expect = 2.320e-87
Identity = 128/225 (56.89%), Postives = 174/225 (77.33%), Query Frame = 1
Query:    1 RSLEGISVRSMMVNLFFQSVIFLYLADNDTTYMILVTNAIGLAIEVWKVGRFMVGRLDWGGEDGQPRRRIPKVSVRAKETYRKSKTKEFDDIATAHLLYLIAPLMVGYAAYSLLNQQHKGWYSWVLSSLVGFVYMFGFVMMTPQLFINYKLKSVAHMPWRVMSYKFINTFIDDLFAFIVPMPTMHRLACFRDDIVFFVFLYQRYLYPVDRARRNEYGQSATMSED 675
            +SLEG+S+RSM+VN FF  +I LYLADNDT++M+L +N +GLAI++WK+ + +  + + G           K+     ++Y+KS+TKE+D+IAT+HLL++  PL+ GY  YSL  Q+HKGWYSW+L++LVGF+YMFGFVMM+PQLFINYKL+SVAH+ WR M+YK INTFIDDLFAF++ MP MHRLAC RDD++FF+F YQR+ Y VD  R NE+GQ    +E+
Sbjct:  128 KSLEGLSLRSMIVNCFFSIIILLYLADNDTSFMVLASNGVGLAIDIWKISKAISFKFEGG-----------KIEWVEAQSYKKSRTKEYDEIATSHLLFVTMPLVAGYGMYSLFYQKHKGWYSWILNTLVGFIYMFGFVMMSPQLFINYKLQSVAHLNWRTMTYKSINTFIDDLFAFVIKMPIMHRLACLRDDVIFFIFCYQRWKYKVDYTRVNEFGQCVAPTEE 341          
BLAST of mRNA_H-canaliculatus_F_contig14820.3653.1 vs. uniprot
Match: A0A7S2UDR7_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UDR7_9STRA)

HSP 1 Score: 273 bits (699), Expect = 3.140e-85
Identity = 135/230 (58.70%), Postives = 177/230 (76.96%), Query Frame = 1
Query:    1 RSLEGISVRSMMVNLFFQSVIFLYLADNDTTYMILVTNAIGLAIEVWKVGR-----FMVGRLDWGGEDGQPRRRIPKVSVRAKETYRKSKTKEFDDIATAHLLYLIAPLMVGYAAYSLLNQQHKGWYSWVLSSLVGFVYMFGFVMMTPQLFINYKLKSVAHMPWRVMSYKFINTFIDDLFAFIVPMPTMHRLACFRDDIVFFVFLYQRYLYPVDRARRNEYGQSATMSED 675
            +S+EG+S+RSM++N+FFQ VI LYLADN+T+YM+L++N +GL IE+WK+       F  GR+ W               V A  +Y KSKTK++D+IAT+HLL++  PL+ GY  YSLL+Q+HKGW+SWVL++LVGF+YMFGFVMMTPQLFINYKL+SVAH+ WR M+YK +NTFIDDLFAF++ MP MHRLAC RDD+VFFV+LYQR+ Y VD  R NE+GQ    +E+
Sbjct:  357 KSMEGLSLRSMVINVFFQIVILLYLADNETSYMVLMSNGVGLLIEIWKITTAVKISFKGGRIQW---------------VEA-TSYSKSKTKKYDEIATSHLLFITMPLVAGYGMYSLLHQRHKGWHSWVLNTLVGFIYMFGFVMMTPQLFINYKLQSVAHLNWRTMTYKSVNTFIDDLFAFVIKMPIMHRLACLRDDVVFFVYLYQRWAYRVDYTRVNEFGQCIQPTEE 570          
BLAST of mRNA_H-canaliculatus_F_contig14820.3653.1 vs. uniprot
Match: A0A7S2W867_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W867_9STRA)

HSP 1 Score: 272 bits (696), Expect = 1.060e-84
Identity = 130/218 (59.63%), Postives = 176/218 (80.73%), Query Frame = 1
Query:    1 RSLEGISVRSMMVNLFFQSVIFLYLADNDTTYMILVTNAIGLAIEVWKVGRFMVGRLDWGGEDGQPRRRIPKVSVRAKETYRKSKTKEFDDIATAHLLYLIAPLMVGYAAYSLLNQQHKGWYSWVLSSLVGFVYMFGFVMMTPQLFINYKLKSVAHMPWRVMSYKFINTFIDDLFAFIVPMPTMHRLACFRDDIVFFVFLYQRYLYPVDRARRNEYGQ 654
            +   G+SVR++ +N FF +VI LYL D+DT++M+L+T++IGL IE WKV + +  RL    E G+         +R  ++Y+ S+TKE+D+IAT+HLL+L+ PLMVGY+AYSL++ +HKGWYSW+LSSLVGF+Y FGFVMMTPQLFINYKLKSVAH+PW+ M YK +NTFIDDLF+F++ MP MHRL+C RDD++F V+LYQR++YPVD++R NEYGQ
Sbjct:  385 KDFRGLSVRTIALNCFFHAVILLYLFDSDTSWMVLMTSSIGLVIEFWKVSKAI--RLQVDPETGR-------WGLRESDSYQSSRTKEYDEIATSHLLFLVLPLMVGYSAYSLVHFKHKGWYSWILSSLVGFIYAFGFVMMTPQLFINYKLKSVAHLPWKAMVYKSLNTFIDDLFSFVIKMPWMHRLSCLRDDVIFLVYLYQRWIYPVDKSRVNEYGQ 593          
BLAST of mRNA_H-canaliculatus_F_contig14820.3653.1 vs. uniprot
Match: A0A7S4RNP8_9STRA (Hypothetical protein n=5 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RNP8_9STRA)

HSP 1 Score: 271 bits (692), Expect = 2.160e-83
Identity = 129/225 (57.33%), Postives = 172/225 (76.44%), Query Frame = 1
Query:    1 RSLEGISVRSMMVNLFFQSVIFLYLADNDTTYMILVTNAIGLAIEVWKVGRFMVGRLDWGGEDGQPRRRIPKVSVRAKETYRKSKTKEFDDIATAHLLYLIAPLMVGYAAYSLLNQQHKGWYSWVLSSLVGFVYMFGFVMMTPQLFINYKLKSVAHMPWRVMSYKFINTFIDDLFAFIVPMPTMHRLACFRDDIVFFVFLYQRYLYPVDRARRNEYGQSATMSED 675
            +S+EG+S+RSM+VN FFQ VI LYLADN+T +M+L++N +GL IE+WK+ + +    + G           K+      +Y+ SKTKE+D+IAT+HLL++  PL+ GY  YSL++Q+HKGWYSW+L++LVGF+YMFGFVMMTPQLFINYKL+SVAH+ WR M+YK INTFIDDLFAF++ MP MHRLAC RDD++F VF YQRY Y  D  R NE+GQ A  +++
Sbjct:  440 KSMEGLSLRSMVVNTFFQVVILLYLADNETNFMVLMSNGVGLLIEIWKISKAVKISFEGG-----------KIHWEEASSYKMSKTKEYDEIATSHLLFITMPLVAGYGLYSLVHQKHKGWYSWILNTLVGFIYMFGFVMMTPQLFINYKLQSVAHLNWRTMTYKSINTFIDDLFAFVIKMPIMHRLACLRDDVIFLVFCYQRYKYRTDYTRVNEFGQCAQPTDE 653          
BLAST of mRNA_H-canaliculatus_F_contig14820.3653.1 vs. uniprot
Match: A0A1J3FQ35_NOCCA (CLPTM1-like membrane protein cnrB (Fragment) n=2 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3FQ35_NOCCA)

HSP 1 Score: 251 bits (642), Expect = 2.350e-81
Identity = 118/217 (54.38%), Postives = 164/217 (75.58%), Query Frame = 1
Query:    1 RSLEGISVRSMMVNLFFQSVIFLYLADNDTTYMILVTNAIGLAIEVWKVGRFMVGRLDWGGEDGQPRRRIPKVSVRAKETYRKSKTKEFDDIATAHLLYLIAPLMVGYAAYSLLNQQHKGWYSWVLSSLVGFVYMFGFVMMTPQLFINYKLKSVAHMPWRVMSYKFINTFIDDLFAFIVPMPTMHRLACFRDDIVFFVFLYQRYLYPVDRARRNEYG 651
            +S+EG+S +S+++N   Q +IFLYL DNDT++MIL ++ +G+ IE WK+G+ M   +D  G        IP++    +E+Y  +KTKE+DDIA   L Y++  L+ G+A YSL  ++HK WYSW+LSSL   VYMFGF+MM PQLFINYKLKSVAH+PWR M+YKF+NT IDDLFAF++ MP +HRL+ FRDD++F ++LYQR++YPVD+ R NE+G
Sbjct:    1 KSMEGLSAKSVVLNFICQFIIFLYLLDNDTSWMILASSGVGVCIEFWKIGKAMRIEIDRSGL-------IPRLRFHDRESYASNKTKEYDDIAMKFLSYVVLLLVAGFAIYSLAYERHKSWYSWILSSLTSCVYMFGFIMMCPQLFINYKLKSVAHLPWRQMTYKFLNTIIDDLFAFVIKMPMLHRLSVFRDDVIFLIYLYQRWVYPVDKTRVNEFG 210          
BLAST of mRNA_H-canaliculatus_F_contig14820.3653.1 vs. uniprot
Match: A0A662Y206_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y206_9STRA)

HSP 1 Score: 253 bits (647), Expect = 6.290e-81
Identity = 126/225 (56.00%), Postives = 165/225 (73.33%), Query Frame = 1
Query:    1 RSLEGISVRSMMVNLFFQSVIFLYLADNDTTYMILVTNAIGLAIEVWKVGRFMVGRLDWGGEDGQPRRRIPKVSVRAKETYRKSKTKEFDDIATAHLLYLIAPLMVGYAAYSLLNQQHKGWYSWVLSSLVGFVYMFGFVMMTPQLFINYKLKSVAHMPWRVMSYKFINTFIDDLFAFIVPMPTMHRLACFRDDIVFFVFLYQRYLYPVDRARRNEYGQSATMSED 675
            +SL G+S+R++ +N FFQ VIFLYL DNDT++MILV + I L I+VWK+ + +V   D   ED        K+ +   E+Y  S T E D +A AHL +++ PL+VG AAY+L    HKGWYSW++SSL  FVY FGF+MMTPQL+INYKLKSVAH+PWR M YK +NTFIDDLFAF++ MP MHRL+CFRDD++FF+++YQR+ YPVD  R NE+GQ     E+
Sbjct:   39 KSLAGLSLRTIALNTFFQLVIFLYLMDNDTSWMILVQSGIALLIDVWKIKKAIVVSRD---EDN-------KLVISGVESYEDSPTAEHDRVAVAHLSFVLYPLIVGQAAYTLTYGVHKGWYSWIISSLTSFVYAFGFIMMTPQLYINYKLKSVAHLPWRAMVYKSLNTFIDDLFAFVIKMPWMHRLSCFRDDLIFFIYIYQRWKYPVDAKRTNEFGQGPVEEEE 253          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14820.3653.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIN4_ECTSI1.070e-13889.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KCZ3_9PHAE5.810e-11388.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S4NHV2_9STRA4.590e-8962.39Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A836CN46_9STRA7.220e-8862.39Cleft lip and palate transmembrane protein 1-domai... [more]
B8BSI8_THAPS2.320e-8756.89Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S2UDR7_9STRA3.140e-8558.70Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S2W867_9STRA1.060e-8459.63Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S4RNP8_9STRA2.160e-8357.33Hypothetical protein n=5 Tax=Ditylum brightwellii ... [more]
A0A1J3FQ35_NOCCA2.350e-8154.38CLPTM1-like membrane protein cnrB (Fragment) n=2 T... [more]
A0A662Y206_9STRA6.290e-8156.00Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14820contigH-canaliculatus_F_contig14820:271..2047 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score403.3
Seed ortholog evalue7.3e-110
Seed eggNOG ortholog2880.D8LIN4
EggNOG free text desc.apoptotic process
EggNOG OGsKOG2489@1,KOG2489@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size684
Cds size654
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14820.3653.1prot_H-canaliculatus_F_contig14820.3653.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14820 271..2017 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929226.024475-CDS-H-canaliculatus_F_contig14820:270..5041622929226.024475-CDS-H-canaliculatus_F_contig14820:270..504Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14820 271..504 -
1696845725.1512475-CDS-H-canaliculatus_F_contig14820:270..5041696845725.1512475-CDS-H-canaliculatus_F_contig14820:270..504Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14820 271..504 -
1622929226.0389545-CDS-H-canaliculatus_F_contig14820:925..11261622929226.0389545-CDS-H-canaliculatus_F_contig14820:925..1126Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14820 926..1126 -
1696845725.1671426-CDS-H-canaliculatus_F_contig14820:925..11261696845725.1671426-CDS-H-canaliculatus_F_contig14820:925..1126Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14820 926..1126 -
1622929226.054379-CDS-H-canaliculatus_F_contig14820:1422..15361622929226.054379-CDS-H-canaliculatus_F_contig14820:1422..1536Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14820 1423..1536 -
1696845725.1830227-CDS-H-canaliculatus_F_contig14820:1422..15361696845725.1830227-CDS-H-canaliculatus_F_contig14820:1422..1536Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14820 1423..1536 -
1622929226.0723891-CDS-H-canaliculatus_F_contig14820:1912..20171622929226.0723891-CDS-H-canaliculatus_F_contig14820:1912..2017Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14820 1913..2017 -
1696845725.1997051-CDS-H-canaliculatus_F_contig14820:1912..20171696845725.1997051-CDS-H-canaliculatus_F_contig14820:1912..2017Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14820 1913..2017 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929226.0978854-UTR-H-canaliculatus_F_contig14820:2017..20471622929226.0978854-UTR-H-canaliculatus_F_contig14820:2017..2047Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14820 2018..2047 -
1696845725.2100346-UTR-H-canaliculatus_F_contig14820:2017..20471696845725.2100346-UTR-H-canaliculatus_F_contig14820:2017..2047Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14820 2018..2047 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14820.3653.1

>prot_H-canaliculatus_F_contig14820.3653.1 ID=prot_H-canaliculatus_F_contig14820.3653.1|Name=mRNA_H-canaliculatus_F_contig14820.3653.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=218bp
MMVNLFFQSVIFLYLADNDTTYMILVTNAIGLAIEVWKVGRFMVGRLDWG
GEDGQPRRRIPKVSVRAKETYRKSKTKEFDDIATAHLLYLIAPLMVGYAA
YSLLNQQHKGWYSWVLSSLVGFVYMFGFVMMTPQLFINYKLKSVAHMPWR
VMSYKFINTFIDDLFAFIVPMPTMHRLACFRDDIVFFVFLYQRYLYPVDR
ARRNEYGQSATMSEDAKK
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mRNA from alignment at H-canaliculatus_F_contig14820:271..2047-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14820.3653.1 ID=mRNA_H-canaliculatus_F_contig14820.3653.1|Name=mRNA_H-canaliculatus_F_contig14820.3653.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1777bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14820:271..2047- (Hapterophycus canaliculatus Oshoro5f female)
AGGTCCTTGGAGGGCATTTCTGTGCGATCCATGATGGTCAACCTGTTCTT CCAGTCTGTTATTTTCCTGTACCTTGCGGACAACGACACGACCTACATGA TCCTTGTTACCAATGCCATCGGGTTGGCCATCGAGGTATGCCTCTGTCGT TGACGTTGTTTTTCTTGTTGTTGTTGGAGTTTTTTTTTTTTTGTGATGTG ACTGTTTTTGTTGTGTGTCGTGTTGTTGCTGTGGGTGACACAGCCCGATC CACGTGCATACCCACCCACCACCTCCACGACTGCTGTAAACCACGCTCTC CTCCCCGCGTACAAGTAGACCGTCCGACCATCTCGGCAAGCTGGCCAGCA CACCGTACGAGACGCATTCACCACACACCTCGTCGTGATCCAGACTCCGT AGAGCCTCTGCAGGCAGCGCGGTGGATACCGTTCTCCCGACGCGACTCCA AACGCTTCTCGCTTCATCGGGGTTTCCAAGGCTTACGGCGGTTTCCGCTT GTTTTGTGCAGGTGTGGAAGGTGGGAAGATTCATGGTCGGGCGGCTGGAC TGGGGGGGCGAGGACGGGCAGCCGCGGCGACGGATCCCGAAGGTTTCCGT GCGGGCGAAGGAGACCTACCGCAAGGTACGCGCCAAGCCTTGCTGCTGCT GCTTCCAGTGCTCTCGTTAGGGAGGGCACGAGTCTTGTACGTCACCCCAG CTCCGAGCTATTTCGTCCTTCCCTCCGCCCAAGCGAAACAAGCGAGGGCG TGTGCGCTGGGCCCACTCGCCTTGGGCGTAAACCCCTGCCGTTCTGTAAG TTTTTTGACAATTAAAGAAACGAAAAGTGGCGTGACCACACCGCACCGAA CCCCCGAGCTAACTGCGCTTCACGCACACGCTGCTACGTGCCGCGCGCGC CGGGCTGCGGACGGCTGCCAGAGCAAGACGAAGGAGTTCGACGACATCGC GACCGCGCATCTCCTCTACCTGATCGCGCCGCTCATGGTCGGGTACGCCG CCTACTCGCTGCTGAACCAGCAGCACAAGGGGTGGTACAGCTGGGTGCTG AGCTCTCTCGTGGGGTTCGTGTACATGTTCGGGTTCGTCATGATGACGCC TCAGCTCTTCATCAACTACAAGGCGAGTGGGCGAAGATGAGGAAACGAAT CGCATGGAAGAAAAGCGACACGTGCAAGGTCGCGTCTAAAGTATAAAATA CCTTGAAGCTTCGCGGCCATTCCCTTCTCTTTCTGCCGTCGTGTTTTGTG TGCAGTTCTTTTTTGTTTGGCCATGCTTCCGCTGTCTGGAGCACCACTAA ATTCTGTGGATCGGCGCCGCGACGTGTAACAGAGGCTCGGAACTGAGGCC ACGAAGTTTGTGGGCTAACTCTCTATTTCAACGCTGTATCTCACCTACTC CTCCCAACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC TCTCTCGTGCGTTCCGTACTCTTGCCACTCCGCACCACCTTAACGCTCTT CCCCGCCGCTACCCCACCGCCACCACCACACGGCCCCAAACAGCTCAAGA GCGTGGCGCACATGCCGTGGAGAGTGATGTCGTACAAGTTCATCAACACC TTCATCGACGACCTGTTCGCCTTCATCGTGCCCATGCCCACCATGCACCG CCTCGCCTGCTTCCGAGACGACATCGTGTTCTTCGTCTTCCTGTACCAGC GCTACCTCTACCCCGTCGACCGCGCCCGGCGCAATGAGTACGGGCAGTCG GCCACCATGTCGGAGGATGCGAAAAAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14820:271..2047-

>mRNA_H-canaliculatus_F_contig14820.3653.1 ID=mRNA_H-canaliculatus_F_contig14820.3653.1|Name=mRNA_H-canaliculatus_F_contig14820.3653.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1308bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14820:271..2047- (Hapterophycus canaliculatus Oshoro5f female)
ATGATGGTCAACCTGTTCTTCCAGTCTGTTATTTTCCTGTACCTTGCGGA
CAACGACACGACCTACATGATCCTTGTTACCAATGCCATCGGGTTGGCCA
TCGAGATGATGGTCAACCTGTTCTTCCAGTCTGTTATTTTCCTGTACCTT
GCGGACAACGACACGACCTACATGATCCTTGTTACCAATGCCATCGGGTT
GGCCATCGAGGTGTGGAAGGTGGGAAGATTCATGGTCGGGCGGCTGGACT
GGGGGGGCGAGGACGGGCAGCCGCGGCGACGGATCCCGAAGGTTTCCGTG
CGGGCGAAGGAGACCTACCGCAAGGTGTGGAAGGTGGGAAGATTCATGGT
CGGGCGGCTGGACTGGGGGGGCGAGGACGGGCAGCCGCGGCGACGGATCC
CGAAGGTTTCCGTGCGGGCGAAGGAGACCTACCGCAAGAGCAAGACGAAG
GAGTTCGACGACATCGCGACCGCGCATCTCCTCTACCTGATCGCGCCGCT
CATGGTCGGGTACGCCGCCTACTCGCTGCTGAACCAGCAGCACAAGGGGT
GGTACAGCTGGGTGCTGAGCTCTCTCGTGGGGTTCGTGTACATGTTCGGG
TTCGTCATGATGACGCCTCAGCTCTTCATCAACTACAAGAGCAAGACGAA
GGAGTTCGACGACATCGCGACCGCGCATCTCCTCTACCTGATCGCGCCGC
TCATGGTCGGGTACGCCGCCTACTCGCTGCTGAACCAGCAGCACAAGGGG
TGGTACAGCTGGGTGCTGAGCTCTCTCGTGGGGTTCGTGTACATGTTCGG
GTTCGTCATGATGACGCCTCAGCTCTTCATCAACTACAAGCTCAAGAGCG
TGGCGCACATGCCGTGGAGAGTGATGTCGTACAAGTTCATCAACACCTTC
ATCGACGACCTGTTCGCCTTCATCGTGCCCATGCCCACCATGCACCGCCT
CGCCTGCTTCCGAGACGACATCGTGTTCTTCGTCTTCCTGTACCAGCGCT
ACCTCTACCCCGTCGACCGCGCCCGGCGCAATGAGTACGGGCAGTCGGCC
ACCATGTCGGAGGATGCGAAAAAGCTCAAGAGCGTGGCGCACATGCCGTG
GAGAGTGATGTCGTACAAGTTCATCAACACCTTCATCGACGACCTGTTCG
CCTTCATCGTGCCCATGCCCACCATGCACCGCCTCGCCTGCTTCCGAGAC
GACATCGTGTTCTTCGTCTTCCTGTACCAGCGCTACCTCTACCCCGTCGA
CCGCGCCCGGCGCAATGAGTACGGGCAGTCGGCCACCATGTCGGAGGATG
CGAAAAAG
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