mRNA_H-canaliculatus_F_contig1482.3651.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1482.3651.1
Unique NamemRNA_H-canaliculatus_F_contig1482.3651.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1482.3651.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1482contigH-canaliculatus_F_contig1482:5144..5581 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size438
Cds size375
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1482.3651.1prot_H-canaliculatus_F_contig1482.3651.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1482 5174..5548 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929225.7436476-UTR-H-canaliculatus_F_contig1482:5143..51731622929225.7436476-UTR-H-canaliculatus_F_contig1482:5143..5173Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1482 5144..5173 +
1696845725.0187905-UTR-H-canaliculatus_F_contig1482:5143..51731696845725.0187905-UTR-H-canaliculatus_F_contig1482:5143..5173Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1482 5144..5173 +
1622929225.7721038-UTR-H-canaliculatus_F_contig1482:5548..55811622929225.7721038-UTR-H-canaliculatus_F_contig1482:5548..5581Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1482 5549..5581 +
1696845725.0356104-UTR-H-canaliculatus_F_contig1482:5548..55811696845725.0356104-UTR-H-canaliculatus_F_contig1482:5548..5581Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1482 5549..5581 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929225.7613807-CDS-H-canaliculatus_F_contig1482:5173..55481622929225.7613807-CDS-H-canaliculatus_F_contig1482:5173..5548Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1482 5174..5548 +
1696845725.02701-CDS-H-canaliculatus_F_contig1482:5173..55481696845725.02701-CDS-H-canaliculatus_F_contig1482:5173..5548Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1482 5174..5548 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1482.3651.1

>prot_H-canaliculatus_F_contig1482.3651.1 ID=prot_H-canaliculatus_F_contig1482.3651.1|Name=mRNA_H-canaliculatus_F_contig1482.3651.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=125bp
MLLISCATACHRPAALHRLLGVLRAVSFELRFDGCCRHGSFVGRRTGLRS
ALMTSESVAGDAAQKRAAARSPKLAHSRQASSIVDVVCCPSRVRRFKRLR
RHARQTHRPLPPVGASTLTPPFST*
back to top

mRNA from alignment at H-canaliculatus_F_contig1482:5144..5581+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1482.3651.1 ID=mRNA_H-canaliculatus_F_contig1482.3651.1|Name=mRNA_H-canaliculatus_F_contig1482.3651.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=438bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1482:5144..5581+ (Hapterophycus canaliculatus Oshoro5f female)
GTTGTTGTTGTTATTGTCGTTGTTATTTCCATGCTTCTGATATCCTGTGC
CACTGCTTGTCATCGCCCCGCTGCCCTTCACCGGTTGCTTGGTGTGCTGC
GCGCGGTTTCGTTTGAACTTCGCTTCGACGGTTGTTGCCGGCATGGCTCG
TTTGTGGGACGGCGAACCGGCTTGCGTTCTGCGTTAATGACCAGCGAGAG
CGTTGCCGGCGACGCAGCACAAAAGCGAGCAGCTGCGAGGTCCCCAAAGC
TCGCGCATTCCCGCCAAGCTTCTTCTATCGTAGATGTCGTCTGCTGTCCC
TCACGGGTTCGGCGTTTTAAGCGCTTGCGACGACACGCGAGGCAGACGCA
TCGACCTCTTCCGCCTGTCGGTGCATCGACACTTACTCCACCGTTCTCAA
CCTAAGAGAGCCCCCCCTGCTCTCGTCCATGCTTATAT
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1482:5144..5581+

>mRNA_H-canaliculatus_F_contig1482.3651.1 ID=mRNA_H-canaliculatus_F_contig1482.3651.1|Name=mRNA_H-canaliculatus_F_contig1482.3651.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=750bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1482:5144..5581+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCTTCTGATATCCTGTGCCACTGCTTGTCATCGCCCCGCTGCCCTTCA
CCGGTTGCTTGGTGTGCTGCGCGCGGTTTCGTTTGAACTTCGCTTCGACG
GTTGTTGCCGGCATGGCTCGTTTGTGGGACGGCGAACCGGCTTGCGTTCT
GCGTTAATGACCAGCGAGAGCGTTGCCGGCGACGCAGCACAAAAGCGAGC
AGCTGCGAGGTCCCCAAAGCTCGCGCATTCCCGCCAAGCTTCTTCTATCG
TAGATGTCGTCTGCTGTCCCTCACGGGTTCGGCGTTTTAAGCGCTTGCGA
CGACACGCGAGGCAGACGCATCGACCTCTTCCGCCTGTCGGTGCATCGAC
ACTTACTCCACCGTTCTCAACCTAAATGCTTCTGATATCCTGTGCCACTG
CTTGTCATCGCCCCGCTGCCCTTCACCGGTTGCTTGGTGTGCTGCGCGCG
GTTTCGTTTGAACTTCGCTTCGACGGTTGTTGCCGGCATGGCTCGTTTGT
GGGACGGCGAACCGGCTTGCGTTCTGCGTTAATGACCAGCGAGAGCGTTG
CCGGCGACGCAGCACAAAAGCGAGCAGCTGCGAGGTCCCCAAAGCTCGCG
CATTCCCGCCAAGCTTCTTCTATCGTAGATGTCGTCTGCTGTCCCTCACG
GGTTCGGCGTTTTAAGCGCTTGCGACGACACGCGAGGCAGACGCATCGAC
CTCTTCCGCCTGTCGGTGCATCGACACTTACTCCACCGTTCTCAACCTAA
back to top