mRNA_H-canaliculatus_F_contig14814.3649.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14814.3649.1
Unique NamemRNA_H-canaliculatus_F_contig14814.3649.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig14814.3649.1 vs. uniprot
Match: A0A6H5JUU1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUU1_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 1.230e-24
Identity = 54/72 (75.00%), Postives = 62/72 (86.11%), Query Frame = 1 
Query:    1 LKRVPDEVIRKVEQRCLALHERLGAAYPLDNDAIQRAKNEQSESVRLLSVTGEREFDLPVHWLPV-DDGSDD 213
            LKRVP++VI+KVEQR LA HERL AA+PLD+ A+QRAK+EQ +SVRLL  TGEREFDLPVHWLPV D GS D
Sbjct:  389 LKRVPEDVIQKVEQRYLASHERLAAAFPLDDGAVQRAKDEQKQSVRLLRQTGEREFDLPVHWLPVYDSGSGD 460
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14814.3649.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JUU1_9PHAE1.230e-2475.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14814contigH-canaliculatus_F_contig14814:1025..2436 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size270
Cds size270
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929225.6788425-CDS-H-canaliculatus_F_contig14814:1024..12061622929225.6788425-CDS-H-canaliculatus_F_contig14814:1024..1206Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14814 1025..1206 -
1696845725.0025434-CDS-H-canaliculatus_F_contig14814:1024..12061696845725.0025434-CDS-H-canaliculatus_F_contig14814:1024..1206Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14814 1025..1206 -
1622929225.6937833-CDS-H-canaliculatus_F_contig14814:2348..24361622929225.6937833-CDS-H-canaliculatus_F_contig14814:2348..2436Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14814 2349..2436 -
1696845725.0107877-CDS-H-canaliculatus_F_contig14814:2348..24361696845725.0107877-CDS-H-canaliculatus_F_contig14814:2348..2436Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14814 2349..2436 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14814.3649.1prot_H-canaliculatus_F_contig14814.3649.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14814 1025..2436 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14814.3649.1

>prot_H-canaliculatus_F_contig14814.3649.1 ID=prot_H-canaliculatus_F_contig14814.3649.1|Name=mRNA_H-canaliculatus_F_contig14814.3649.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=90bp
LKRVPDEVIRKVEQRCLALHERLGAAYPLDNDAIQRAKNEQSESVRLLSV
TGEREFDLPVHWLPVDDGSDDGGAGSDADDGGDVGEGDG*
back to top

mRNA from alignment at H-canaliculatus_F_contig14814:1025..2436-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14814.3649.1 ID=mRNA_H-canaliculatus_F_contig14814.3649.1|Name=mRNA_H-canaliculatus_F_contig14814.3649.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1412bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14814:1025..2436- (Hapterophycus canaliculatus Oshoro5f female)
CTCAAGCGCGTGCCAGATGAAGTCATTCGAAAGGTGGAGCAGCGTTGCTT
GGCATTGCACGAGCGCCTGGGAGCGGCGTACCCACTAGGTGAGGTAAGTA
TTTTGGTAGAGATTTGCGGTGAGAAGCATCACAGGTCCAGGGTGCCGCAT
CTCTACCAGAGAGCACCCTCCACAGAGGTTCCCTTGTAACGACAGCTACG
ATGTATGGACAAGTTTGGCAACATGAGAGACTTTATCTATTGTAAGCAAA
AACTTAGTTTCTAACGCGCCCGCTCGTGGCTCTGTAGCTCACAACCGCCT
TTCCTATTCTGCAGTGTAATTGGCCCCTAGCGTGATCAGTGATTCCTCGC
TGAAGAAGGGACCAGAGTTGTTGCGAAATGCACAAGCAGATAGGTAGGTA
TGTCATGGTTTTGGCCAGCCCATGTGCCGGGGGGCGTGAACTTCGAGCCC
AGAGTGTTTCGAACACGGAGAGTTTGACCAAGACGTCATTGTCACCGCTT
AATGCCCCGATTCCCCTTCGTCGTGGACCATAGCCCAAAAACGTTGCATA
ATCACCGAAGACCGACATGCTGAAAGGACCTGCGTTGGACCCCCCTGTTG
GTATATATTCAATGTCAGTCATTACTGATAGCACTGTAATAGACAGTCGG
TACAATAGCACCTTTGGATTGTTCCAGCAATAGTCTCAATGTATGGTGTT
GTGGCTGGTCGGGTCATAATACATGCCCGAGGTACCACGAATAGGTAGTA
CACCGGACTTATGTCCAATAGGAATTTCCTGTAGTCTTATCATAGGTCGG
ATTATCCGCCACACTCAGATTCATTGGTCAAGCATTAGTCTAAGGTGTTT
CTTCCCGGTGTGATCAGCTGAGTGGCAAGCCCCCGCGGTACTCGCCCCCA
CCTGATCACTCTCTTCTCTTATCTCTCCCTCCTCTCTCTTGTTACCTTTC
GGCCACATAAGCGCCAATTCAAACCATCATCTCTGGTCTACAAACAAGTG
TACTTTACAGTCACTCTGTGAGCCTCTGCACACTGTTTCTACACAGTTGC
CATTGCCAGATACAACCAATCAAGGTTTACATCCGAACACCCCCCACGAG
TAATGTAGGGACTATGCCTAGTTCCATCGTTGCTCATAGGTTGCGGGTTG
GACATACCGTTGCTTACTTCATACCGAGTATTTTTTTACGGATCATTCTC
TCGTCCTTATGCCGCCATCCACGAAATCAGATAATGACGCCATCCAGAGA
GCGAAAAACGAGCAAAGCGAATCTGTGCGGCTGCTAAGCGTGACGGGGGA
ACGGGAATTCGACCTTCCAGTACACTGGCTTCCCGTCGACGACGGAAGTG
ACGACGGTGGCGCTGGATCTGATGCTGACGACGGCGGCGATGTTGGAGAG
GGCGACGGTTGA
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14814:1025..2436-

>mRNA_H-canaliculatus_F_contig14814.3649.1 ID=mRNA_H-canaliculatus_F_contig14814.3649.1|Name=mRNA_H-canaliculatus_F_contig14814.3649.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=540bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14814:1025..2436- (Hapterophycus canaliculatus Oshoro5f female)
CTCAAGCGCGTGCCAGATGAAGTCATTCGAAAGGTGGAGCAGCGTTGCTT
GGCATTGCACGAGCGCCTGGGAGCGGCGTACCCACTAGCTCAAGCGCGTG
CCAGATGAAGTCATTCGAAAGGTGGAGCAGCGTTGCTTGGCATTGCACGA
GCGCCTGGGAGCGGCGTACCCACTAGATAATGACGCCATCCAGAGAGCGA
AAAACGAGCAAAGCGAATCTGTGCGGCTGCTAAGCGTGACGGGGGAACGG
GAATTCGACCTTCCAGTACACTGGCTTCCCGTCGACGACGGAAGTGACGA
CGGTGGCGCTGGATCTGATGCTGACGACGGCGGCGATGTTGGAGAGGGCG
ACGGTTGAATAATGACGCCATCCAGAGAGCGAAAAACGAGCAAAGCGAAT
CTGTGCGGCTGCTAAGCGTGACGGGGGAACGGGAATTCGACCTTCCAGTA
CACTGGCTTCCCGTCGACGACGGAAGTGACGACGGTGGCGCTGGATCTGA
TGCTGACGACGGCGGCGATGTTGGAGAGGGCGACGGTTGA
back to top