mRNA_H-canaliculatus_F_contig148.3643.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig148.3643.1
Unique NamemRNA_H-canaliculatus_F_contig148.3643.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig148.3643.1 vs. uniprot
Match: D7G6U5_ECTSI (MFS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6U5_ECTSI)

HSP 1 Score: 373 bits (958), Expect = 1.080e-122
Identity = 202/300 (67.33%), Postives = 238/300 (79.33%), Query Frame = 1 
Query:    4 GRYVEMSAILERMTNAPVYLPPELAVKRRAVEEKWPDFRARWQSWRFSLGGGRYQSVSRSSPHESEESSAMISQEEDGAGFTCAGSTCGGDQEGHYDGGMMRVLCPGTDTRIRRSANVLVAVWFTISYGTYGVATWNNQLFADVGLSNPFLCSFVYSLSNLPGNVGSIVLVERVGRKRLLSTSMALAAMAATLFALGSGSGAGVIVSGACLFNAFSTCGWNALGVVSTEAFPTASRVSGMGLVSAAGRMGSIAAQFVNGSLEENVLVLLMVTSGLTLVGSVASLLLPRETLGLPLDDHDP 903
            GRY EM  +++RMTNAPV+LP  L V+  +     P F + WQSWR SLGGG YQS S  +P +  E+S+MI+  ED       GS   G ++   DGG+MR+LCPG D R++R+  VLV VWFT+SYGTYGVATWNNQ+FAD+GLSNP+LCS +YSLS+LPGNV SI LVE+VGRK LLS SM LAA+AA++FALGSGSGAGV++SGACLFNAFSTCGWNALGVVSTEAFPTA+RVSGMGLVSAAGR+GSI AQF NGSLE NV +LL VTSGLTLVG +ASLLLP ETLG+ LD   P
Sbjct:  314 GRYDEMRIVMQRMTNAPVHLPSGL-VQHSSTRRPGPSFASAWQSWRRSLGGGLYQSASGIAPDQITETSSMINNPED---ELTRGSESSGTKD-QRDGGVMRILCPGNDARLQRATIVLVVVWFTLSYGTYGVATWNNQVFADIGLSNPYLCSVIYSLSDLPGNVASIFLVEQVGRKPLLSASMVLAAVAASVFALGSGSGAGVVISGACLFNAFSTCGWNALGVVSTEAFPTAARVSGMGLVSAAGRLGSIGAQFANGSLEGNVFLLLAVTSGLTLVGGLASLLLPGETLGVSLDGTTP 608
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BLAST of mRNA_H-canaliculatus_F_contig148.3643.1 vs. uniprot
Match: A0A6H5K971_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K971_9PHAE)

HSP 1 Score: 313 bits (801), Expect = 8.870e-104
Identity = 179/281 (63.70%), Postives = 211/281 (75.09%), Query Frame = 1 
Query:   19 MSAILERMTNAPVYLPPELAVKRRAVEEKWPDFRARWQSWRFSLGGGRYQSVSRSSPHESEESSAMISQEEDGAGFTCAGSTCGGDQEGHYDGGMMRVLCPGTDTRIRRSANVLVAVWFTISYGTYGVATWNNQLFADVGLSNPFLCSFVYSLSNLPGNVGSIVLVERVGRKRLLSTSMALAAMAATLFALGSGSGAGVIVSGACLFNAFSTCGWNALGVVSTEAFPTASRVSGMGLVSAAGRMGSIAAQFVNGSLEENVLVLLMVTSGLTLVGSVASLLL 861
            M A+L+RMTNAPV+LP    V+ R+       F                   +R +P +  E+SAMI+  ED  G    GS     Q+   DGG+MR+LCPG D R++R+  VLV VWFT+SYG+YGVATWNNQ+FAD+GLSNP+LCS +YSLS+LPGNV SI  VERVGRK LLS SM LAA+A ++FALGSGSGAGV+VSGACLFNAFSTCGWNALGVVSTEAFPTA+RVSGMGLVSAAGR+GSI AQF NGSLE NV +LL+VTSGLTLVG +ASLLL
Sbjct:    1 MRAVLQRMTNAPVHLPSGF-VQHRSTRRPGLSF-------------------ARIAPDQITETSAMINNPEDEIG---RGSESSSTQD-QRDGGVMRILCPGNDARLQRATIVLVVVWFTLSYGSYGVATWNNQVFADIGLSNPYLCSVIYSLSDLPGNVASIFWVERVGRKPLLSVSMVLAAVAPSVFALGSGSGAGVVVSGACLFNAFSTCGWNALGVVSTEAFPTAARVSGMGLVSAAGRLGSIGAQFANGSLEGNVFLLLVVTSGLTLVGGLASLLL 257
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BLAST of mRNA_H-canaliculatus_F_contig148.3643.1 vs. uniprot
Match: D7G6U3_ECTSI (MFS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6U3_ECTSI)

HSP 1 Score: 293 bits (750), Expect = 1.690e-96
Identity = 162/230 (70.43%), Postives = 186/230 (80.87%), Query Frame = 1 
Query:  214 MISQEEDGAGFTCAGSTCGGDQEGHYDGGMMRVLCPGTDTRIRRSANVLVAVWFTISYGTYGVATWNNQLFADVGLSNPFLCSFVYSLSNLPGNVGSIVLVERVGRKRLLSTSMALAAMAATLFALGSGSGAGVIVSGACLFNAFSTCGWNALGVVSTEAFPTASRVSGMGLVSAAGRMGSIAAQFVNGSLEENVLVLLMVTSGLTLVGSVASLLLPRETLGLPLDDHDP 903
            MI+  ED  G    GS     Q+   DGG+MR+LCPG D R++R+  VLV VWFT+SYGT+GVATWNNQ+FAD+GLSNP+LCS +YSLS+LPGNV SI LVE+VGRK LLS SM LAA+AA++FALGSGSGA V+VSG CLFNAF TCGWNAL VVSTEAFPTA+RVSGMGLVSAAG +GSI AQF NGSLE NV +LL VTSGLTLVG +AS LLP ETLG+ LD   P
Sbjct:    1 MINNPEDEIG---RGSESSSTQD-QRDGGVMRILCPGNDARLQRATIVLVVVWFTLSYGTFGVATWNNQVFADIGLSNPYLCSVIYSLSDLPGNVASIFLVEQVGRKPLLSASMVLAAVAASVFALGSGSGAAVVVSG-CLFNAFITCGWNALDVVSTEAFPTAARVSGMGLVSAAGTLGSIGAQFANGSLEGNVFLLLAVTSGLTLVGGLASFLLPGETLGVSLDGTTP 225
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BLAST of mRNA_H-canaliculatus_F_contig148.3643.1 vs. uniprot
Match: A0A835YPW8_9STRA (Major facilitator superfamily domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPW8_9STRA)

HSP 1 Score: 211 bits (536), Expect = 3.990e-60
Identity = 116/200 (58.00%), Postives = 143/200 (71.50%), Query Frame = 1 
Query:  301 MMRVLCPGTDTRIRRSANVLVAVWFTISYGTYGVATWNNQLFADVGLSNPFLCSFVYSLSNLPGNVGSIVLVERVGRKRLLSTSMALAAMAATLFALGSGSGAGVIVSGACLFNAFSTCGWNALGVVSTEAFPTASRVSGMGLVSAAGRMGSIAAQFVNGSLEENVLVLLMVTSGLTLVGSVASLLLPRETLGLPLDDHD 900
            ++R+  P T     R+  VL+A WF +SYG+YG++TWN  LFAD+GL NPF  SFVY+L NLPGNV SI+ VERVGR+R+L  SMA AA AA LFALG+  GA ++V  A  FNA S  GWN L  +S E+FPT  R SGMGLV+A GR GS+AAQ VNG LE +V +LL+VTSGL L G+ A+ LLPRET G  L + D
Sbjct:  368 LLRLFVPPT----ARTTYVLMATWFALSYGSYGISTWNATLFADIGLGNPFASSFVYALGNLPGNVVSILYVERVGRRRMLCVSMAGAAAAAALFALGTRGGAALVVGAATTFNALSVAGWNCLDCLSAESFPTGVRASGMGLVAACGRAGSVAAQLVNGRLERDVPLLLLVTSGLMLAGAGAAALLPRETAGRALQEGD 563
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BLAST of mRNA_H-canaliculatus_F_contig148.3643.1 vs. uniprot
Match: A0A6H5K925_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K925_9PHAE)

HSP 1 Score: 175 bits (444), Expect = 1.280e-50
Identity = 94/169 (55.62%), Postives = 117/169 (69.23%), Query Frame = 1 
Query:   19 MSAILERMTNAPVYLPPELAVKRRAVEEKWPDFRARWQSWRFSLGGGRYQSVSRSSPHESEESSAMISQEEDGAGFTCAGSTCGGDQEGHYDGGMMRVLCPGTDTRIRRSANVLVAVWFTISYGTYGVATWNNQLFADVGLSNPFLCSFVYSLSNLPGNVGSIVLVERV 525
            M A+L+RMTNAPV+LP    V+ R+       F +  QSWR SLGGG YQS    +P +  E SAMI+  ED  G     S+     +   DGG+MR+LCPG D R++R+  VLV VWFT+SYG+YGVATWNNQ+FAD+GLSNP+LCS +YSLS+LPGNV SI  VERV
Sbjct:    1 MRAVLQRMTNAPVHLPSGF-VQHRSTTRPGLSFASVPQSWRCSLGGGLYQSAPGIAPDQITEISAMINNPEDEIGRGSESSST----KDQRDGGVMRILCPGNDARLQRATIVLVVVWFTLSYGSYGVATWNNQVFADIGLSNPYLCSVIYSLSDLPGNVASIFWVERV 164
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BLAST of mRNA_H-canaliculatus_F_contig148.3643.1 vs. uniprot
Match: A0A7S3HJH3_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HJH3_9STRA)

HSP 1 Score: 179 bits (454), Expect = 5.880e-49
Identity = 92/184 (50.00%), Postives = 137/184 (74.46%), Query Frame = 1 
Query:  343 RSANVLVAVWFTISYGTYGVATWNNQLFADVGLSNPFLCSFVYSLSNLPGNVGSIVLVERVGRKRLLSTSMALAAMAATLFALGSGSGAGVIVSGACLFNAFSTCGWNALGVVSTEAFPTASRVSGMGLVSAAGRMGSIAAQFVNGSLEENVLVLLMVTSGLTLVGSVASLLLPRETLGLPLDD 894
            R++ +L+ +WFT+S+G+YG++TW + LFADVG+ NP+  +F+++L+NLPGN+ S++ +E+ GR+ LLS  M LA  +A  FAL +   A V+V  A LFNAFS  GWN+L  +S E FPT  R S MG+++A GR+G+++AQFVNGSLE+N+ +LL VTS  T+VG +A+ LLP++T G  + D
Sbjct:  268 RTSLILLVIWFTLSFGSYGLSTWISTLFADVGIGNPYAAAFIFALANLPGNIVSLLYIEKYGRRVLLSAGMCLAGASALGFALNTAD-AFVVVLCAALFNAFSVIGWNSLDCLSVECFPTHVRTSAMGVLAAGGRLGAMSAQFVNGSLEQNIPLLLFVTSACTVVGGLAAWLLPKDTAGRAMSD 450
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BLAST of mRNA_H-canaliculatus_F_contig148.3643.1 vs. uniprot
Match: A0A4D9D2N9_9STRA (MFS domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D2N9_9STRA)

HSP 1 Score: 169 bits (427), Expect = 9.200e-45
Identity = 90/178 (50.56%), Postives = 124/178 (69.66%), Query Frame = 1 
Query:  358 LVAVWFTISYGTYGVATWNNQLFADVGLSNPFLCSFVYSLSNLPGNVGSIVLVERVGRKRLLSTSMALAAMAATLFALGSGSGAGVIVSGACLFNAFSTCGWNALGVVSTEAFPTASRVSGMGLVSAAGRMGSIAAQFVNGSLEENVLVLLMVTSGLTLVGSVASLLLPRETLGLPLD 891
            L+ VWFT+ +GTYG++TW + +F  +G+ N FL +F+++L+NLPGN+ S VL+ER+GRKRLL+ SM LAA +A +FA  S     + V  AC F AFS  GWNAL  +STE+FPTA R +GMGL+S  GR  S+ A FV+GSLE +V +L  VT   T++G++ +  LP E  G  LD
Sbjct:  320 LMVVWFTLCFGTYGLSTWISTIFKVIGIKNEFLPTFLFALANLPGNIASFVLIERLGRKRLLAFSMLLAAGSAFVFAFTSTRATWLAVVAACCFQAFSVAGWNALDALSTESFPTAMRTTGMGLLSGTGRFSSLIAMFVDGSLEHSVALLFTVTGTTTVLGALTAFWLPYEPTGQSLD 497
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BLAST of mRNA_H-canaliculatus_F_contig148.3643.1 vs. uniprot
Match: A0A482T2B5_9ARCH (MFS transporter n=1 Tax=archaeon TaxID=1906665 RepID=A0A482T2B5_9ARCH)

HSP 1 Score: 166 bits (420), Expect = 6.150e-44
Identity = 88/183 (48.09%), Postives = 131/183 (71.58%), Query Frame = 1 
Query:  331 TRIRRSANVLVAVWFTISYGTYGVATWNNQLFADVGLSNPFLCSFVYSLSNLPGNVGSIVLVERVGRKRLLSTSMALAAMAATLFALGSGSGAGVIVSGACLFNAFSTCGWNALGVVSTEAFPTASRVSGMGLVSAAGRMGSIAAQFVNGSLEENVLVLLMVTSGLTLVGSVASLLLPRETLG 879
            + ++ ++ V + VWFT+S+G+YG++TW + LF DVG+ NPF  +F+++L+NLPGNV S+ L++  GR+ LLS  MALA +++  FAL +   A V+V  A LFNAFST GWN+L  +S E FPT +R + MGL++A+GR+G+I+ QFVNGSLE N+ +LL VT+   L G   +  LP ++ G
Sbjct:  278 SELKFTSIVFMGVWFTLSFGSYGISTWISVLFEDVGIGNPFAAAFIFALANLPGNVISLWLIDTYGRRLLLSWGMALAGLSSLGFALDT-KDAAVVVLFAALFNAFSTMGWNSLDCLSAEMFPTRARSTAMGLLAASGRLGAISGQFVNGSLENNIPLLLFVTTACCLFGGCIAFALPHDSAG 459
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BLAST of mRNA_H-canaliculatus_F_contig148.3643.1 vs. uniprot
Match: A0A225WUC3_9STRA (Synaptic vesicle glycoprotein 2A n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WUC3_9STRA)

HSP 1 Score: 154 bits (388), Expect = 1.890e-39
Identity = 86/183 (46.99%), Postives = 130/183 (71.04%), Query Frame = 1 
Query:  328 DTRIRRSANVLVAVWFTISYGTYGVATWNNQLFADVGLSNPFLCSFVYSLSNLPGNVGSIVLVERVGRKRLLSTSMALAAMAATLFALGSGSGAGV--IVSGACLFNAFSTCGWNALGVVSTEAFPTASRVSGMGLVSAAGRMGSIAAQFVNGSL---EENVLVLLMVTSGLTLVGSVASLLL 861
            D  +R +   L+  WF +S+G+YG+ATW   LF  +GL NPF  +F+Y+ +NLPGN+ + +L++R+G +R+L+ SM L+A  AT FA  + S +GV  IV  A  +NAFST GWNA+ ++S E+FPT  R +GMG++SA GR GS+AAQFVNG L     +V +LL++T+ + L+GS++S+L+
Sbjct:  279 DPVLRATTISLLMSWFCLSFGSYGLATWITMLFMRIGLENPFANAFIYAAANLPGNIMTALLLDRLGGRRILAISMLLSAGCATGFAYANSSASGVASIVLLASGYNAFSTAGWNAIDLMSAESFPTDIRTTGMGMLSAVGRAGSVAAQFVNGYLIGPPVHVTLLLVITASMMLIGSISSVLV 461
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BLAST of mRNA_H-canaliculatus_F_contig148.3643.1 vs. uniprot
Match: W2QKP3_PHYPN (MFS domain-containing protein n=17 Tax=Phytophthora TaxID=4783 RepID=W2QKP3_PHYPN)

HSP 1 Score: 153 bits (386), Expect = 4.460e-39
Identity = 88/183 (48.09%), Postives = 128/183 (69.95%), Query Frame = 1 
Query:  328 DTRIRRSANVLVAVWFTISYGTYGVATWNNQLFADVGLSNPFLCSFVYSLSNLPGNVGSIVLVERVGRKRLLSTSMALAAMAATLFALG--SGSGAGVIVSGACLFNAFSTCGWNALGVVSTEAFPTASRVSGMGLVSAAGRMGSIAAQFVNGSL---EENVLVLLMVTSGLTLVGSVASLLL 861
            D  +R +   L+  WF +S+G+YG+ATW   LF  +GL NPF  +F+Y+ +NLPGN+ + +L++R+G +R+L+ SM L+A  AT FA    S SGA  IV  A  FNAFST GWNA+ ++S E+FPT  R +GMG +SAAGR GS+AAQFVNG L     +V +LL +T+ + L+G+++S+L+
Sbjct:  293 DPVLRGTTISLLMSWFCLSFGSYGLATWITMLFKRIGLENPFANAFIYAAANLPGNIMTALLMDRLGGRRILAISMLLSAGCATGFAYANSSASGAATIVLLASGFNAFSTAGWNAIDLMSAESFPTDVRTTGMGTLSAAGRAGSVAAQFVNGYLIGPPVHVTLLLAITASMMLLGTISSVLV 475
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig148.3643.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6U5_ECTSI1.080e-12267.33MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K971_9PHAE8.870e-10463.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G6U3_ECTSI1.690e-9670.43MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835YPW8_9STRA3.990e-6058.00Major facilitator superfamily domain-containing pr... [more]
A0A6H5K925_9PHAE1.280e-5055.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3HJH3_9STRA5.880e-4950.00Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A4D9D2N9_9STRA9.200e-4550.56MFS domain-containing protein n=2 Tax=Monodopsidac... [more]
A0A482T2B5_9ARCH6.150e-4448.09MFS transporter n=1 Tax=archaeon TaxID=1906665 Rep... [more]
A0A225WUC3_9STRA1.890e-3946.99Synaptic vesicle glycoprotein 2A n=1 Tax=Phytophth... [more]
W2QKP3_PHYPN4.460e-3948.09MFS domain-containing protein n=17 Tax=Phytophthor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig148contigH-canaliculatus_F_contig148:59030..60083 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score369.4
Seed ortholog evalue1.6e-99
Seed eggNOG ortholog2880.D7G6U5
Preferred nameSV2A
KEGG koko:K06258
KEGG TC2.A.1.22
KEGG Pathwayko04512,map04512
GOsGO:0003674,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005886,GO:0005911,GO:0006810,GO:0006836,GO:0006873,GO:0006874,GO:0006875,GO:0007154,GO:0007267,GO:0007268,GO:0008021,GO:0008150,GO:0009987,GO:0012505,GO:0012506,GO:0014052,GO:0016020,GO:0016021,GO:0019725,GO:0019899,GO:0019900,GO:0019901,GO:0023052,GO:0030003,GO:0030054,GO:0030133,GO:0030285,GO:0030424,GO:0030425,GO:0030658,GO:0030659,GO:0030672,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031410,GO:0031594,GO:0031982,GO:0032879,GO:0032890,GO:0033267,GO:0036477,GO:0042592,GO:0042995,GO:0043005,GO:0043025,GO:0043195,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043269,GO:0043679,GO:0044070,GO:0044297,GO:0044306,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044444,GO:0044446,GO:0044456,GO:0044463,GO:0044464,GO:0045202,GO:0048786,GO:0048878,GO:0050789,GO:0050801,GO:0051046,GO:0051049,GO:0051179,GO:0051234,GO:0051588,GO:0051952,GO:0051955,GO:0055065,GO:0055074,GO:0055080,GO:0055082,GO:0065007,GO:0065008,GO:0070382,GO:0071944,GO:0072503,GO:0072507,GO:0097447,GO:0097458,GO:0097708,GO:0098563,GO:0098588,GO:0098771,GO:0098793,GO:0098805,GO:0098916,GO:0099501,GO:0099503,GO:0099536,GO:0099537,GO:0120025,GO:0120038,GO:0150034
EggNOG free text desc.solute carrier family 22
EggNOG OGsKOG0255@1,KOG0255@2759
COG Functional cat.GM
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Hectar predicted targeting categoryother localisation
Exons2
Model size927
Cds size909
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig148.3643.1prot_H-canaliculatus_F_contig148.3643.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig148 59030..60065 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929224.567842-CDS-H-canaliculatus_F_contig148:59029..594341622929224.567842-CDS-H-canaliculatus_F_contig148:59029..59434Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig148 59030..59434 -
1696845724.5743577-CDS-H-canaliculatus_F_contig148:59029..594341696845724.5743577-CDS-H-canaliculatus_F_contig148:59029..59434Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig148 59030..59434 -
1622929224.5790813-CDS-H-canaliculatus_F_contig148:59561..600651622929224.5790813-CDS-H-canaliculatus_F_contig148:59561..60065Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig148 59562..60065 -
1696845724.5898497-CDS-H-canaliculatus_F_contig148:59561..600651696845724.5898497-CDS-H-canaliculatus_F_contig148:59561..60065Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig148 59562..60065 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929224.5889208-UTR-H-canaliculatus_F_contig148:60065..600831622929224.5889208-UTR-H-canaliculatus_F_contig148:60065..60083Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig148 60066..60083 -
1696845724.6070335-UTR-H-canaliculatus_F_contig148:60065..600831696845724.6070335-UTR-H-canaliculatus_F_contig148:60065..60083Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig148 60066..60083 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig148.3643.1

>prot_H-canaliculatus_F_contig148.3643.1 ID=prot_H-canaliculatus_F_contig148.3643.1|Name=mRNA_H-canaliculatus_F_contig148.3643.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=303bp
MSAILERMTNAPVYLPPELAVKRRAVEEKWPDFRARWQSWRFSLGGGRYQ
SVSRSSPHESEESSAMISQEEDGAGFTCAGSTCGGDQEGHYDGGMMRVLC
PGTDTRIRRSANVLVAVWFTISYGTYGVATWNNQLFADVGLSNPFLCSFV
YSLSNLPGNVGSIVLVERVGRKRLLSTSMALAAMAATLFALGSGSGAGVI
VSGACLFNAFSTCGWNALGVVSTEAFPTASRVSGMGLVSAAGRMGSIAAQ
FVNGSLEENVLVLLMVTSGLTLVGSVASLLLPRETLGLPLDDHDPPPKQA
GA*
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mRNA from alignment at H-canaliculatus_F_contig148:59030..60083-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig148.3643.1 ID=mRNA_H-canaliculatus_F_contig148.3643.1|Name=mRNA_H-canaliculatus_F_contig148.3643.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1054bp|location=Sequence derived from alignment at H-canaliculatus_F_contig148:59030..60083- (Hapterophycus canaliculatus Oshoro5f female)
GCAGGCCGATACGTCGAAATGAGCGCCATCCTCGAGCGTATGACGAACGC
TCCCGTGTACCTGCCGCCAGAACTGGCGGTCAAGCGAAGAGCCGTCGAAG
AGAAATGGCCCGACTTCAGGGCACGATGGCAGTCCTGGCGCTTCAGCTTG
GGGGGGGGGCGGTATCAGAGCGTATCTCGGAGCTCGCCCCACGAAAGCGA
AGAATCCTCAGCCATGATAAGCCAGGAGGAGGACGGCGCTGGGTTCACCT
GCGCTGGGTCCACTTGCGGAGGGGATCAAGAGGGACACTACGATGGGGGG
ATGATGCGAGTCCTCTGCCCGGGAACAGACACGAGAATCCGAAGATCGGC
GAACGTGTTGGTCGCTGTGTGGTTCACCATCAGCTACGGCACGTACGGAG
TGGCGACATGGAACAATCAGCTCTTCGCCGACGTCGGACTATCGAATCCG
TTCCTCTGCTCTTTCGTCTACTCCCTGTCCAACCTTCCAGGGAATGTGGG
GTCCATCGTTTTGGTTGAACGGGTAAGTCCTGTCAAGTTCTTACGGAGCA
CAAGCCTGCTGAAGCATCGACGCTGAGCTTGTCAAACACACGCCTCGAAC
CGTCTCCTCACTCTCTGACCATCCCATAATGATCCTTTCAAAACTGCAGG
TTGGCCGCAAACGCCTGCTGTCAACATCCATGGCATTGGCAGCGATGGCG
GCCACCCTTTTCGCCCTGGGGTCTGGATCAGGGGCGGGGGTAATCGTTTC
TGGTGCTTGCCTATTCAACGCGTTCAGCACGTGTGGATGGAACGCCCTGG
GTGTCGTCTCGACAGAGGCGTTTCCTACAGCGTCGAGGGTATCGGGGATG
GGATTGGTGTCAGCGGCCGGGAGAATGGGTTCGATCGCAGCCCAGTTTGT
CAATGGTTCTTTGGAGGAAAATGTCCTCGTTCTCCTGATGGTGACGAGCG
GGTTGACGTTAGTGGGGAGTGTGGCGTCTCTGCTTCTCCCTCGAGAGACC
CTCGGCTTACCTCTCGATGACCATGACCCACCACCAAAGCAGGCAGGGGC
GTAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig148:59030..60083-

>mRNA_H-canaliculatus_F_contig148.3643.1 ID=mRNA_H-canaliculatus_F_contig148.3643.1|Name=mRNA_H-canaliculatus_F_contig148.3643.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1818bp|location=Sequence derived from alignment at H-canaliculatus_F_contig148:59030..60083- (Hapterophycus canaliculatus Oshoro5f female)
ATGAGCGCCATCCTCGAGCGTATGACGAACGCTCCCGTGTACCTGCCGCC
AGAACTGGCGGTCAAGCGAAGAGCCGTCGAAGAGAAATGGCCCGACTTCA
GGGCACGATGGCAGTCCTGGCGCTTCAGCTTGGGGGGGGGGCGGTATCAG
AGCGTATCTCGGAGCTCGCCCCACGAAAGCGAAGAATCCTCAGCCATGAT
AAGCCAGGAGGAGGACGGCGCTGGGTTCACCTGCGCTGGGTCCACTTGCG
GAGGGGATCAAGAGGGACACTACGATGGGGGGATGATGCGAGTCCTCTGC
CCGGGAACAGACACGAGAATCCGAAGATCGGCGAACGTGTTGGTCGCTGT
GTGGTTCACCATCAGCTACGGCACGTACGGAGTGGCGACATGGAACAATC
AGCTCTTCGCCGACGTCGGACTATCGAATCCGTTCCTCTGCTCTTTCGTC
TACTCCCTGTCCAACCTTCCAGGGAATGTGGGGTCCATCGTTTTGGTTGA
ACGGATGAGCGCCATCCTCGAGCGTATGACGAACGCTCCCGTGTACCTGC
CGCCAGAACTGGCGGTCAAGCGAAGAGCCGTCGAAGAGAAATGGCCCGAC
TTCAGGGCACGATGGCAGTCCTGGCGCTTCAGCTTGGGGGGGGGGCGGTA
TCAGAGCGTATCTCGGAGCTCGCCCCACGAAAGCGAAGAATCCTCAGCCA
TGATAAGCCAGGAGGAGGACGGCGCTGGGTTCACCTGCGCTGGGTCCACT
TGCGGAGGGGATCAAGAGGGACACTACGATGGGGGGATGATGCGAGTCCT
CTGCCCGGGAACAGACACGAGAATCCGAAGATCGGCGAACGTGTTGGTCG
CTGTGTGGTTCACCATCAGCTACGGCACGTACGGAGTGGCGACATGGAAC
AATCAGCTCTTCGCCGACGTCGGACTATCGAATCCGTTCCTCTGCTCTTT
CGTCTACTCCCTGTCCAACCTTCCAGGGAATGTGGGGTCCATCGTTTTGG
TTGAACGGGTTGGCCGCAAACGCCTGCTGTCAACATCCATGGCATTGGCA
GCGATGGCGGCCACCCTTTTCGCCCTGGGGTCTGGATCAGGGGCGGGGGT
AATCGTTTCTGGTGCTTGCCTATTCAACGCGTTCAGCACGTGTGGATGGA
ACGCCCTGGGTGTCGTCTCGACAGAGGCGTTTCCTACAGCGTCGAGGGTA
TCGGGGATGGGATTGGTGTCAGCGGCCGGGAGAATGGGTTCGATCGCAGC
CCAGTTTGTCAATGGTTCTTTGGAGGAAAATGTCCTCGTTCTCCTGATGG
TGACGAGCGGGTTGACGTTAGTGGGGAGTGTGGCGTCTCTGCTTCTCCCT
CGAGAGACCCTCGGCTTACCTCTCGATGACCATGACCCACCACCAAAGCA
GGCAGGGGCGTAGGTTGGCCGCAAACGCCTGCTGTCAACATCCATGGCAT
TGGCAGCGATGGCGGCCACCCTTTTCGCCCTGGGGTCTGGATCAGGGGCG
GGGGTAATCGTTTCTGGTGCTTGCCTATTCAACGCGTTCAGCACGTGTGG
ATGGAACGCCCTGGGTGTCGTCTCGACAGAGGCGTTTCCTACAGCGTCGA
GGGTATCGGGGATGGGATTGGTGTCAGCGGCCGGGAGAATGGGTTCGATC
GCAGCCCAGTTTGTCAATGGTTCTTTGGAGGAAAATGTCCTCGTTCTCCT
GATGGTGACGAGCGGGTTGACGTTAGTGGGGAGTGTGGCGTCTCTGCTTC
TCCCTCGAGAGACCCTCGGCTTACCTCTCGATGACCATGACCCACCACCA
AAGCAGGCAGGGGCGTAG
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