mRNA_H-canaliculatus_F_contig1479.3636.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1479.3636.1
Unique NamemRNA_H-canaliculatus_F_contig1479.3636.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1479.3636.1 vs. uniprot
Match: A0A6H5KC60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC60_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 1.100e-19
Identity = 50/93 (53.76%), Postives = 62/93 (66.67%), Query Frame = 2 
Query:   23 RAENTALHASRPLDSTRDDVDVLRFRNAPKLAIVSFAAEPRLLPDNRATNDHMRKVLHHLHTNIHPEGTMALVVPQPWHVHSPRLYRESNCLT 301
            R EN  LH + PLD T  DVD L FRNAPKL IVS  AE RLL  + ATN H+R+V+ ++   +HP+GT+ALVVP PW  H  RL  +S  L+
Sbjct:  383 RDENATLHDTVPLDPTGSDVDKLSFRNAPKLVIVSIGAEQRLLKTSEATNTHLRRVIDNVRGRMHPDGTIALVVPHPWSAHFHRLQGDSTFLS 475
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BLAST of mRNA_H-canaliculatus_F_contig1479.3636.1 vs. uniprot
Match: A0A6H5LBJ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBJ9_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 1.860e-18
Identity = 49/85 (57.65%), Postives = 58/85 (68.24%), Query Frame = 2 
Query:   23 RAENTALHASRPLDSTRDDVDVLRFRNAPKLAIVSFAAEPRLLPDNRATNDHMRKVLHHLHTNIHPEGTMALVVPQPWHVHSPRL 277
            R ENT LH   PLD T  DVD L FRNAPKL IVS  AE RLL  + ATN H+R+V+ ++   +HP+GT+ALVVP PW  H  RL
Sbjct:  325 RDENTTLHDIVPLDPTGSDVDKLSFRNAPKLVIVSIGAEQRLLRTSEATNTHLRRVIDNVRGRMHPDGTIALVVPHPWSAHFHRL 409
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1479.3636.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KC60_9PHAE1.100e-1953.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LBJ9_9PHAE1.860e-1857.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1479contigH-canaliculatus_F_contig1479:12289..13581 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1295
Cds size366
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929221.9147713-UTR-H-canaliculatus_F_contig1479:12288..132151622929221.9147713-UTR-H-canaliculatus_F_contig1479:12288..13215Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1479 12289..13215 +
1696845723.8045797-UTR-H-canaliculatus_F_contig1479:12288..132151696845723.8045797-UTR-H-canaliculatus_F_contig1479:12288..13215Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1479 12289..13215 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929221.9262834-CDS-H-canaliculatus_F_contig1479:13215..135811622929221.9262834-CDS-H-canaliculatus_F_contig1479:13215..13581Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1479 13216..13581 +
1696845723.8132834-CDS-H-canaliculatus_F_contig1479:13215..135811696845723.8132834-CDS-H-canaliculatus_F_contig1479:13215..13581Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1479 13216..13581 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1479.3636.1prot_H-canaliculatus_F_contig1479.3636.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1479 13216..13581 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1479.3636.1

>prot_H-canaliculatus_F_contig1479.3636.1 ID=prot_H-canaliculatus_F_contig1479.3636.1|Name=mRNA_H-canaliculatus_F_contig1479.3636.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=122bp
MAGAISEAGVGLTLERNPLMLKYATAGSGRPATGTEHYLRSNMDMILLVH
ATGTSFTCNRRVTVDDIFGHRDDAASSATQCTGDLDNGDATNDIPLRALH
FLVNRSGPLRTTLSYMTDELLR
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mRNA from alignment at H-canaliculatus_F_contig1479:12289..13581+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1479.3636.1 ID=mRNA_H-canaliculatus_F_contig1479.3636.1|Name=mRNA_H-canaliculatus_F_contig1479.3636.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1293bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1479:12289..13581+ (Hapterophycus canaliculatus Oshoro5f female)
ACCGTGTGTGTGATGACCGCCCAGGGCCGAAAATACGGCGCTGCACGCTT
CTCGCCCTCTCGACTCCACGCGGGACGACGTCGACGTGCTCCGCTTTCGA
AACGCTCCGAAGCTGGCCATCGTGTCATTCGCCGCAGAGCCGAGACTCCT
CCCCGACAACCGCGCGACCAACGACCATATGCGGAAGGTTCTACACCATC
TGCACACTAACATACACCCCGAGGGTACCATGGCACTGGTCGTGCCCCAA
CCGTGGCATGTGCACTCGCCCCGCCTCTACCGTGAGTCGAATTGTCTTAC
GGCACCTACGTTTCTGTCCTGCGTTCGTCATGGCCTGGTCGACTTGGAGC
TGAAACCGGCAGAGCGGCACGATTAGAGTGAGACCCGTCCTTGCTTCTGG
CAGCATTCTGTCATCTCAAGTTTCTCCCTTACGTTCAGATAACTTTACCA
CGTCTTCTGCTACCGGTGAGAGCATTTTGAATGGCACGGACATCCGCAGG
TGTAAAGAAATCGCAGAACTGAGGCTCCGTAGGTCTGACGCACACCCTAA
CTCGACCCGCAGACCTTGTGGGAGTGGGGGGGGAATGGCTGCGAATGTGA
CGCACCAACCGGTCTGCTCGAAACGCAACACCCGCCGGTACACGCTAGCG
GGTCGCTTCTCCGAAGTGCCGACCTTCCCTGCCGTACCAGATCGCTCCCT
CGCGAAATTTTCTACGTCGACACTACAGACAAGCGTTCGAAGACTCCATT
TGGCGAAAAAATCAGTTCTCGCAGACCCGATATGGTCGCATGCGCTGCTT
TCTCTCTTCGTCTTGTGGCCGCATGGCATTTTTCTCTCCCCCTCGGTCGT
TGCCTCCATTACAATGCGTGGCTGTCCGTGAACCTTCTACTATCTGTGGT
TGAGGATAACGTACTTCAAATGTTTCGATGGCAGGGGCGATTTCGGAGGC
GGGCGTCGGACTTACCCTGGAGCGTAATCCCCTCATGCTGAAGTACGCCA
CAGCCGGGAGCGGTCGCCCCGCCACGGGCACCGAACATTATCTCAGAAGC
AACATGGATATGATCCTTCTGGTACACGCGACAGGAACTTCGTTTACCTG
CAACAGACGCGTGACTGTTGACGACATATTTGGCCATAGGGACGACGCCG
CCTCTTCGGCGACGCAATGCACGGGCGACCTCGATAACGGAGATGCCACC
AACGACATACCTTTGAGGGCGCTCCATTTCCTTGTTAACAGGTCGGGCCC
GTTACGCACGACGTTGTCGTACATGACGGACGAGCTTTTGCGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1479:12289..13581+

>mRNA_H-canaliculatus_F_contig1479.3636.1 ID=mRNA_H-canaliculatus_F_contig1479.3636.1|Name=mRNA_H-canaliculatus_F_contig1479.3636.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=732bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1479:12289..13581+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGCAGGGGCGATTTCGGAGGCGGGCGTCGGACTTACCCTGGAGCGTAA
TCCCCTCATGCTGAAGTACGCCACAGCCGGGAGCGGTCGCCCCGCCACGG
GCACCGAACATTATCTCAGAAGCAACATGGATATGATCCTTCTGGTACAC
GCGACAGGAACTTCGTTTACCTGCAACAGACGCGTGACTGTTGACGACAT
ATTTGGCCATAGGGACGACGCCGCCTCTTCGGCGACGCAATGCACGGGCG
ACCTCGATAACGGAGATGCCACCAACGACATACCTTTGAGGGCGCTCCAT
TTCCTTGTTAACAGGTCGGGCCCGTTACGCACGACGTTGTCGTACATGAC
GGACGAGCTTTTGCGAATGGCAGGGGCGATTTCGGAGGCGGGCGTCGGAC
TTACCCTGGAGCGTAATCCCCTCATGCTGAAGTACGCCACAGCCGGGAGC
GGTCGCCCCGCCACGGGCACCGAACATTATCTCAGAAGCAACATGGATAT
GATCCTTCTGGTACACGCGACAGGAACTTCGTTTACCTGCAACAGACGCG
TGACTGTTGACGACATATTTGGCCATAGGGACGACGCCGCCTCTTCGGCG
ACGCAATGCACGGGCGACCTCGATAACGGAGATGCCACCAACGACATACC
TTTGAGGGCGCTCCATTTCCTTGTTAACAGGTCGGGCCCGTTACGCACGA
CGTTGTCGTACATGACGGACGAGCTTTTGCGA
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