mRNA_H-canaliculatus_F_contig14779.3629.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14779.3629.1
Unique NamemRNA_H-canaliculatus_F_contig14779.3629.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14779.3629.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14779contigH-canaliculatus_F_contig14779:24..378 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size355
Cds size324
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929221.3487203-UTR-H-canaliculatus_F_contig14779:23..541622929221.3487203-UTR-H-canaliculatus_F_contig14779:23..54Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14779 24..54 +
1696845723.4626904-UTR-H-canaliculatus_F_contig14779:23..541696845723.4626904-UTR-H-canaliculatus_F_contig14779:23..54Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14779 24..54 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929221.3638914-CDS-H-canaliculatus_F_contig14779:54..3781622929221.3638914-CDS-H-canaliculatus_F_contig14779:54..378Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14779 55..378 +
1696845723.4788575-CDS-H-canaliculatus_F_contig14779:54..3781696845723.4788575-CDS-H-canaliculatus_F_contig14779:54..378Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14779 55..378 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14779.3629.1prot_H-canaliculatus_F_contig14779.3629.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14779 55..378 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14779.3629.1

>prot_H-canaliculatus_F_contig14779.3629.1 ID=prot_H-canaliculatus_F_contig14779.3629.1|Name=mRNA_H-canaliculatus_F_contig14779.3629.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=108bp
MALLSFHYFGQEKEPGSTTVGIRTAAVLSFCSRAETRSQRKKASVTPVMV
CVRRLFFKVRSDALSVGSFNIAGSTWRVSYPFRFPGPHVHMDRACFLWLR
ISAVHFP*
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mRNA from alignment at H-canaliculatus_F_contig14779:24..378+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14779.3629.1 ID=mRNA_H-canaliculatus_F_contig14779.3629.1|Name=mRNA_H-canaliculatus_F_contig14779.3629.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=355bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14779:24..378+ (Hapterophycus canaliculatus Oshoro5f female)
CCGGTTTATCTCCGGCCAGTTCGCCAGCGACATGGCATTATTATCATTTC
ATTATTTCGGCCAAGAGAAGGAACCTGGGTCAACAACTGTCGGTATAAGA
ACTGCTGCTGTACTTTCCTTTTGTTCCCGAGCTGAAACTCGGAGTCAAAG
AAAAAAAGCGAGTGTCACTCCTGTCATGGTGTGCGTCCGGAGATTGTTTT
TCAAGGTGCGATCCGACGCATTGTCAGTTGGTTCTTTTAACATCGCAGGA
TCGACGTGGAGGGTATCGTATCCGTTTCGATTTCCAGGTCCACATGTCCA
CATGGATCGTGCCTGCTTCTTATGGCTGAGGATATCCGCTGTCCATTTCC
CATGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14779:24..378+

>mRNA_H-canaliculatus_F_contig14779.3629.1 ID=mRNA_H-canaliculatus_F_contig14779.3629.1|Name=mRNA_H-canaliculatus_F_contig14779.3629.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=648bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14779:24..378+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGCATTATTATCATTTCATTATTTCGGCCAAGAGAAGGAACCTGGGTC
AACAACTGTCGGTATAAGAACTGCTGCTGTACTTTCCTTTTGTTCCCGAG
CTGAAACTCGGAGTCAAAGAAAAAAAGCGAGTGTCACTCCTGTCATGGTG
TGCGTCCGGAGATTGTTTTTCAAGGTGCGATCCGACGCATTGTCAGTTGG
TTCTTTTAACATCGCAGGATCGACGTGGAGGGTATCGTATCCGTTTCGAT
TTCCAGGTCCACATGTCCACATGGATCGTGCCTGCTTCTTATGGCTGAGG
ATATCCGCTGTCCATTTCCCATGAATGGCATTATTATCATTTCATTATTT
CGGCCAAGAGAAGGAACCTGGGTCAACAACTGTCGGTATAAGAACTGCTG
CTGTACTTTCCTTTTGTTCCCGAGCTGAAACTCGGAGTCAAAGAAAAAAA
GCGAGTGTCACTCCTGTCATGGTGTGCGTCCGGAGATTGTTTTTCAAGGT
GCGATCCGACGCATTGTCAGTTGGTTCTTTTAACATCGCAGGATCGACGT
GGAGGGTATCGTATCCGTTTCGATTTCCAGGTCCACATGTCCACATGGAT
CGTGCCTGCTTCTTATGGCTGAGGATATCCGCTGTCCATTTCCCATGA
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