mRNA_H-canaliculatus_F_contig14775.3627.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14775.3627.1
Unique NamemRNA_H-canaliculatus_F_contig14775.3627.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14775.3627.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14775contigH-canaliculatus_F_contig14775:208..893 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size686
Cds size351
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14775.3627.1prot_H-canaliculatus_F_contig14775.3627.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14775 274..624 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929221.218821-UTR-H-canaliculatus_F_contig14775:207..2731622929221.218821-UTR-H-canaliculatus_F_contig14775:207..273Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14775 208..273 +
1696845723.4123702-UTR-H-canaliculatus_F_contig14775:207..2731696845723.4123702-UTR-H-canaliculatus_F_contig14775:207..273Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14775 208..273 +
1622929221.2543194-UTR-H-canaliculatus_F_contig14775:624..8931622929221.2543194-UTR-H-canaliculatus_F_contig14775:624..893Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14775 625..893 +
1696845723.435873-UTR-H-canaliculatus_F_contig14775:624..8931696845723.435873-UTR-H-canaliculatus_F_contig14775:624..893Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14775 625..893 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929221.237083-CDS-H-canaliculatus_F_contig14775:273..6241622929221.237083-CDS-H-canaliculatus_F_contig14775:273..624Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14775 274..624 +
1696845723.4224393-CDS-H-canaliculatus_F_contig14775:273..6241696845723.4224393-CDS-H-canaliculatus_F_contig14775:273..624Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14775 274..624 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14775.3627.1

>prot_H-canaliculatus_F_contig14775.3627.1 ID=prot_H-canaliculatus_F_contig14775.3627.1|Name=mRNA_H-canaliculatus_F_contig14775.3627.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=117bp
MSQHFTSTSFKRTCGAKHNRKLSRYSVLCLRGGYSSGVVGSSSMKKTTKK
DVAFTKARPKLNKGVLAPRTRRRKGWYDNQMCHSCVRTMERTLVVLFHVA
PVGRHRVCGTRGPSEA*
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mRNA from alignment at H-canaliculatus_F_contig14775:208..893+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14775.3627.1 ID=mRNA_H-canaliculatus_F_contig14775.3627.1|Name=mRNA_H-canaliculatus_F_contig14775.3627.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=686bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14775:208..893+ (Hapterophycus canaliculatus Oshoro5f female)
GCAAGCGAGTAGACAAAAAGATACCACCAACACAAAAAAACAACGTGGAC
GGAAGAGACACACGGAATGAGCCAACATTTCACCAGCACGTCGTTCAAAA
GGACTTGTGGGGCAAAACATAACAGAAAGCTGAGTCGCTACAGCGTGCTT
TGTCTGAGAGGAGGGTATTCCTCTGGGGTCGTTGGCTCTTCTTCCATGAA
AAAGACAACGAAGAAGGACGTGGCATTCACGAAGGCCCGACCGAAGCTCA
ACAAGGGAGTCCTCGCGCCACGGACAAGACGACGAAAAGGTTGGTATGAC
AATCAGATGTGCCACTCTTGTGTCCGAACCATGGAGCGTACCCTTGTCGT
TCTTTTCCACGTGGCCCCTGTGGGCCGCCACCGAGTGTGTGGGACGAGGG
GACCTAGCGAAGCTTGATCCGTCGCCAGCGGTTGCGGCCGTGGGCCATGC
GGGCACGAAAACCTGTACCCACTGCACTTCCTTCTAGCCAACCAGGTAGT
TGCCTCATATCAAAGATGCATATCCTCTAAACCGGCCGGGCAAGACAAGC
AAGCAAGCAGCATTGAACAATCACCGTTCACCCCGGTTGCCTTCGCCCTG
GGTCTTGGCAACAAGGGGAACCAAGCGACCGCACCCGCGACATCCCCGAG
GGACACAAATAGACAAAAATACAAGCGTAGAACGCG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14775:208..893+

>mRNA_H-canaliculatus_F_contig14775.3627.1 ID=mRNA_H-canaliculatus_F_contig14775.3627.1|Name=mRNA_H-canaliculatus_F_contig14775.3627.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=702bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14775:208..893+ (Hapterophycus canaliculatus Oshoro5f female)
ATGAGCCAACATTTCACCAGCACGTCGTTCAAAAGGACTTGTGGGGCAAA
ACATAACAGAAAGCTGAGTCGCTACAGCGTGCTTTGTCTGAGAGGAGGGT
ATTCCTCTGGGGTCGTTGGCTCTTCTTCCATGAAAAAGACAACGAAGAAG
GACGTGGCATTCACGAAGGCCCGACCGAAGCTCAACAAGGGAGTCCTCGC
GCCACGGACAAGACGACGAAAAGGTTGGTATGACAATCAGATGTGCCACT
CTTGTGTCCGAACCATGGAGCGTACCCTTGTCGTTCTTTTCCACGTGGCC
CCTGTGGGCCGCCACCGAGTGTGTGGGACGAGGGGACCTAGCGAAGCTTG
AATGAGCCAACATTTCACCAGCACGTCGTTCAAAAGGACTTGTGGGGCAA
AACATAACAGAAAGCTGAGTCGCTACAGCGTGCTTTGTCTGAGAGGAGGG
TATTCCTCTGGGGTCGTTGGCTCTTCTTCCATGAAAAAGACAACGAAGAA
GGACGTGGCATTCACGAAGGCCCGACCGAAGCTCAACAAGGGAGTCCTCG
CGCCACGGACAAGACGACGAAAAGGTTGGTATGACAATCAGATGTGCCAC
TCTTGTGTCCGAACCATGGAGCGTACCCTTGTCGTTCTTTTCCACGTGGC
CCCTGTGGGCCGCCACCGAGTGTGTGGGACGAGGGGACCTAGCGAAGCTT
GA
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