mRNA_H-canaliculatus_F_contig1477.3623.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1477.3623.1
Unique NamemRNA_H-canaliculatus_F_contig1477.3623.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1477.3623.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1477contigH-canaliculatus_F_contig1477:5167..5562 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size173
Cds size171
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929220.8588617-CDS-H-canaliculatus_F_contig1477:5166..52521622929220.8588617-CDS-H-canaliculatus_F_contig1477:5166..5252Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1477 5167..5252 +
1696845723.2684524-CDS-H-canaliculatus_F_contig1477:5166..52521696845723.2684524-CDS-H-canaliculatus_F_contig1477:5166..5252Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1477 5167..5252 +
1622929220.8726065-CDS-H-canaliculatus_F_contig1477:5476..55611622929220.8726065-CDS-H-canaliculatus_F_contig1477:5476..5561Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1477 5477..5561 +
1696845723.2821612-CDS-H-canaliculatus_F_contig1477:5476..55611696845723.2821612-CDS-H-canaliculatus_F_contig1477:5476..5561Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1477 5477..5561 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1477.3623.1prot_H-canaliculatus_F_contig1477.3623.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1477 5167..5561 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1477.3623.1

>prot_H-canaliculatus_F_contig1477.3623.1 ID=prot_H-canaliculatus_F_contig1477.3623.1|Name=mRNA_H-canaliculatus_F_contig1477.3623.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=57bp
IRRKHAGNEVRAHMDTSDDLPHVHVSLSRNGNAQREEKGRARNANQIIWN
GSEKKAT
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mRNA from alignment at H-canaliculatus_F_contig1477:5167..5562+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1477.3623.1 ID=mRNA_H-canaliculatus_F_contig1477.3623.1|Name=mRNA_H-canaliculatus_F_contig1477.3623.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=396bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1477:5167..5562+ (Hapterophycus canaliculatus Oshoro5f female)
ATCAGGCGCAAGCACGCTGGCAATGAAGTGCGCGCCCACATGGACACATC
GGACGACCTGCCGCATGTCCACGTGTCCCTCTCGAGGTCCGTGTCGGGAG
GCGTCATGTCTAGAATGTTGAGCTTCAGGCGTGCCGATTGGATGCGATTA
AGGGCGCTTTCATGCAGAGAGAGAGGAGATCCACTATCGTCGACGTTTCC
TCTAGTGACCAACTCGGCCTCGTACGACTGCGATGCGTCTATCTCCGCTC
TCAGCTCTTGCGACACCGACAAATAACACACCCATCATCGTGTTGGCGTT
AGCCGGACAGGAATGGAAACGCACAACGAGAGGAGAAGGGCCGTGCGAGA
AATGCAAACCAAATCATTTGGAACGGGTCAGAGAAGAAGGCAACAC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1477:5167..5562+

>mRNA_H-canaliculatus_F_contig1477.3623.1 ID=mRNA_H-canaliculatus_F_contig1477.3623.1|Name=mRNA_H-canaliculatus_F_contig1477.3623.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=342bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1477:5167..5562+ (Hapterophycus canaliculatus Oshoro5f female)
ATCAGGCGCAAGCACGCTGGCAATGAAGTGCGCGCCCACATGGACACATC
GGACGACCTGCCGCATGTCCACGTGTCCCTCTCGAGATCAGGCGCAAGCA
CGCTGGCAATGAAGTGCGCGCCCACATGGACACATCGGACGACCTGCCGC
ATGTCCACGTGTCCCTCTCGAGGAATGGAAACGCACAACGAGAGGAGAAG
GGCCGTGCGAGAAATGCAAACCAAATCATTTGGAACGGGTCAGAGAAGAA
GGCAACAGAATGGAAACGCACAACGAGAGGAGAAGGGCCGTGCGAGAAAT
GCAAACCAAATCATTTGGAACGGGTCAGAGAAGAAGGCAACA
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