mRNA_H-canaliculatus_F_contig14766.3622.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14766.3622.1
Unique NamemRNA_H-canaliculatus_F_contig14766.3622.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig14766.3622.1 vs. uniprot
Match: A0A6H5KCT0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCT0_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 1.930e-18
Identity = 66/127 (51.97%), Postives = 86/127 (67.72%), Query Frame = 1 
Query:    1 SVMNAAFLKGVLLKGHERPGTRG-----ETQGAEREKEEGAMLNRAETMLEQFCKQVRLSPEPRVQARISWLLDHGA-----HAAKRVSSSLSVSIAAAALLCPRASACLAADPDLLALAGAVLATY 351
            SVM+ AF +G+      R  T G       +  ++E +E A+L  AET+ ++FC+QVRL+PE R+QAR+SWLLD GA      +    S S+ VS AAAALLCP+ASACLAAD DLLA+AGAVLAT+
Sbjct: 1186 SVMDTAFSRGLSS----RAATGGTLSIDHAREPDQEAQERAILGTAETVFDRFCEQVRLTPEVRIQARLSWLLDSGAPGKAGSSVPASSCSVCVSTAAAALLCPKASACLAADSDLLAMAGAVLATH 1308
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14766.3622.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KCT0_9PHAE1.930e-1851.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14766contigH-canaliculatus_F_contig14766:63..2440 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size2018
Cds size1488
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14766.3622.1prot_H-canaliculatus_F_contig14766.3622.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14766 587..2434 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929220.7673237-UTR-H-canaliculatus_F_contig14766:62..5861622929220.7673237-UTR-H-canaliculatus_F_contig14766:62..586Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14766 63..586 -
1696845723.2147408-UTR-H-canaliculatus_F_contig14766:62..5861696845723.2147408-UTR-H-canaliculatus_F_contig14766:62..586Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14766 63..586 -
1622929220.8129587-UTR-H-canaliculatus_F_contig14766:2434..24401622929220.8129587-UTR-H-canaliculatus_F_contig14766:2434..2440Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14766 2435..2440 -
1696845723.248234-UTR-H-canaliculatus_F_contig14766:2434..24401696845723.248234-UTR-H-canaliculatus_F_contig14766:2434..2440Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14766 2435..2440 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929220.7784119-CDS-H-canaliculatus_F_contig14766:586..19271622929220.7784119-CDS-H-canaliculatus_F_contig14766:586..1927Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14766 587..1927 -
1696845723.224571-CDS-H-canaliculatus_F_contig14766:586..19271696845723.224571-CDS-H-canaliculatus_F_contig14766:586..1927Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14766 587..1927 -
1622929220.7930236-CDS-H-canaliculatus_F_contig14766:2287..24341622929220.7930236-CDS-H-canaliculatus_F_contig14766:2287..2434Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14766 2288..2434 -
1696845723.234828-CDS-H-canaliculatus_F_contig14766:2287..24341696845723.234828-CDS-H-canaliculatus_F_contig14766:2287..2434Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14766 2288..2434 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14766.3622.1

>prot_H-canaliculatus_F_contig14766.3622.1 ID=prot_H-canaliculatus_F_contig14766.3622.1|Name=mRNA_H-canaliculatus_F_contig14766.3622.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=496bp
MNAAFLKGVLLKGHERPGTRGETQGAEREKEEGAMLNRAETMLEQFCKQV
RLSPEPRVQARISWLLDHGAHAAKRVSSSLSVSIAAAALLCPRASACLAA
DPDLLALAGAVLATYRAGGGGGRDRGDGGSGTGRTARRTKVFLPLGEELL
RAAGGRARGRLLEAIDSGKKVPRGSPSLLTVGENGGGSSGGAEIDGVGGS
GSEQSRSGQVAVVEGQEQQQQRRLSPTVSTPLPAGDEHGRQARRRRGCTV
WETPRGMGLTPRTPGAQKQTPYTTGDGGDGTDSATRVGQPPRARGQTVWE
TPRGVGLTPKIPGAGWSGGYFSADGGDDGDSPGGGGGVRERRVEDDYGPG
SASRLFQPPRARGQTVWETPRGVGLTPRTPGAGSRERYFSANGGDKRDAT
GGGGVEERKGEGRHDPGSAATAHQRPRARGQTLWETPRGVGLTPKTQGGA
RATRTPPLFARDGPSSGTRSAASGSLASPMVDGQREMRSYAQGGL*
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mRNA from alignment at H-canaliculatus_F_contig14766:63..2440-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14766.3622.1 ID=mRNA_H-canaliculatus_F_contig14766.3622.1|Name=mRNA_H-canaliculatus_F_contig14766.3622.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2378bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14766:63..2440- (Hapterophycus canaliculatus Oshoro5f female)
AGCGTGATGAACGCCGCTTTCTTGAAAGGAGTATTGCTTAAGGGGCACGA
GCGCCCCGGTACGCGTGGCGAAACTCAAGGAGCCGAACGGGAAAAGGAAG
AAGGGGCAATGCTGAACCGCGCGGAAACTATGCTGGAGCAGTTCTGCAAA
CAGGTATGAAGGGGCCAGGGAACTGGCCGGTTGGGCTTTTCTTATCGTGT
CTGCTTTCGTGCCCCGCGCAGAGGCCCTGGGTTGGAACGGCTGGCTTGCA
GAGAGTCCCCACGCCCGGCTTGTGGTGCTCTCGACCGCGCAAGGGCCCTT
GCTCTGCTGCCCCGGCCCTCCTCTCCGGACACAAGGACTGCCCACCCATG
CGGAGGTTACCACCCCCCACCGCCCACTCCTCCGGCCGATCAAAGCTCGA
TAGCCGCTGTAGCCCGTCGCCCCCTAAGCAGGCTGCCACTCTCGTCCTGT
AGAGCGCGTGGAAGTTGACGGACCGTCGCCCCCCTGTCCCCGCTCCCTCG
CTGGACACGCCAGGTCCGCCTTTCCCCGGAGCCCCGCGTCCAGGCGCGCA
TCTCGTGGCTTCTCGACCACGGGGCCCACGCGGCCAAGCGCGTGTCGTCT
TCCTTGTCCGTGTCCATCGCGGCCGCCGCGCTGCTTTGCCCTCGAGCTTC
GGCGTGCCTGGCGGCCGACCCAGACCTGCTGGCGTTGGCCGGGGCGGTGC
TGGCAACGTACCGCGCTGGCGGAGGCGGCGGCCGCGACCGTGGTGATGGC
GGCAGCGGGACGGGCCGGACAGCGCGTCGGACAAAGGTGTTCCTCCCTCT
AGGGGAAGAGCTCCTGAGGGCCGCGGGGGGGCGGGCGAGGGGCCGGCTGC
TTGAGGCGATCGACAGCGGGAAGAAGGTGCCACGAGGGTCGCCATCCCTG
TTGACTGTTGGGGAAAACGGCGGCGGAAGCTCTGGGGGCGCTGAAATTGA
CGGTGTTGGCGGGAGCGGCAGCGAGCAATCGCGGAGTGGACAGGTGGCTG
TAGTTGAAGGGCAAGAGCAGCAGCAGCAGCGGCGGCTCTCCCCCACCGTG
TCGACGCCACTTCCGGCCGGAGACGAGCACGGCCGCCAGGCACGCCGACG
CAGAGGCTGCACGGTGTGGGAGACCCCGAGAGGCATGGGTCTGACACCCA
GGACACCGGGAGCCCAGAAACAGACTCCGTACACCACCGGCGATGGAGGA
GACGGCACCGACAGCGCCACCCGCGTGGGCCAGCCGCCTCGGGCGAGGGG
CCAGACGGTGTGGGAAACTCCCCGGGGGGTAGGTCTCACGCCGAAGATAC
CAGGCGCCGGTTGGAGCGGTGGTTACTTTTCCGCCGACGGCGGTGACGAT
GGCGACTCACCGGGCGGCGGCGGCGGCGTGAGAGAGCGGAGAGTTGAAGA
CGACTACGGCCCGGGAAGCGCGTCGAGGTTGTTTCAGCCGCCTCGGGCGA
GGGGTCAGACGGTGTGGGAAACTCCCCGCGGGGTGGGCCTGACCCCGAGA
ACGCCCGGCGCAGGCTCGAGGGAGCGTTATTTCTCCGCAAACGGCGGTGA
CAAACGCGACGCTACGGGAGGCGGCGGCGTGGAAGAGCGGAAAGGTGAAG
GCCGCCACGATCCGGGCAGCGCAGCCACCGCGCATCAGCGGCCTCGAGCG
AGGGGGCAGACGTTGTGGGAAACTCCCCGGGGGGTGGGCCTAACTCCGAA
AACACAGGGCGGGGCTCGGGCAACGAGGACGCCTCCGCTCTTCGCGCGCG
ACGGTCCTTCGTCCGGCACGCGGTCGGCGGCGTCCGGCTCGCTCGCTTCT
CCGATGGTCGACGGCCAACGCGAGATGCGGTCGTATGCGCAGGGCGGCCT
TTGACCGGTTGTGTGGTTGTTGCGTGGCCAGACACGGTCCACCTATGGAG
GTAAATTAACGGATGTATGTACCCGTATTGTGGACTGATACCAGGTATGT
GCGTATCCCACCCCTGCACCGTTCCCGCCCGCTACCAGGGCGGGGCAGGT
GGGAACCAGGGGAATGCTGCGGGAGTCGAGCGCGCCCGCGCGGCCGTGGG
TATGACGAACTTCTGGGTAGCCTGCGAAGAGTTTGGGCGGGTCGACCCGT
TTTCCAGGGCTTGTCGAGCAGTTTGATAGGTTGCCCCTGATTTCAACCGA
CGCGACTCCAAGGTGGGGCGCCGAGCGCTTGACTCCATCGTAGGATCAAT
TTCATCCCACCTGGATGTAGAGGTAAGTAGACACCAGAAACGAAGCAAGA
TTATTTTCTTCCAGCGGCCGTCAACAGCTCATCGTGAAACTCAGCGAAGC
GCGGTGTGTCATGCGTCACTTCGCCACCAAGCTCGGCGTTTATCGTGGCG
AAATCAAGGGTTCAGCCCCCCCCCCCCC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14766:63..2440-

>mRNA_H-canaliculatus_F_contig14766.3622.1 ID=mRNA_H-canaliculatus_F_contig14766.3622.1|Name=mRNA_H-canaliculatus_F_contig14766.3622.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2976bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14766:63..2440- (Hapterophycus canaliculatus Oshoro5f female)
ATGAACGCCGCTTTCTTGAAAGGAGTATTGCTTAAGGGGCACGAGCGCCC
CGGTACGCGTGGCGAAACTCAAGGAGCCGAACGGGAAAAGGAAGAAGGGG
CAATGCTGAACCGCGCGGAAACTATGCTGGAGCAGTTCTGCAAACAGATG
AACGCCGCTTTCTTGAAAGGAGTATTGCTTAAGGGGCACGAGCGCCCCGG
TACGCGTGGCGAAACTCAAGGAGCCGAACGGGAAAAGGAAGAAGGGGCAA
TGCTGAACCGCGCGGAAACTATGCTGGAGCAGTTCTGCAAACAGGTCCGC
CTTTCCCCGGAGCCCCGCGTCCAGGCGCGCATCTCGTGGCTTCTCGACCA
CGGGGCCCACGCGGCCAAGCGCGTGTCGTCTTCCTTGTCCGTGTCCATCG
CGGCCGCCGCGCTGCTTTGCCCTCGAGCTTCGGCGTGCCTGGCGGCCGAC
CCAGACCTGCTGGCGTTGGCCGGGGCGGTGCTGGCAACGTACCGCGCTGG
CGGAGGCGGCGGCCGCGACCGTGGTGATGGCGGCAGCGGGACGGGCCGGA
CAGCGCGTCGGACAAAGGTGTTCCTCCCTCTAGGGGAAGAGCTCCTGAGG
GCCGCGGGGGGGCGGGCGAGGGGCCGGCTGCTTGAGGCGATCGACAGCGG
GAAGAAGGTGCCACGAGGGTCGCCATCCCTGTTGACTGTTGGGGAAAACG
GCGGCGGAAGCTCTGGGGGCGCTGAAATTGACGGTGTTGGCGGGAGCGGC
AGCGAGCAATCGCGGAGTGGACAGGTGGCTGTAGTTGAAGGGCAAGAGCA
GCAGCAGCAGCGGCGGCTCTCCCCCACCGTGTCGACGCCACTTCCGGCCG
GAGACGAGCACGGCCGCCAGGCACGCCGACGCAGAGGCTGCACGGTGTGG
GAGACCCCGAGAGGCATGGGTCTGACACCCAGGACACCGGGAGCCCAGAA
ACAGACTCCGTACACCACCGGCGATGGAGGAGACGGCACCGACAGCGCCA
CCCGCGTGGGCCAGCCGCCTCGGGCGAGGGGCCAGACGGTGTGGGAAACT
CCCCGGGGGGTAGGTCTCACGCCGAAGATACCAGGCGCCGGTTGGAGCGG
TGGTTACTTTTCCGCCGACGGCGGTGACGATGGCGACTCACCGGGCGGCG
GCGGCGGCGTGAGAGAGCGGAGAGTTGAAGACGACTACGGCCCGGGAAGC
GCGTCGAGGTTGTTTCAGCCGCCTCGGGCGAGGGGTCAGACGGTGTGGGA
AACTCCCCGCGGGGTGGGCCTGACCCCGAGAACGCCCGGCGCAGGCTCGA
GGGAGCGTTATTTCTCCGCAAACGGCGGTGACAAACGCGACGCTACGGGA
GGCGGCGGCGTGGAAGAGCGGAAAGGTGAAGGCCGCCACGATCCGGGCAG
CGCAGCCACCGCGCATCAGCGGCCTCGAGCGAGGGGGCAGACGTTGTGGG
AAACTCCCCGGGGGGTGGGCCTAACTCCGAAAACACAGGGCGGGGCTCGG
GCAACGAGGACGCCTCCGCTCTTCGCGCGCGACGGTCCTTCGTCCGGCAC
GCGGTCGGCGGCGTCCGGCTCGCTCGCTTCTCCGATGGTCGACGGCCAAC
GCGAGATGCGGTCGTATGCGCAGGGCGGCCTTTGAGTCCGCCTTTCCCCG
GAGCCCCGCGTCCAGGCGCGCATCTCGTGGCTTCTCGACCACGGGGCCCA
CGCGGCCAAGCGCGTGTCGTCTTCCTTGTCCGTGTCCATCGCGGCCGCCG
CGCTGCTTTGCCCTCGAGCTTCGGCGTGCCTGGCGGCCGACCCAGACCTG
CTGGCGTTGGCCGGGGCGGTGCTGGCAACGTACCGCGCTGGCGGAGGCGG
CGGCCGCGACCGTGGTGATGGCGGCAGCGGGACGGGCCGGACAGCGCGTC
GGACAAAGGTGTTCCTCCCTCTAGGGGAAGAGCTCCTGAGGGCCGCGGGG
GGGCGGGCGAGGGGCCGGCTGCTTGAGGCGATCGACAGCGGGAAGAAGGT
GCCACGAGGGTCGCCATCCCTGTTGACTGTTGGGGAAAACGGCGGCGGAA
GCTCTGGGGGCGCTGAAATTGACGGTGTTGGCGGGAGCGGCAGCGAGCAA
TCGCGGAGTGGACAGGTGGCTGTAGTTGAAGGGCAAGAGCAGCAGCAGCA
GCGGCGGCTCTCCCCCACCGTGTCGACGCCACTTCCGGCCGGAGACGAGC
ACGGCCGCCAGGCACGCCGACGCAGAGGCTGCACGGTGTGGGAGACCCCG
AGAGGCATGGGTCTGACACCCAGGACACCGGGAGCCCAGAAACAGACTCC
GTACACCACCGGCGATGGAGGAGACGGCACCGACAGCGCCACCCGCGTGG
GCCAGCCGCCTCGGGCGAGGGGCCAGACGGTGTGGGAAACTCCCCGGGGG
GTAGGTCTCACGCCGAAGATACCAGGCGCCGGTTGGAGCGGTGGTTACTT
TTCCGCCGACGGCGGTGACGATGGCGACTCACCGGGCGGCGGCGGCGGCG
TGAGAGAGCGGAGAGTTGAAGACGACTACGGCCCGGGAAGCGCGTCGAGG
TTGTTTCAGCCGCCTCGGGCGAGGGGTCAGACGGTGTGGGAAACTCCCCG
CGGGGTGGGCCTGACCCCGAGAACGCCCGGCGCAGGCTCGAGGGAGCGTT
ATTTCTCCGCAAACGGCGGTGACAAACGCGACGCTACGGGAGGCGGCGGC
GTGGAAGAGCGGAAAGGTGAAGGCCGCCACGATCCGGGCAGCGCAGCCAC
CGCGCATCAGCGGCCTCGAGCGAGGGGGCAGACGTTGTGGGAAACTCCCC
GGGGGGTGGGCCTAACTCCGAAAACACAGGGCGGGGCTCGGGCAACGAGG
ACGCCTCCGCTCTTCGCGCGCGACGGTCCTTCGTCCGGCACGCGGTCGGC
GGCGTCCGGCTCGCTCGCTTCTCCGATGGTCGACGGCCAACGCGAGATGC
GGTCGTATGCGCAGGGCGGCCTTTGA
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