mRNA_H-canaliculatus_F_contig1476.3618.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig1476.3618.1 vs. uniprot
Match: D8LEE2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEE2_ECTSI) HSP 1 Score: 1519 bits (3933), Expect = 0.000e+0 Identity = 1128/2029 (55.59%), Postives = 1256/2029 (61.90%), Query Frame = 1
Query: 130 TLLILRPVQYTTAFRPHARPGNPPTATYRSFSSGGGSQHCSSGRSCGGVALASSDPNTEIAASEA--TTQHAAPVATHASARRGRGWSGSPTSAMATFASRGRRPAKARALQEHAWRTAGRREVS-LCMSQTSPPVFQPQQAGDRRDGSPATGGPVVGEEGERSGGI--GGEGAVDLQHQPASLN-HXXXXXXXXXXXXPVPIDLSGGPSAINGRPPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPARLADDVAEMKALGKEGKWRGAVAVLTRLKEDAVEAAHGGDGDPDLVPNLAVYNAAISAVSRSAQWDEALGLLEEMRSAGVQPDVMSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMGCSSSPPGRG------GGWQRAVALLKRMSVDPRPEAQPQALSYTLVLKACGREGRWEAALRLVAEMQAKGLEPTVFTFRHALAACSGSGSPQD---GEVEEDGFAAAAWERCRSLMDAMGRAGLQPDRLCYKYAVDAAAKADDVDAALELMDGMEACEDFRGAVEYNEIIVACGRRGDWQRAVSTLGRIRRKGSAPDAYSFAMAMTXXXXXXXXXXXXXXXXXXXXXGGGVRPNTVVYNTLLGLCRGRPLRGXXXXXXXXXXXXXXXXXXXAVEGAGANLNGYSGGRGIVGVNGGGSVAVDSSSSSISDGNVAGGLPDGRPVREGRSSGVAGEGFGRPKGPRLSGSGRWG--EQPEELVETAVSLLHEMTVGGGECAPDKISFELVMQACVNAGRPESALKVFRAMTRWASGGSPVAPRGE---------GRGRGGRRRVAGGVRPDRATYRLGLTAAAEAGDGAAAAVLLEEMRDAGVSMDESAFHLAATAFGRAGLWQQGVRLAAMATERGVALFPSTLTSILGACAKGARWREALDVLGRHRPVLRASSSSSPTAESERRTESVAGGFAGKGGAPRTGRGEQNVVCAYTLAMVACRAADRHSEGLQVLAMLEEDGVVGDEAFFRAALKCCARAGAPTRAGARTRERGGLGGEGSGSGAAVADRVLEGMAAQGFRCGVEGFTDVAQAYGLAGRWEDALALLPRAAEAXXXXXXXXXXXXXXXIVAGPDEPMYCSVINAMGESGEWRAAVELLQSMRRR-PSASPSMXXXXXXXXXXXXASTVTTER---TLEPPLPGRPSYGCACRACARQGQWGVVSELLENMREDGVARDASIYASAMRAFVEAGEWERAVEIVTVEMERDGVVPDAISYNQALRACRVGADGAGRAADLALALVGEVTSRGLGPDVLSLEAAARVCLADDRPELGLDMVSEALESWRRGSLGGARGAGEGRGTWTREEVQRLETMRIVLLGRLGRWEESLAALDVMRTRFGEEELDERAFVAAAHACAAAGEWSLIQVLQSEAHGSAGGGAGVSPGSLWEMRRALLSGLSKAGVWKRAMGVLRDTHGGRGGS----AAGGIEEERVGGSRTLSDPSPNWERRMLKDYRTVMHACLRAGAWEEALSVWSHLRSHPSAPSPCARTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------VSAAVVADD-RAFDEEVASGRRGWG----DGLVDADGGVADENGXXXXXXXXXXXXXXXXXXXXGRDTALRSVLSEMAADG---VEPGWEIYAAVCWARSQRKQWHGASVGVLKLIGESDLADGTAAAGAAXXXXXXXXXXXXQRFHEGMRSLYRRLLAAASKIPSFQTAGGTGSGPAGHAVREVLADAEDRLVSLPGGPGPR--VLAAAATAFARAGDWEGARDTALRFDPRVGGGSSGAASXXXXXXXXXXXXXXXXX------IGACARAGELVEAEALAEVAAELASAA---ADSIARFVDEEEGGIPPSDGXXXXXXXXXXXXXXLLGFNEKAGLALAAAYERAGRFSDAEALRMRLQGRLASRLGLEEAAGVEEGGAAG-------LLPSVAGRSNXXXXXXXXXXXXXXRPLRGTDEGLGTWDADGEVGVDDGADDQYDLFLRWMATG 6015
TLLILRP+++T A RP ARP NPP +RS Q+C+SGR GGVALASS + A+ T H + AS RRG G + TSA AT ASR + LQ+ AWR AGRR V+ LCMSQTSPPVFQPQQAGDR+D G+GA D++ QPA ++ H XXXXXXXXXXX P R+ADD+A MKALGKEGKWR AVAVL++LKEDA AA GDG DL PNLAVYN EEMRSAGVQPDV XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GCS P G +RA+ LL+ M+ DPRPEAQP+ALSYTLVLKACGREGRWE AL+L+ EMQAKGLEPTV +FR+AL AC+ S S + G EED A WERCRSLMDAMGR GL+PDRLCYK AVDAAAKA DV AAL+LMDGME CE FRGAVE XXXXXXXXXXXXXXXXXXXXX GVRPNTVVYNTLL LCRG+PLRG XXXXXXXXXXXXXXX +G G NLNGY G G+ VNG G VA G+PDGR +R G S + G G G E+P+ELV TAV+LLHEMTVGG ECAPDK+SFELVMQACVNAGRPESALKVFRAM R A+G GRGR A VRPDRAT+RLGLTAAAEAGDG AAAVLLEEMRDAG++MDESAFHLAATAFGRAGLW+QGVR+A +A E+G+AL P+TLTSILGACAK ARWREAL +L RPVL+ SS P + AG AG RGE NVV AYTLAMVACR + RHSEGL+VL MLEEDG VGDEAFFR ALKCCA+AG G+G G SGAAVADRVLEGM+AQG RCGVEGFTD+AQAYGLAGRWEDALALLPRAA + A PDE MYCSVINAMGESG W AAVEL+QSMRRR PS XXXXXXXXXXXX +LEPP PGR +YGCACRACAR+G+WG V L+E+MREDG+ RD+S+YASAMRAFVEAG+WERAVEIVTVEMERDGV PDA+S+ QALRACR GADG+GRAA LALALVGEV SRGL P V+ LE+AAR CLADDRPEL LD+VSE L+SWRRGSLGG G GR W +EVQRLETMRI +LGRLGRWE+SL ALD MR +FG+++LDERAFV+AA ACAAAGEWSLIQVLQSEA + G G GVSPGS W+M+RALLSGL+ AG+W+RAMG+LR+ H G GG AAG EER G + DPSP+W+RRM KD+R+VMHACLRAGAW++ALSVWS LRS P PC RT VSAA VADD +++E SGR GWG D +VD DGG + ALRSVLS+MAA G VE GWE YAAVCWARSQRKQWH AS+GVL+L+GE DG A EGMRSLYRRLLAAASKIP F T VLAAAATAFARAGDWEGARD A+RFDPRVGG ++G AS + A ARAGELVEAEALAE+A +A+ A A S SDG LGF+ +AG+ALA AYERAGR SDAE LR RLQGR+AS LGLEEAAGVE G AA LPSV G S RPL DE TW YDLFL+WMATG
Sbjct: 8 TLLILRPIKHTAALRPDARPANPPADPFRS-------QYCNSGRRRGGVALASSPATVRMTATAGGGATTHIGSIKDCASGRRGAGLT---TSATATLASRVSLGMQGGGLQKRAWRAAGRRPVAPLCMSQTSPPVFQPQQAGDRKDSXXXXXXXXXXXXXXXXXXXXSNGQGAADVRQQPAVVSLHQXXXXXXXXXXXXXP------------------------------------------------RVADDIAAMKALGKEGKWREAVAVLSQLKEDA-SAASNGDGS-DLAPNLAVYNXXXXXXXXXXXXXXXXXXXEEMRSAGVQPDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXITGCSCGPXXXXXXXXXXGEVERALRLLEEMAADPRPEAQPEALSYTLVLKACGREGRWETALQLLTEMQAKGLEPTVLSFRYALTACASSSSSRGVSGGSGEED--FAGVWERCRSLMDAMGRLGLEPDRLCYKQAVDAAAKAGDVGAALDLMDGMENCEGFRGAVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVRPNTVVYNTLLALCRGKPLRGVRGGXXXXXXXXXXXXXXXXXDGTGPNLNGYGGXGGLEEVNGHG---------------VAVGMPDGRAIRNGVS---------------VPGGGTVGSRERPDELVGTAVALLHEMTVGGSECAPDKMSFELVMQACVNAGRPESALKVFRAMARVAAGXXXXXXXXXXXXXXXXXXGRGR------AVEVRPDRATFRLGLTAAAEAGDGPAAAVLLEEMRDAGIAMDESAFHLAATAFGRAGLWRQGVRVAVVAAEQGIALAPTTLTSILGACAKQARWREALGLLQGTRPVLQQGLSSLPLSTG-------AGVVAGN-----ERRGEGNVVAAYTLAMVACRRSGRHSEGLRVLEMLEEDGGVGDEAFFRVALKCCAKAG-------------GVGERGDCSGAAVADRVLEGMSAQGIRCGVEGFTDIAQAYGLAGRWEDALALLPRAAA----------------LAAVPDERMYCSVINAMGESGAWEAAVELIQSMRRRRPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLEPPPPGRAAYGCACRACARKGEWGAVLGLIEDMREDGLERDSSVYASAMRAFVEAGDWERAVEIVTVEMERDGVSPDALSFGQALRACRAGADGSGRAAQLALALVGEVRSRGLEPGVVILESAARACLADDRPELALDIVSETLDSWRRGSLGGDGDGGGGR-RWGIDEVQRLETMRITVLGRLGRWEDSLEALDAMRAKFGDDDLDERAFVSAARACAAAGEWSLIQVLQSEAS-AVGDGDGVSPGSAWDMQRALLSGLTTAGMWRRAMGMLREMHHGGGGDTVMPAAG---EERGQG---MPDPSPHWQRRMFKDHRSVMHACLRAGAWDKALSVWSDLRSIVEGPIPCGRTYTAALRACGPLGLWATARDLLSEMRDGAEGAEGDGLLLLPEARHYAFAVSAATVADDISSYEEATLSGRGGWGAGGSDAVVDGDGGSG--------------------------NAALRSVLSDMAAGGGGGVEIGWETYAAVCWARSQRKQWHRASLGVLELMGEHGFGDGALGTEEAA---------------EGMRSLYRRLLAAASKIPRFATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLAAAATAFARAGDWEGARDIAVRFDPRVGGPTAGGASSGTGEPSAVRRRTADAAAVVSVAVAATARAGELVEAEALAELARVIATTAEVSASSSGXXXXXXXSRSRGSDGEEARVSRGTERSNNPLGFDHRAGVALADAYERAGRLSDAEGLRSRLQGRMASSLGLEEAAGVEGGVAAAPAASAVPRLPSVGGHSRRR------------RPLAEGDES--TWPXXXXXXXXXXX---YDLFLQWMATG 1831
BLAST of mRNA_H-canaliculatus_F_contig1476.3618.1 vs. uniprot
Match: D8LMP8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMP8_ECTSI) HSP 1 Score: 77.4 bits (189), Expect = 2.880e-10 Identity = 90/343 (26.24%), Postives = 128/343 (37.32%), Query Frame = 1
Query: 955 AVEAAHGG---DGDPDLVPNLAVYNAAISAVSRSAQWDEALGLLEEMRSAGVQPDVMSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMGCSSSPPGRGGGWQRAVALLKRMSVDPRPEAQPQALSYTLVLKACGREGRWEAALRLVAEMQAKGLEPTVFTFRHALAACS-GSGSP---------------QDGEVEEDGFAAA------------AWERCRSLMDAMGRAGLQPDRLCYKYAVDAAAKADDVDAALELMDGMEACEDFRGA-----------------------------VEYNEIIVACGRRGDWQRAVSTLGRIRRKGSA 1803
A EA GG P PNL YNAA++A +R+ + AL LLEEM GV D S G ++ GGW + R +V PRP+A S+ + ACG GR + AL L+ +M++ G EP V F + A S G P ++G DG+AAA +W R L+ M AGL P+ Y + +A+ + ALE++ M++ R A V +N + ACG+ G W++A+S L I G A
Sbjct: 493 AAEARGGGAAISSSPAAGPNLVCYNAALTACARAKEGSTALDLLEEMEGRGVF-DTESFNCAMLACRGKGQWHKATAILNRMVSGDAVRLGEGSGGTAGGAAAGE----GGWGARL----RTTV-PRPDAY----SFASAITACGDVGRADVALELLRKMKSAGAEPNVVVFNAVIRAVSRGITGPAFGATPERAGVTAAWEEGSAAGDGYAAAGRGEGGEKAGRDSWRRAYFLLVEMREAGLTPEVKTYNTVLAVCQRAEAWEGALEVLAEMKSGTAKRPARSGPRDRDASAHGAAVSTWIEEPAPPPDLVSFNTAMGACGKAGQWEKALSLLEEIADSGFA 821
BLAST of mRNA_H-canaliculatus_F_contig1476.3618.1 vs. uniprot
Match: A0A6H5KUL4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUL4_9PHAE) HSP 1 Score: 73.6 bits (179), Expect = 4.780e-9 Identity = 86/343 (25.07%), Postives = 127/343 (37.03%), Query Frame = 1
Query: 955 AVEAAHGG---DGDPDLVPNLAVYNAAISAVSRSAQWDEALGLLEEMRSAGVQPDVMSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMGCSSSPPGRGGGWQRAVALLKRMSVDPRPEAQPQALSYTLVLKACGREGRWEAALRLVAEMQAKGLEPTVFTFRHALAACSG----------------SGSPQDGEVEEDGFAAA------------AWERCRSLMDAMGRAGLQPDRLCYKYAVDAAAKADDVDAALELMDGMEACEDFRGA-----------------------------VEYNEIIVACGRRGDWQRAVSTLGRIRRKGSA 1803
A EA GG P PNL YNAA++A +R+ + AL LL+EM GV D S G + S GGW + R +V PRP+A S+ + ACG GR + AL L+ +M++ G EP V F + A S + + ++G G+ AA +W R L+ M AGL P+ Y + +A+ + ALE+++ M++ R A V +N + ACG+ G W++A+S L I G A
Sbjct: 743 AAEARGGGAAISSSPAAGPNLVCYNAALTACARAREGSTALELLQEMEGRGVF-DTESFNCAMLACRGNGQWHKATAILDRMVSGDAVRLGEGSG----GTAGSAAAGKGGWGARL----RTTV-PRPDAY----SFASAITACGDVGRADVALELLRKMKSAGAEPNVVVFNAVIRAVSRGIKGLAFGATPERAGVTAAGEEGSAAGGGYVAAGRGEGGEDGGHDSWRRAYFLLVEMREAGLTPEVKSYNTVLAVCQRAEAWEGALEVLEEMKSGTAKRPARSGPRDRDAAAHGAAVSSWIEEPAPPPNLVSFNTAMGACGKAGQWEKALSLLEEIADSGFA 1071
BLAST of mRNA_H-canaliculatus_F_contig1476.3618.1 vs. uniprot
Match: A0A835YLF2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLF2_9STRA) HSP 1 Score: 63.9 bits (154), Expect = 3.760e-6 Identity = 35/79 (44.30%), Postives = 52/79 (65.82%), Query Frame = 1
Query: 883 EMKALGKEGKWRGAVAVLTRLKEDAVEAAHGGDGDPDLVP-NLAVYNAAISAVSRSAQWDEALGLLEEMRSAGVQPDVM 1116
E+ ALG++G+W A+A L +AA G + D +P N ++ AAISA++RS +W +ALG+LE MR AGV+PD +
Sbjct: 169 ELNALGRQGRWSEALARL--------DAARGAE---DPIPMNAYIFGAAISALARSRKWQQALGVLETMREAGVRPDTV 236 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1476.3618.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1476.3618.1 >prot_H-canaliculatus_F_contig1476.3618.1 ID=prot_H-canaliculatus_F_contig1476.3618.1|Name=mRNA_H-canaliculatus_F_contig1476.3618.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=2065bp MPPCHKTRRDRVGARSLLEHEAPMTRGRPRSRGVASAGRTSLATLLILRPback to top mRNA from alignment at H-canaliculatus_F_contig1476:2779..15508- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig1476.3618.1 ID=mRNA_H-canaliculatus_F_contig1476.3618.1|Name=mRNA_H-canaliculatus_F_contig1476.3618.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=12730bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1476:2779..15508- (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1476:2779..15508- >mRNA_H-canaliculatus_F_contig1476.3618.1 ID=mRNA_H-canaliculatus_F_contig1476.3618.1|Name=mRNA_H-canaliculatus_F_contig1476.3618.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=12390bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1476:2779..15508- (Hapterophycus canaliculatus Oshoro5f female)back to top |