mRNA_H-canaliculatus_F_contig1476.3617.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1476.3617.1
Unique NamemRNA_H-canaliculatus_F_contig1476.3617.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1476.3617.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1476contigH-canaliculatus_F_contig1476:1629..2730 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1102
Cds size567
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1476.3617.1prot_H-canaliculatus_F_contig1476.3617.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1476 1740..2306 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929220.2121673-UTR-H-canaliculatus_F_contig1476:1628..17391622929220.2121673-UTR-H-canaliculatus_F_contig1476:1628..1739Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1476 1629..1739 +
1696845722.8972852-UTR-H-canaliculatus_F_contig1476:1628..17391696845722.8972852-UTR-H-canaliculatus_F_contig1476:1628..1739Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1476 1629..1739 +
1622929220.2384357-UTR-H-canaliculatus_F_contig1476:2306..27301622929220.2384357-UTR-H-canaliculatus_F_contig1476:2306..2730Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1476 2307..2730 +
1696845722.9196284-UTR-H-canaliculatus_F_contig1476:2306..27301696845722.9196284-UTR-H-canaliculatus_F_contig1476:2306..2730Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1476 2307..2730 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929220.2269917-CDS-H-canaliculatus_F_contig1476:1739..23061622929220.2269917-CDS-H-canaliculatus_F_contig1476:1739..2306Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1476 1740..2306 +
1696845722.906852-CDS-H-canaliculatus_F_contig1476:1739..23061696845722.906852-CDS-H-canaliculatus_F_contig1476:1739..2306Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1476 1740..2306 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1476.3617.1

>prot_H-canaliculatus_F_contig1476.3617.1 ID=prot_H-canaliculatus_F_contig1476.3617.1|Name=mRNA_H-canaliculatus_F_contig1476.3617.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=189bp
MPVSREYIGPAIFHFSTLKLWTASTAQPESDRAAFFRPNFSQAGDTGRPT
QDAFFLSPDEHVRSRPSTPPESVVRGKSKESGSHETLSSNGACDFYRQRR
SVGWANQASSREKTRTCSAHAATRTRCTHNRHGVSEAHPNNKRTHHKSGA
QNMGRDHLPNTKHGACSLACLAHGRRRKKQPGRPSPQK*
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mRNA from alignment at H-canaliculatus_F_contig1476:1629..2730+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1476.3617.1 ID=mRNA_H-canaliculatus_F_contig1476.3617.1|Name=mRNA_H-canaliculatus_F_contig1476.3617.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1102bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1476:1629..2730+ (Hapterophycus canaliculatus Oshoro5f female)
CTGGAGTGGAATAACCTTGTCTGCATAAACTGCTTCTCCCAAGAGCCAGA
CACAAGAAAACACGGTCGAGTATTGACACCATCGTCGGGAATTCCTGTTC
GCGATCGAAAGATGCCCGTCTCCCGCGAATATATCGGTCCAGCAATTTTT
CATTTTTCCACCCTCAAGCTCTGGACGGCATCGACAGCACAACCGGAAAG
CGACCGGGCCGCGTTTTTTCGTCCGAATTTTTCTCAAGCTGGCGACACAG
GCCGACCGACACAGGACGCTTTTTTCTTGTCTCCCGATGAGCATGTGCGC
TCACGGCCGTCAACGCCACCCGAGTCAGTCGTTCGCGGCAAAAGCAAAGA
AAGCGGGTCACACGAAACGCTCTCTTCGAATGGCGCTTGCGACTTTTATC
GTCAACGCCGTTCGGTTGGTTGGGCCAATCAAGCCTCGAGTCGTGAGAAA
ACGCGTACTTGCAGTGCACACGCTGCCACACGTACTCGATGCACCCACAA
CCGTCACGGCGTCTCAGAGGCGCATCCAAACAACAAACGAACTCACCACA
AATCCGGTGCGCAAAACATGGGACGAGACCACTTGCCGAACACAAAACAC
GGGGCCTGCTCGCTCGCTTGCTTGGCGCATGGCCGGCGGCGGAAGAAGCA
ACCGGGACGGCCGTCACCCCAAAAATGACTTCGGCTTCGGAAGAGGGAAA
ATTGAAAAACGCCAAATCAGCGAACCGCAGCGACGAAAGACTTGGATAAA
AAACAATCGTTTCTCCTGGTATGGTAGGAGTGTATGAACCCTTTTGGCAC
CCTTCTTGAAAACTGAACCCGTTTTTATCGCGAAACAAGAACGAACTCGT
AGTTTTCTTCTGTGTATTTTCAGAAGGAGCAAATTTCCTCGCAAAGATTG
ACCAGTCAGAAAACCGCGGGCACCTGTTCTCTTTCTCTCTTTACTACCCA
ACGAACCATCCCAAAACCCACCCTCCCCGCCTCCACCAAAGCTCCGCGAA
AAACGAACCTACAAAACACAAAGACCCAGCCCTTCCACCCCCCCAAACCC
CCGCTGTACAATGCCGCCTCCCTCCCGCCACCCCGCCCTGCCTCTTCAAA
AC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1476:1629..2730+

>mRNA_H-canaliculatus_F_contig1476.3617.1 ID=mRNA_H-canaliculatus_F_contig1476.3617.1|Name=mRNA_H-canaliculatus_F_contig1476.3617.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1134bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1476:1629..2730+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCCCGTCTCCCGCGAATATATCGGTCCAGCAATTTTTCATTTTTCCAC
CCTCAAGCTCTGGACGGCATCGACAGCACAACCGGAAAGCGACCGGGCCG
CGTTTTTTCGTCCGAATTTTTCTCAAGCTGGCGACACAGGCCGACCGACA
CAGGACGCTTTTTTCTTGTCTCCCGATGAGCATGTGCGCTCACGGCCGTC
AACGCCACCCGAGTCAGTCGTTCGCGGCAAAAGCAAAGAAAGCGGGTCAC
ACGAAACGCTCTCTTCGAATGGCGCTTGCGACTTTTATCGTCAACGCCGT
TCGGTTGGTTGGGCCAATCAAGCCTCGAGTCGTGAGAAAACGCGTACTTG
CAGTGCACACGCTGCCACACGTACTCGATGCACCCACAACCGTCACGGCG
TCTCAGAGGCGCATCCAAACAACAAACGAACTCACCACAAATCCGGTGCG
CAAAACATGGGACGAGACCACTTGCCGAACACAAAACACGGGGCCTGCTC
GCTCGCTTGCTTGGCGCATGGCCGGCGGCGGAAGAAGCAACCGGGACGGC
CGTCACCCCAAAAATGAATGCCCGTCTCCCGCGAATATATCGGTCCAGCA
ATTTTTCATTTTTCCACCCTCAAGCTCTGGACGGCATCGACAGCACAACC
GGAAAGCGACCGGGCCGCGTTTTTTCGTCCGAATTTTTCTCAAGCTGGCG
ACACAGGCCGACCGACACAGGACGCTTTTTTCTTGTCTCCCGATGAGCAT
GTGCGCTCACGGCCGTCAACGCCACCCGAGTCAGTCGTTCGCGGCAAAAG
CAAAGAAAGCGGGTCACACGAAACGCTCTCTTCGAATGGCGCTTGCGACT
TTTATCGTCAACGCCGTTCGGTTGGTTGGGCCAATCAAGCCTCGAGTCGT
GAGAAAACGCGTACTTGCAGTGCACACGCTGCCACACGTACTCGATGCAC
CCACAACCGTCACGGCGTCTCAGAGGCGCATCCAAACAACAAACGAACTC
ACCACAAATCCGGTGCGCAAAACATGGGACGAGACCACTTGCCGAACACA
AAACACGGGGCCTGCTCGCTCGCTTGCTTGGCGCATGGCCGGCGGCGGAA
GAAGCAACCGGGACGGCCGTCACCCCAAAAATGA
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