mRNA_H-canaliculatus_F_contig1475.3613.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1475.3613.1
Unique NamemRNA_H-canaliculatus_F_contig1475.3613.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1475.3613.1 vs. uniprot
Match: D8LS28_ECTSI (PX domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LS28_ECTSI)

HSP 1 Score: 265 bits (676), Expect = 3.240e-78
Identity = 152/231 (65.80%), Postives = 171/231 (74.03%), Query Frame = 3 
Query:   39 MAGFVRGTLHWLCDIMVLLLVGAFLAETSPSSPPGEATRAVACHSP----GARAVELLLAAFERLGVPVEWLREILMNEGGIAKGNTRVGGVLKRFRRRKRGVLASKQQQGQRRGRVCLEGATVSMSDFRVVDSKFASYKITV---TPGAGVGARWEVWRRMADMIKLKAALSKVSAPGVDLPPLPHSYRRSFDASRLTRRRRSIQHFLQVALEHSVLRSSDALIDFLSPE 710
            M   +   L WLC ++VL+LV A LAETSP+ P G A  A     P    G RA ELLLAA ERLG+PVEW R ++ + GG A  N   GGVL+RFR RKR  L SKQQ GQ R RV LEGA++S++D RVVDSKFA YKITV   T GA  GARWEVWRRMAD+IKLKAALSKVSA  V+LPPLPHSYRRSFDASRL RRRRSIQHFLQVA++   LR SDAL+DFLSPE
Sbjct:    1 MTAIIWVALQWLCSVLVLVLVSAVLAETSPAGP-GTAAAAGGGTPPRFSAGKRAFELLLAALERLGIPVEWTRGVV-DGGGTAGENRGRGGVLRRFRSRKRCALPSKQQPGQERVRVSLEGASLSLNDVRVVDSKFACYKITVATSTTGASAGARWEVWRRMADLIKLKAALSKVSAADVELPPLPHSYRRSFDASRLARRRRSIQHFLQVAVKQPALRDSDALLDFLSPE 229
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1475.3613.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LS28_ECTSI3.240e-7865.80PX domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1475contigH-canaliculatus_F_contig1475:4..4362 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons6
Model size928
Cds size906
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929219.172326-CDS-H-canaliculatus_F_contig1475:3..2181622929219.172326-CDS-H-canaliculatus_F_contig1475:3..218Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1475 4..218 -
1696845722.5552437-CDS-H-canaliculatus_F_contig1475:3..2181696845722.5552437-CDS-H-canaliculatus_F_contig1475:3..218Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1475 4..218 -
1622929219.1923506-CDS-H-canaliculatus_F_contig1475:809..9651622929219.1923506-CDS-H-canaliculatus_F_contig1475:809..965Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1475 810..965 -
1696845722.5679932-CDS-H-canaliculatus_F_contig1475:809..9651696845722.5679932-CDS-H-canaliculatus_F_contig1475:809..965Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1475 810..965 -
1622929219.2032273-CDS-H-canaliculatus_F_contig1475:1394..14611622929219.2032273-CDS-H-canaliculatus_F_contig1475:1394..1461Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1475 1395..1461 -
1696845722.5811214-CDS-H-canaliculatus_F_contig1475:1394..14611696845722.5811214-CDS-H-canaliculatus_F_contig1475:1394..1461Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1475 1395..1461 -
1622929219.2182066-CDS-H-canaliculatus_F_contig1475:1928..20481622929219.2182066-CDS-H-canaliculatus_F_contig1475:1928..2048Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1475 1929..2048 -
1696845722.5904193-CDS-H-canaliculatus_F_contig1475:1928..20481696845722.5904193-CDS-H-canaliculatus_F_contig1475:1928..2048Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1475 1929..2048 -
1622929219.2312386-CDS-H-canaliculatus_F_contig1475:2272..24561622929219.2312386-CDS-H-canaliculatus_F_contig1475:2272..2456Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1475 2273..2456 -
1696845722.5999603-CDS-H-canaliculatus_F_contig1475:2272..24561696845722.5999603-CDS-H-canaliculatus_F_contig1475:2272..2456Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1475 2273..2456 -
1622929219.2481956-CDS-H-canaliculatus_F_contig1475:4178..43421622929219.2481956-CDS-H-canaliculatus_F_contig1475:4178..4342Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1475 4179..4342 -
1696845722.6087914-CDS-H-canaliculatus_F_contig1475:4178..43421696845722.6087914-CDS-H-canaliculatus_F_contig1475:4178..4342Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1475 4179..4342 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929219.262727-UTR-H-canaliculatus_F_contig1475:4342..43621622929219.262727-UTR-H-canaliculatus_F_contig1475:4342..4362Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1475 4343..4362 -
1696845722.6174288-UTR-H-canaliculatus_F_contig1475:4342..43621696845722.6174288-UTR-H-canaliculatus_F_contig1475:4342..4362Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1475 4343..4362 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1475.3613.1prot_H-canaliculatus_F_contig1475.3613.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1475 4..4342 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1475.3613.1

>prot_H-canaliculatus_F_contig1475.3613.1 ID=prot_H-canaliculatus_F_contig1475.3613.1|Name=mRNA_H-canaliculatus_F_contig1475.3613.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=302bp
MVGLASMAGFVRGTLHWLCDIMVLLLVGAFLAETSPSSPPGEATRAVACH
SPGARAVELLLAAFERLGVPVEWLREILMNEGGIAKGNTRVGGVLKRFRR
RKRGVLASKQQQGQRRGRVCLEGATVSMSDFRVVDSKFASYKITVTPGAG
VGARWEVWRRMADMIKLKAALSKVSAPGVDLPPLPHSYRRSFDASRLTRR
RRSIQHFLQVALEHSVLRSSDALIDFLSPEVAGAVSARPEDFVAENAAAS
DSVVAAGSGSETQTPFSRTRSSSAAAAAPPPPPPPPRSGTAGTPRERVES
GS
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mRNA from alignment at H-canaliculatus_F_contig1475:4..4362-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1475.3613.1 ID=mRNA_H-canaliculatus_F_contig1475.3613.1|Name=mRNA_H-canaliculatus_F_contig1475.3613.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=4359bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1475:4..4362- (Hapterophycus canaliculatus Oshoro5f female)
GAGGAGGTTTGGACCAAAATATGGTTGGTCTAGCCTCTATGGCGGGCTTC
GTAAGGGGCACGCTGCATTGGCTCTGTGATATAATGGTGCTACTACTCGT
TGGTGCCTTTCTAGCGGAGACGTCGCCATCATCGCCACCCGGAGAAGCAA
CGCGTGCCGTTGCTTGTCACAGCCCGGGGGCAAGGTAGGATCACGACGTC
TTTCCATTCGAACGTAGGTTATGTAGCATGCCTGGCATGTGATATGTGAT
AGTTCTTTTGGCTGCGATGGACACGAGAGTCGGTACTGAATTCATGCGTG
AGGCCATTCCTGTACGGAGCCACTGGCGGAAGAATTGTGTGGGACGGCCA
GACGTCGGATCGAGCCAAGCGCAAGAACGAAAGTACCTGCAGTCTCATCC
TCTTGGGAACCTCTTGGACAAGGAGGAACGATTTACGCTAGTCGAGACTC
GAATTTTTGAACGTCGTTCCATTGCTGAATCCTTTTGTGGTTTCAAGAAC
ACTGTCAAGAAGGTTTTTGCCTTGCAGCGGGGCGGAGATAGCTTGTCAAC
TTTGTGTGTTGCACCCGGTGGCATTGAGCGTGATTCCTGTTTCCCCTCGC
TACTCACTCTGTTCTCCCGCATCTACACGAGCCGTCGAGAGATCGAGAAG
GAATGAACAGGGAGTCGAGTTCGCCAACCGACAACACTCGACACAGACAT
ACAGGCCGCACACCGATTCACAGCAAACGCTCATAACGCTCTCGCCCGGA
ACAAAGCAGAAATATTTACTACAAAGCGTCCTTGAGTAACTCGCATCTCC
GTCGAGCAGCACTTGGTAGATACGAAGACCAGCAGAGACGCTTGCGCGTT
TGATGTATGGCACACCAAGGCCTTTCATCTGTCATTGTAATTGATTAGTT
TGTATCGGCAGCGATTGCGCCGCATTATTAGACTTGGATAATTTGACACT
CGTGAGTGCTCTTCGGACGAAAGAGGGTTGCGTTGCGTATTGTGTAGAGT
TGGAGAGGCTCCCTAACGTCTGTAAATATCTAACGCTGGGGGTCGCCATC
CCGCTGCGAAAGTTTTTTGCTGTTACCGTTCGAGGGAGTGAAAAAACTTG
TCGACGTCGCACTGCAACTGCCTCCGGCTGTGTCCCCCCACACCCCCATG
CAGCCATACAGCAGTTGGACAAGTCCCATATTCTGTTCTGTCGTTCCGAG
GTGTTGCAACACATGCAGGTGCCAACAGCTATATTTTAACACTTGTAGTT
AGAATGCTTCCTTCTTTTTTCTTTTTTCTACCTGAGAAGTGTACAAGTAC
ACTGGGGCATGTCCAATGGCGCGGTCGAATGCCCACTTTTTTTGTCATTT
CCTTGACCGATTTTGGCTGTGAAAGCACCTCGGAGAAGAATAGCGCTGTA
CTGTACATTGTATGAACCTCGAACTTCTGTCCTACATTTTTTAAGGTTTA
TATACTCGAGTATATACCTGGTACTCGTACCCCTCTTTCATTTTCCTGGG
TGTGGTTTTGACTGAAAAGACACTGCTCTGAAAGCATGCCAAGATATTGT
TACCGCCCATATAATCGTGATAGACAACACTGCCCGAAATTTACAACGTT
CATTCGATTCATGCGGCGATATGGTTTAGTCATACAAACATATACCTGGT
ACAGCAGACAGTATCGTGGATTATCACATACATTACCCGCTAGCACACAG
CAGCTATTTGACATGCTTGTGAAGTGTACTCAAACATCGTGCAGATAGCT
GTGGGGTAGACTCCAAGGGCTGCATTCTGATACGCCATGCTCGACATTAC
AAATGAGAAATCAAGAACAAGGACCGGTTTCCACGCGAGATGTGCCGCTC
TTAGTTTTTTTGTTTCGTTTTTCACTCTCTTCATGAACGGCGCAATTCTC
TTGTAGGGCTGTTGAGCTCCTGCTGGCGGCGTTCGAGAGACTAGGGGTCC
CTGTAGAATGGCTGAGGGAGATTTTAATGAACGAGGGAGGCATCGCGAAA
GGGAACACAAGGGTGGGGGGCGTGCTCAAGAGGTTTCGGAGACGGAAGCG
TGGTGTACTGGCTTCCAAGCAACAGCAGGGACAGCGAAGGGTGAGGAAAG
CTTGTCGTTGTCGTCGCCTTTGTTGGGATGAATGCTACTGGCGGTAGCGT
GTGTGGCAGTGCTGGTGTGGCTACCGCTGTACGGTAAGCATACGCCGAGC
TTGGGACCCTTTTCCTCCGTGCACGATACATTACATAGCATTACATAGCA
TTACATAGCATTACATTAACAGTATCTTTCCCCGCCTCCGGCATTCGCTC
GCTTGACAAACCAGGGTAGGGTTTGCTTGGAGGGAGCCACCGTGTCTATG
AGCGATTTCCGCGTTGTCGACAGCAAGTTCGCCAGCTACAAGATAACCGT
CACGCCGGGCGCGGGCGTGGGGGCGCGATGGGAGGTGAGGCTGAGGCTGA
GGCTGAGGCTGAGGCAGGAGGCTGACCAGCGCTGGCTGACTCGACAGCAG
AGTACTGTAGCACCTTGCTGTGGATGGGTGCTGGGTGCTGACGTTTTGCG
CTGGGTTGGTCGCGCGAGCTCTGTGCCGATGCCTTCGTGGATATACGGTT
CGCTGTCCGATGAAAACGCAAGTGCTTGTGCCTTTTGAAGAGGTGATTAT
GGGTATTGTGAGCGCTTGTGAAACGCACGAAGCTTGCGCGGGCGTCAAGA
GACAGGAAACGCGACGGCGTTTTCCTCTTTCGTCTGTCACTTCAAGATGG
TGGTTGCAGTCGACGGATGGCGAACATCTTGCGAGAGATATCAGTGTGCG
CAGGCCGTTTTTCCAGTGTTGAGCAGACGGAAAGGAACCATTCGCACGCT
TTGCCGGTTTGCTGCTGTGCTCGCTTTCATGAACGCTCTTGCGATGGGCA
GGTGTGGAGAAGGATGGCGGACATGATCAAGCTGAAGGCAGCGCTGAGCA
AGGTGTCCGCACCAGGCGGTAAGCAAGAAGAGTAGGAAGCGAGAGCAACA
CCGCAAACATGGCGGGAGAGCACCCGACCCGCAGGTGCAAGACTGTCATC
CCTTGCCGCTCAAATAAATGGCACGCCGTAGACACGACACGCGACAGAAG
CCTGTTTTGAGCAGAAATCATCCAGCCTACACCATCCGCTACCACAAGCT
GGCGTTGTTCCAGATCACCGTATTTTCAGCGGTTTTCATCCACAGTTTTT
GCTTGGCAGCGCGAGCAAGTCCATTCCCCTGCTACTGCCGTTTCTCGCGA
TGCCAAGCTTCTCGGTGGTTCTCAACCCAGCCGCTGCCCCCGCCCGCCGC
CGCTGCCTGCTCTTCCGCTGCCCCTGGCTTTGGTGCTCTGCTTTCGCGGG
TGGACAATCGCATGGCCGCGAATGGCCGCAAACGACTCCCGTCACAGTGG
ACCTTCCTCCGTTGCCTCATTCGTACCGGCGCAGCTTTGATGCCAGCCGT
CTCACGAGACGACGCCGGAGCATTCAGCATTTCTTGCAGGTGGCGCTCGA
GCACTCGGTCCTGCGAAGCTCTGATGCTCTGATCGACTTTCTTTCGCCTG
AAGGTATGGCGTGGCAAACGGAGTTGCGAAAGTACGCAGTTGCCGCTGTT
GCTGCTGTTGTCGTAGTCGTGATGGATGCCATCATACCTTTTCCGCTATT
CGTGAGTTTCGTTGCGGTTGGCGCCAGTTGAAAGCGTTACCGTTTTTGCC
AATATTCCGTGAAGTATCTGTGTCTCTTCCGTTGTTCTTCTCACGTTCCG
AACAGCGAACAGCACCACCTAGAGATACGCCATCGCATCTTTGTATCGCG
GTCTGTTTTCAACGGGCCTCCTTACGCGCCCCGCCCCCCCGATCCCCTAC
CATATCTCTCGTAGGGCGTCAAGGAGCATCAGCACTTGCCACAGGCAAAA
GTCACTTGAAGCTGTGTTCTGATTTCGTCGCAGAATTCCAGGTTGCAGCG
TGCTCTCCAGCACTTGATAGCTTTTCTTACTTCGCTCCTTTCTCCGTCAC
CAGTTCGCAACACCCGCTCCCCTCGGGTCAACCCCTTACACCAATGCTCC
CTCTTCCAACTGTCCTCCCCACGCCCCCCTTGCCTCGGCCGCTTTCCCCC
CAACCTCTCCCTTGTTTCGCGTGGCCCTCCCGCCGCCCCAGCAGTTGCCG
GTGCAGTCTCCGCACGCCCCGAAGACTTCGTCGCAGAAAATGCGGCTGCG
TCCGACAGCGTCGTTGCCGCAGGGAGTGGGAGCGAAACCCAGACGCCTTT
CTCGCGAACCCGATCGAGTAGTGCTGCGGCAGCAGCGCCGCCGCCGCCGC
CGCCGCCGCCGCGATCGGGGACGGCAGGCACACCGCGTGAGAGGGTGGAA
AGCGGGAGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1475:4..4362-

>mRNA_H-canaliculatus_F_contig1475.3613.1 ID=mRNA_H-canaliculatus_F_contig1475.3613.1|Name=mRNA_H-canaliculatus_F_contig1475.3613.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1812bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1475:4..4362- (Hapterophycus canaliculatus Oshoro5f female)
ATGGTTGGTCTAGCCTCTATGGCGGGCTTCGTAAGGGGCACGCTGCATTG
GCTCTGTGATATAATGGTGCTACTACTCGTTGGTGCCTTTCTAGCGGAGA
CGTCGCCATCATCGCCACCCGGAGAAGCAACGCGTGCCGTTGCTTGTCAC
AGCCCGGGGGCAAGATGGTTGGTCTAGCCTCTATGGCGGGCTTCGTAAGG
GGCACGCTGCATTGGCTCTGTGATATAATGGTGCTACTACTCGTTGGTGC
CTTTCTAGCGGAGACGTCGCCATCATCGCCACCCGGAGAAGCAACGCGTG
CCGTTGCTTGTCACAGCCCGGGGGCAAGGGCTGTTGAGCTCCTGCTGGCG
GCGTTCGAGAGACTAGGGGTCCCTGTAGAATGGCTGAGGGAGATTTTAAT
GAACGAGGGAGGCATCGCGAAAGGGAACACAAGGGTGGGGGGCGTGCTCA
AGAGGTTTCGGAGACGGAAGCGTGGTGTACTGGCTTCCAAGCAACAGCAG
GGACAGCGAAGGGGCTGTTGAGCTCCTGCTGGCGGCGTTCGAGAGACTAG
GGGTCCCTGTAGAATGGCTGAGGGAGATTTTAATGAACGAGGGAGGCATC
GCGAAAGGGAACACAAGGGTGGGGGGCGTGCTCAAGAGGTTTCGGAGACG
GAAGCGTGGTGTACTGGCTTCCAAGCAACAGCAGGGACAGCGAAGGGGTA
GGGTTTGCTTGGAGGGAGCCACCGTGTCTATGAGCGATTTCCGCGTTGTC
GACAGCAAGTTCGCCAGCTACAAGATAACCGTCACGCCGGGCGCGGGCGT
GGGGGCGCGATGGGAGGGTAGGGTTTGCTTGGAGGGAGCCACCGTGTCTA
TGAGCGATTTCCGCGTTGTCGACAGCAAGTTCGCCAGCTACAAGATAACC
GTCACGCCGGGCGCGGGCGTGGGGGCGCGATGGGAGGTGTGGAGAAGGAT
GGCGGACATGATCAAGCTGAAGGCAGCGCTGAGCAAGGTGTCCGCACCAG
GCGGTGTGGAGAAGGATGGCGGACATGATCAAGCTGAAGGCAGCGCTGAG
CAAGGTGTCCGCACCAGGCGTGGACCTTCCTCCGTTGCCTCATTCGTACC
GGCGCAGCTTTGATGCCAGCCGTCTCACGAGACGACGCCGGAGCATTCAG
CATTTCTTGCAGGTGGCGCTCGAGCACTCGGTCCTGCGAAGCTCTGATGC
TCTGATCGACTTTCTTTCGCCTGAAGTGGACCTTCCTCCGTTGCCTCATT
CGTACCGGCGCAGCTTTGATGCCAGCCGTCTCACGAGACGACGCCGGAGC
ATTCAGCATTTCTTGCAGGTGGCGCTCGAGCACTCGGTCCTGCGAAGCTC
TGATGCTCTGATCGACTTTCTTTCGCCTGAAGTTGCCGGTGCAGTCTCCG
CACGCCCCGAAGACTTCGTCGCAGAAAATGCGGCTGCGTCCGACAGCGTC
GTTGCCGCAGGGAGTGGGAGCGAAACCCAGACGCCTTTCTCGCGAACCCG
ATCGAGTAGTGCTGCGGCAGCAGCGCCGCCGCCGCCGCCGCCGCCGCCGC
GATCGGGGACGGCAGGCACACCGCGTGAGAGGGTGGAAAGCGGGAGCTTG
CCGGTGCAGTCTCCGCACGCCCCGAAGACTTCGTCGCAGAAAATGCGGCT
GCGTCCGACAGCGTCGTTGCCGCAGGGAGTGGGAGCGAAACCCAGACGCC
TTTCTCGCGAACCCGATCGAGTAGTGCTGCGGCAGCAGCGCCGCCGCCGC
CGCCGCCGCCGCCGCGATCGGGGACGGCAGGCACACCGCGTGAGAGGGTG
GAAAGCGGGAGC
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