mRNA_H-canaliculatus_F_contig14748.3612.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14748.3612.1
Unique NamemRNA_H-canaliculatus_F_contig14748.3612.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig14748.3612.1 vs. uniprot
Match: A0A6H5JH56_9PHAE (Pyr_redox_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JH56_9PHAE)

HSP 1 Score: 182 bits (462), Expect = 1.980e-52
Identity = 89/96 (92.71%), Postives = 94/96 (97.92%), Query Frame = 1
Query:    1 KVVVLGTGWAAHSLLKEIDASKFEVTTVSPRNFFLFTPMLAASAVGTVEYRSITEPIRKVNSEANYLEATCTGIDVSRKTITCENVVCEGTTCNIE 288
            +VVVLGTGWAAH+LLKEIDASKFEVTTVSPRNFFLFTPMLAASAVGTVEYRSITEPIRKVN EANYLEATCTGIDV++KTITC+NVVCEGTTC IE
Sbjct:  132 RVVVLGTGWAAHALLKEIDASKFEVTTVSPRNFFLFTPMLAASAVGTVEYRSITEPIRKVNPEANYLEATCTGIDVAQKTITCQNVVCEGTTCTIE 227          
BLAST of mRNA_H-canaliculatus_F_contig14748.3612.1 vs. uniprot
Match: A0A7S0GGU1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GGU1_9STRA)

HSP 1 Score: 139 bits (351), Expect = 1.550e-38
Identity = 63/96 (65.62%), Postives = 83/96 (86.46%), Query Frame = 1
Query:    1 KVVVLGTGWAAHSLLKEIDASKFEVTTVSPRNFFLFTPMLAASAVGTVEYRSITEPIRKVNSEANYLEATCTGIDVSRKTITCENVVCEGTTCNIE 288
            ++V+LGTGW A +LLK+IDAS+F+VT +SPRNFFLFTPMLA ++VGTVEYRSI EP+R +N +A YLEAT T ID+S+ +I+CE+VVC G++C IE
Sbjct:   96 RLVILGTGWGAAALLKQIDASRFDVTVISPRNFFLFTPMLAGASVGTVEYRSIIEPVRDINRKAKYLEATATCIDISKSSISCESVVCAGSSCTIE 191          
BLAST of mRNA_H-canaliculatus_F_contig14748.3612.1 vs. uniprot
Match: A0A7S4IZG0_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IZG0_9STRA)

HSP 1 Score: 144 bits (364), Expect = 1.590e-38
Identity = 67/96 (69.79%), Postives = 81/96 (84.38%), Query Frame = 1
Query:    1 KVVVLGTGWAAHSLLKEIDASKFEVTTVSPRNFFLFTPMLAASAVGTVEYRSITEPIRKVNSEANYLEATCTGIDVSRKTITCENVVCEGTTCNIE 288
            K+VVLG GW A + LK+ID SKF+VT +SPRNFFLFTPMLA SAVGTV+YRSITEP+R++N +ANYLEAT T ID    T++CE+VVCEGT+C IE
Sbjct:   53 KIVVLGVGWGAAAFLKDIDTSKFDVTVISPRNFFLFTPMLAGSAVGTVDYRSITEPVRQINPKANYLEATATSIDPEAGTVSCESVVCEGTSCAIE 148          
BLAST of mRNA_H-canaliculatus_F_contig14748.3612.1 vs. uniprot
Match: A0A835YV14_9STRA (NADH dehydrogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV14_9STRA)

HSP 1 Score: 144 bits (364), Expect = 2.310e-38
Identity = 69/96 (71.88%), Postives = 78/96 (81.25%), Query Frame = 1
Query:    1 KVVVLGTGWAAHSLLKEIDASKFEVTTVSPRNFFLFTPMLAASAVGTVEYRSITEPIRKVNSEANYLEATCTGIDVSRKTITCENVVCEGTTCNIE 288
            KV+VLG GWA+H+ LK ID   ++VT VSPRNFFL TPMLAASAVGTVE+RSITEPIR VN  ANY+EATCT ID   + I CENVVCEGT+C IE
Sbjct:  132 KVIVLGAGWASHAFLKGIDTDMYDVTVVSPRNFFLMTPMLAASAVGTVEFRSITEPIRNVNLGANYIEATCTAIDSDSQEIVCENVVCEGTSCTIE 227          
BLAST of mRNA_H-canaliculatus_F_contig14748.3612.1 vs. uniprot
Match: A0A7S2WJC1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WJC1_9STRA)

HSP 1 Score: 142 bits (359), Expect = 1.590e-37
Identity = 64/96 (66.67%), Postives = 79/96 (82.29%), Query Frame = 1
Query:    1 KVVVLGTGWAAHSLLKEIDASKFEVTTVSPRNFFLFTPMLAASAVGTVEYRSITEPIRKVNSEANYLEATCTGIDVSRKTITCENVVCEGTTCNIE 288
            K+V+LGTGW + + LKEID  K++VT +SPRNFFLFTPMLA S+VGTVEYRSITEPIR++N +A YLE T T ID+  KT+ CE+VVCEG +C IE
Sbjct:  152 KIVILGTGWGSAAFLKEIDTDKYDVTVISPRNFFLFTPMLAGSSVGTVEYRSITEPIREINRKAGYLEGTATNIDIENKTVFCESVVCEGNSCTIE 247          
BLAST of mRNA_H-canaliculatus_F_contig14748.3612.1 vs. uniprot
Match: A0A0G4EWF7_VITBC (Pyr_redox_2 domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EWF7_VITBC)

HSP 1 Score: 140 bits (353), Expect = 9.230e-37
Identity = 63/96 (65.62%), Postives = 79/96 (82.29%), Query Frame = 1
Query:    1 KVVVLGTGWAAHSLLKEIDASKFEVTTVSPRNFFLFTPMLAASAVGTVEYRSITEPIRKVNSEANYLEATCTGIDVSRKTITCENVVCEGTTCNIE 288
            ++VVLGTGW +H+ L  +DASK+EV  +SPRNFFLFTPMLA +A+GTVEYRSIT+PIR VN   +Y EATCT ID  +KT+ C++VVCEGT+C IE
Sbjct:  144 RIVVLGTGWGSHAFLSTVDASKYEVIVISPRNFFLFTPMLAGAALGTVEYRSITDPIRNVNPLVDYYEATCTDIDPVKKTVACQSVVCEGTSCTIE 239          
BLAST of mRNA_H-canaliculatus_F_contig14748.3612.1 vs. uniprot
Match: W7TU07_9STRA (Pyridine nucleotide-disulfide oxidoreductase, FAD/NAD(P)-binding domain protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TU07_9STRA)

HSP 1 Score: 140 bits (352), Expect = 1.540e-36
Identity = 63/96 (65.62%), Postives = 82/96 (85.42%), Query Frame = 1
Query:    1 KVVVLGTGWAAHSLLKEIDASKFEVTTVSPRNFFLFTPMLAASAVGTVEYRSITEPIRKVNSEANYLEATCTGIDVSRKTITCENVVCEGTTCNIE 288
            ++VVLGTGW AH+ L+ +DA K+EV  VSPRNF LFTPMLA SAVGTVE+ SITEPIR+VN  A+YLEATCT ++ ++K+ITC++V+CEG +C+IE
Sbjct:  170 RIVVLGTGWGAHAFLQSVDAVKYEVVVVSPRNFMLFTPMLAGSAVGTVEFLSITEPIRRVNPYADYLEATCTHVNAAQKSITCQSVICEGNSCDIE 265          
BLAST of mRNA_H-canaliculatus_F_contig14748.3612.1 vs. uniprot
Match: B7FXG3_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FXG3_PHATC)

HSP 1 Score: 140 bits (352), Expect = 1.710e-36
Identity = 63/96 (65.62%), Postives = 80/96 (83.33%), Query Frame = 1
Query:    1 KVVVLGTGWAAHSLLKEIDASKFEVTTVSPRNFFLFTPMLAASAVGTVEYRSITEPIRKVNSEANYLEATCTGIDVSRKTITCENVVCEGTTCNIE 288
            +VVVLGTGW + SLLKEID   ++VT +SPRN+FLFTPMLA ++VGTVEYRSITEPIR +N +AN+LEAT T ID    T+TCE+V+CEG +C+I+
Sbjct:  175 RVVVLGTGWGSASLLKEIDTDLYDVTVISPRNYFLFTPMLAGASVGTVEYRSITEPIRAINPQANFLEATATNIDTKTNTVTCESVICEGNSCDIQ 270          
BLAST of mRNA_H-canaliculatus_F_contig14748.3612.1 vs. uniprot
Match: A0A7R9UDT3_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UDT3_9STRA)

HSP 1 Score: 139 bits (349), Expect = 3.460e-36
Identity = 68/97 (70.10%), Postives = 81/97 (83.51%), Query Frame = 1
Query:    1 KVVVLGTGWAAHSLLKEIDASK-FEVTTVSPRNFFLFTPMLAASAVGTVEYRSITEPIRKVNSEANYLEATCTGIDVSRKTITCENVVCEGTTCNIE 288
            KVVVLGTGWA+HSLLK IDA K F V  +SPRN+FLFTPMLA +AVGTVE RSITEPIR+VN  A+YLEAT T I+   K++TC+++VCEGT C+IE
Sbjct:  136 KVVVLGTGWASHSLLKGIDAQKKFNVVVISPRNYFLFTPMLAGAAVGTVEDRSITEPIRRVNKNADYLEATVTAINPDSKSVTCQSIVCEGTACDIE 232          
BLAST of mRNA_H-canaliculatus_F_contig14748.3612.1 vs. uniprot
Match: A0A7S1UIM8_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UIM8_9STRA)

HSP 1 Score: 137 bits (344), Expect = 1.880e-35
Identity = 66/97 (68.04%), Postives = 82/97 (84.54%), Query Frame = 1
Query:    1 KVVVLGTGWAAHSLLKEIDAS-KFEVTTVSPRNFFLFTPMLAASAVGTVEYRSITEPIRKVNSEANYLEATCTGIDVSRKTITCENVVCEGTTCNIE 288
            +VVVLGTGW A+S LK IDA+ K++V  +SPRN+FLFTPMLA +AVGTVEYRSITEPIR+VN +A+YLEAT T ID  RK +T ++VVCEG +C+IE
Sbjct:  141 RVVVLGTGWGAYSFLKSIDAAEKYDVVVISPRNYFLFTPMLAGAAVGTVEYRSITEPIRRVNEDADYLEATVTEIDPERKVVTAQSVVCEGMSCDIE 237          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14748.3612.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JH56_9PHAE1.980e-5292.71Pyr_redox_2 domain-containing protein n=2 Tax=Ecto... [more]
A0A7S0GGU1_9STRA1.550e-3865.63Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
A0A7S4IZG0_9STRA1.590e-3869.79Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A835YV14_9STRA2.310e-3871.88NADH dehydrogenase n=1 Tax=Tribonema minus TaxID=3... [more]
A0A7S2WJC1_9STRA1.590e-3766.67Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A0G4EWF7_VITBC9.230e-3765.63Pyr_redox_2 domain-containing protein n=1 Tax=Vitr... [more]
W7TU07_9STRA1.540e-3665.63Pyridine nucleotide-disulfide oxidoreductase, FAD/... [more]
B7FXG3_PHATC1.710e-3665.63Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7R9UDT3_9STRA3.460e-3670.10Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S1UIM8_9STRA1.880e-3568.04Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14748contigH-canaliculatus_F_contig14748:24..356 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score141.0
Seed ortholog evalue3.4e-31
Seed eggNOG ortholog2850.Phatr26970
KEGG koko:K03885,ko:K17871
KEGG Pathwayko00190,map00190
EggNOG free text desc.Pyridine nucleotide-disulphide oxidoreductase
EggNOG OGs2XB5Y@2836,COG1252@1,KOG2495@2759
EC1.6.5.9,1.6.99.3
COG Functional cat.C
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionNADH dehydrogenase (ubiquinone)
Ec32 orthologEc-10_005810.1
Exons1
Model size333
Cds size333
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929219.1284857-CDS-H-canaliculatus_F_contig14748:23..3561622929219.1284857-CDS-H-canaliculatus_F_contig14748:23..356Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14748 24..356 -
1696845722.540273-CDS-H-canaliculatus_F_contig14748:23..3561696845722.540273-CDS-H-canaliculatus_F_contig14748:23..356Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14748 24..356 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14748.3612.1prot_H-canaliculatus_F_contig14748.3612.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14748 24..356 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14748.3612.1

>prot_H-canaliculatus_F_contig14748.3612.1 ID=prot_H-canaliculatus_F_contig14748.3612.1|Name=mRNA_H-canaliculatus_F_contig14748.3612.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=111bp
KVVVLGTGWAAHSLLKEIDASKFEVTTVSPRNFFLFTPMLAASAVGTVEY
RSITEPIRKVNSEANYLEATCTGIDVSRKTITCENVVCEGTTCNIEVGKA
VCGGGGDREG*
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mRNA from alignment at H-canaliculatus_F_contig14748:24..356-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14748.3612.1 ID=mRNA_H-canaliculatus_F_contig14748.3612.1|Name=mRNA_H-canaliculatus_F_contig14748.3612.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=333bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14748:24..356- (Hapterophycus canaliculatus Oshoro5f female)
AAGGTGGTCGTTTTAGGAACTGGCTGGGCGGCGCACTCGCTCCTGAAAGA GATCGACGCCAGCAAGTTCGAGGTCACCACAGTATCCCCGCGAAACTTCT TCCTCTTCACCCCGATGCTCGCCGCTTCGGCGGTGGGCACAGTGGAGTAC CGCTCCATCACGGAGCCGATCCGCAAGGTTAACTCGGAGGCGAACTACCT GGAGGCCACATGCACGGGGATAGACGTGTCCCGGAAGACCATCACCTGTG AGAACGTGGTCTGCGAGGGCACCACTTGCAACATCGAGGTGGGCAAAGCT GTCTGTGGGGGGGGGGGGGATAGGGAAGGCTAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14748:24..356-

>mRNA_H-canaliculatus_F_contig14748.3612.1 ID=mRNA_H-canaliculatus_F_contig14748.3612.1|Name=mRNA_H-canaliculatus_F_contig14748.3612.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=666bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14748:24..356- (Hapterophycus canaliculatus Oshoro5f female)
AAGGTGGTCGTTTTAGGAACTGGCTGGGCGGCGCACTCGCTCCTGAAAGA
GATCGACGCCAGCAAGTTCGAGGTCACCACAGTATCCCCGCGAAACTTCT
TCCTCTTCACCCCGATGCTCGCCGCTTCGGCGGTGGGCACAGTGGAGTAC
CGCTCCATCACGGAGCCGATCCGCAAGGTTAACTCGGAGGCGAACTACCT
GGAGGCCACATGCACGGGGATAGACGTGTCCCGGAAGACCATCACCTGTG
AGAACGTGGTCTGCGAGGGCACCACTTGCAACATCGAGGTGGGCAAAGCT
GTCTGTGGGGGGGGGGGGGATAGGGAAGGCTAGAAGGTGGTCGTTTTAGG
AACTGGCTGGGCGGCGCACTCGCTCCTGAAAGAGATCGACGCCAGCAAGT
TCGAGGTCACCACAGTATCCCCGCGAAACTTCTTCCTCTTCACCCCGATG
CTCGCCGCTTCGGCGGTGGGCACAGTGGAGTACCGCTCCATCACGGAGCC
GATCCGCAAGGTTAACTCGGAGGCGAACTACCTGGAGGCCACATGCACGG
GGATAGACGTGTCCCGGAAGACCATCACCTGTGAGAACGTGGTCTGCGAG
GGCACCACTTGCAACATCGAGGTGGGCAAAGCTGTCTGTGGGGGGGGGGG
GGATAGGGAAGGCTAG
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