mRNA_H-canaliculatus_F_contig14735.3609.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14735.3609.1
Unique NamemRNA_H-canaliculatus_F_contig14735.3609.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig14735.3609.1 vs. uniprot
Match: D7FHI0_ECTSI (LisH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHI0_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 4.560e-22
Identity = 49/58 (84.48%), Postives = 52/58 (89.66%), Query Frame = 3 
Query:    9 ATTVRLGMHWAPAVQLMHHRGMQALINVVDTMLSQRTMGAETAIHALDALATAALCPL 182
            A TVRLGMHW+PAVQLMHHRGMQALINVVD MLSQR MGAET ++ALDAL TA LCPL
Sbjct:  775 AVTVRLGMHWSPAVQLMHHRGMQALINVVDDMLSQR-MGAETVVYALDALGTAVLCPL 831
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BLAST of mRNA_H-canaliculatus_F_contig14735.3609.1 vs. uniprot
Match: A0A6H5JDL7_9PHAE (LisH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDL7_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 5.520e-21
Identity = 48/58 (82.76%), Postives = 51/58 (87.93%), Query Frame = 3 
Query:    9 ATTVRLGMHWAPAVQLMHHRGMQALINVVDTMLSQRTMGAETAIHALDALATAALCPL 182
            A TVRLGM W+PAVQLMHHRGMQALINVVD MLSQRT GAE  ++ALDAL TAALCPL
Sbjct:  826 AVTVRLGMQWSPAVQLMHHRGMQALINVVDAMLSQRT-GAEAVVYALDALGTAALCPL 882
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14735.3609.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FHI0_ECTSI4.560e-2284.48LisH domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JDL7_9PHAE5.520e-2182.76LisH domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14735contigH-canaliculatus_F_contig14735:105..975 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.1
Seed ortholog evalue1e-14
Seed eggNOG ortholog2880.D7FHI0
Preferred nameVPRBP
KEGG koko:K10744,ko:K11789
KEGG Pathwayko03030,map03030
GOsGO:0000122,GO:0000151,GO:0001650,GO:0001775,GO:0002200,GO:0002376,GO:0002520,GO:0002521,GO:0002562,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0006139,GO:0006259,GO:0006310,GO:0006325,GO:0006355,GO:0006357,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007275,GO:0008134,GO:0008150,GO:0008152,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016301,GO:0016310,GO:0016444,GO:0016569,GO:0016570,GO:0016572,GO:0016740,GO:0016772,GO:0016773,GO:0018107,GO:0018193,GO:0018210,GO:0019219,GO:0019222,GO:0019538,GO:0030097,GO:0030098,GO:0030154,GO:0030183,GO:0030331,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031461,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033151,GO:0034641,GO:0035173,GO:0035184,GO:0035212,GO:0035257,GO:0035258,GO:0035405,GO:0036211,GO:0040008,GO:0042113,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0045321,GO:0045892,GO:0045934,GO:0046483,GO:0046649,GO:0048513,GO:0048519,GO:0048523,GO:0048534,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0051427,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0080008,GO:0080090,GO:0090304,GO:0140096,GO:1901360,GO:1901564,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:1990164,GO:1990234,GO:1990244,GO:1990245,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.histone kinase activity (H2A-T120 specific)
EggNOG OGsKOG1832@1,KOG1832@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03032,ko04121
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size184
Cds size153
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14735.3609.1prot_H-canaliculatus_F_contig14735.3609.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14735 105..946 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929218.635964-CDS-H-canaliculatus_F_contig14735:104..2091622929218.635964-CDS-H-canaliculatus_F_contig14735:104..209Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14735 105..209 -
1696845722.3265884-CDS-H-canaliculatus_F_contig14735:104..2091696845722.3265884-CDS-H-canaliculatus_F_contig14735:104..209Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14735 105..209 -
1622929218.6513941-CDS-H-canaliculatus_F_contig14735:898..9461622929218.6513941-CDS-H-canaliculatus_F_contig14735:898..946Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14735 899..946 -
1696845722.3381283-CDS-H-canaliculatus_F_contig14735:898..9461696845722.3381283-CDS-H-canaliculatus_F_contig14735:898..946Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14735 899..946 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929218.699625-UTR-H-canaliculatus_F_contig14735:946..9751622929218.699625-UTR-H-canaliculatus_F_contig14735:946..975Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14735 947..975 -
1696845722.3472035-UTR-H-canaliculatus_F_contig14735:946..9751696845722.3472035-UTR-H-canaliculatus_F_contig14735:946..975Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14735 947..975 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14735.3609.1

>prot_H-canaliculatus_F_contig14735.3609.1 ID=prot_H-canaliculatus_F_contig14735.3609.1|Name=mRNA_H-canaliculatus_F_contig14735.3609.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=51bp
MHWAPAVQLMHHRGMQALINVVDTMLSQRTMGAETAIHALDALATAALCP
L
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mRNA from alignment at H-canaliculatus_F_contig14735:105..975-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14735.3609.1 ID=mRNA_H-canaliculatus_F_contig14735.3609.1|Name=mRNA_H-canaliculatus_F_contig14735.3609.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=871bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14735:105..975- (Hapterophycus canaliculatus Oshoro5f female)
GGGGCGGGGCCACCACCGTACGGCTCGGGATGCACTGGGCCCCGGCCGTG
CAGCTAATGCACCACCGAGGGATGCAGGTGCGCGGTGCGGGATCGGGGTC
GGGACTTTTGGGGCAGTGGTTCCGGCGGCTGCGAGAGGCCCCGCGCCTCG
CTCCTTGCGGATCGTGGTCTGCTTATTTTGAAGAAAGACATGACAGCACC
GTAGGAACGCCTCCTGCGGTACGTCGTGTGAGACGTACCTCGAGGTTCCT
GACGACTTCTCAACAGTGAGGGGGTTCATTGTGCATGTAGGGACGAAAAC
ATGAAAACAAAGAAGTTGTGATACTCCGTACAGCAGGGTGTGCGGTGGAG
GATTGTGCATTGAGTGTCAATTGGTGGGTTCTGTGTCTGATTTTCTTTTT
TATCGGTGGGGGAGGGGGGGGGGGGGGGGGGGTGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGCTAAGAAGAGGATGCTAGCGCCTTTCTTT
TTTTTGCTCCGGGTACGGTACCGCCGACGAGGCGAGTGGAGCTATCAGAG
AGGGGTCATGGTGGTTAGTGGCAGTAGACGTGATGGGCGTGTAGCCTAAA
TCGCTTCCAGGCCTCGGCCTACTTCGTTTCATCCCCGAAAGACTTTTACT
ACTTCTGTTCCAACTAAACAGCAGCTTACCAACGGCCGTCGATCTCGTTG
TTTTTTGGATCCGCCCCGCGCGCATTACGGCGAATTTATCTCCATCTTCT
TTCCCCGTCGTCGCAGGCACTGATCAACGTGGTGGACACGATGTTGAGCC
AGAGGACGATGGGAGCTGAGACCGCGATCCACGCCCTCGATGCACTCGCC
ACTGCCGCACTCTGCCCCTTG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14735:105..975-

>mRNA_H-canaliculatus_F_contig14735.3609.1 ID=mRNA_H-canaliculatus_F_contig14735.3609.1|Name=mRNA_H-canaliculatus_F_contig14735.3609.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=306bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14735:105..975- (Hapterophycus canaliculatus Oshoro5f female)
ATGCACTGGGCCCCGGCCGTGCAGCTAATGCACCACCGAGGGATGCAGAT
GCACTGGGCCCCGGCCGTGCAGCTAATGCACCACCGAGGGATGCAGGCAC
TGATCAACGTGGTGGACACGATGTTGAGCCAGAGGACGATGGGAGCTGAG
ACCGCGATCCACGCCCTCGATGCACTCGCCACTGCCGCACTCTGCCCCTT
GGCACTGATCAACGTGGTGGACACGATGTTGAGCCAGAGGACGATGGGAG
CTGAGACCGCGATCCACGCCCTCGATGCACTCGCCACTGCCGCACTCTGC
CCCTTG
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