mRNA_H-canaliculatus_F_contig14734.3608.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14734.3608.1
Unique NamemRNA_H-canaliculatus_F_contig14734.3608.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig14734.3608.1 vs. uniprot
Match: A0A6H5L3D5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3D5_9PHAE)

HSP 1 Score: 183 bits (464), Expect = 3.230e-55
Identity = 107/170 (62.94%), Postives = 127/170 (74.71%), Query Frame = 1 
Query:    1 GLNISRHAKSGLASLNSXXXXXG--GVAASPAHGVDNRPAIVRAASSLNESRHKLTQGLRRTVSRGQISVNSDYDGSQQPRSPEAFGHTMLLDEGSNVLLLKGTLRTRLGSTAFPSLREERAVTIIRDVGGPVEFSEGSVLFIMPAMLMARASAGHQMLMREIEQRYREI 504
            GLN SRH   G ASLN+     G  G        VD RPAIVRAA+SLNESRHKLTQGLRRTVSR  +   SD D  Q  +SP    H+M+++EGS +L+LKGTLR R+G+    SL+EE+AVTIIRDVGGPVEF+EGSV+FIMPA+LMARAS  HQMLMREIEQR+R++
Sbjct:   37 GLNSSRHGHGG-ASLNTSRHAGGTGGGXXXXXGAVDTRPAIVRAATSLNESRHKLTQGLRRTVSRSHL---SDADQGQM-QSPGPICHSMVVEEGSYILILKGTLRRRVGTATLSSLKEEKAVTIIRDVGGPVEFTEGSVVFIMPAVLMARASTAHQMLMREIEQRHRDL 201
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BLAST of mRNA_H-canaliculatus_F_contig14734.3608.1 vs. uniprot
Match: D8LKR0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKR0_ECTSI)

HSP 1 Score: 183 bits (464), Expect = 1.990e-53
Identity = 110/176 (62.50%), Postives = 129/176 (73.30%), Query Frame = 1 
Query:    1 GLNISRHAKSGLASLNSXXXXXGGVAASPAHG--------VDNRPAIVRAASSLNESRHKLTQGLRRTVSRGQISVNSDYDGSQQPRSPEAFGHTMLLDEGSNVLLLKGTLRTRLGSTAFPSLREERAVTIIRDVGGPVEFSEGSVLFIMPAMLMARASAGHQMLMREIEQRYREI 504
            GLN SRH   G ASLN+     GG                VD RPAIVRAA+SLNESRHKLTQGLRRTVSRGQ+   SD D  Q   SP    H+M+++EGSN+L+LKGTLR R+G+    SL+EE+AVTIIR VGGPVEF+EGSV+FIMPA+LMARASA HQMLMREIEQR+R++
Sbjct:   37 GLNSSRHGHGG-ASLNTSRH--GGXXXXXXXXXXXXXXXXVDTRPAIVRAATSLNESRHKLTQGLRRTVSRGQL---SDADQGQM-HSPVPICHSMVVEEGSNILILKGTLRRRVGTATLSSLKEEKAVTIIRGVGGPVEFTEGSVVFIMPAVLMARASAAHQMLMREIEQRHRDL 205
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14734.3608.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L3D5_9PHAE3.230e-5562.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LKR0_ECTSI1.990e-5362.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14734contigH-canaliculatus_F_contig14734:155..1365 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-07_004470.1
Exons3
Model size504
Cds size504
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14734.3608.1prot_H-canaliculatus_F_contig14734.3608.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14734 155..1365 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929218.502392-CDS-H-canaliculatus_F_contig14734:154..3221622929218.502392-CDS-H-canaliculatus_F_contig14734:154..322Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14734 155..322 +
1696845722.293515-CDS-H-canaliculatus_F_contig14734:154..3221696845722.293515-CDS-H-canaliculatus_F_contig14734:154..322Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14734 155..322 +
1622929218.5225778-CDS-H-canaliculatus_F_contig14734:765..9291622929218.5225778-CDS-H-canaliculatus_F_contig14734:765..929Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14734 766..929 +
1696845722.3043568-CDS-H-canaliculatus_F_contig14734:765..9291696845722.3043568-CDS-H-canaliculatus_F_contig14734:765..929Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14734 766..929 +
1622929218.5358956-CDS-H-canaliculatus_F_contig14734:1193..13651622929218.5358956-CDS-H-canaliculatus_F_contig14734:1193..1365Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14734 1194..1365 +
1696845722.3136797-CDS-H-canaliculatus_F_contig14734:1193..13651696845722.3136797-CDS-H-canaliculatus_F_contig14734:1193..1365Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14734 1194..1365 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14734.3608.1

>prot_H-canaliculatus_F_contig14734.3608.1 ID=prot_H-canaliculatus_F_contig14734.3608.1|Name=mRNA_H-canaliculatus_F_contig14734.3608.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=168bp
GLNISRHAKSGLASLNSSRHAGGGVAASPAHGVDNRPAIVRAASSLNESR
HKLTQGLRRTVSRGQISVNSDYDGSQQPRSPEAFGHTMLLDEGSNVLLLK
GTLRTRLGSTAFPSLREERAVTIIRDVGGPVEFSEGSVLFIMPAMLMARA
SAGHQMLMREIEQRYREI
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mRNA from alignment at H-canaliculatus_F_contig14734:155..1365+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14734.3608.1 ID=mRNA_H-canaliculatus_F_contig14734.3608.1|Name=mRNA_H-canaliculatus_F_contig14734.3608.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1211bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14734:155..1365+ (Hapterophycus canaliculatus Oshoro5f female)
GGCCTCAACATCAGCCGGCATGCGAAGAGCGGCCTGGCTTCCCTCAACTC
CAGCCGCCACGCCGGAGGAGGCGTGGCCGCTTCGCCGGCCCACGGCGTCG
ACAACAGGCCCGCCATCGTCCGCGCCGCCTCGTCGCTCAACGAGAGCCGG
CACAAGCTGACTCAGGGGGTGAGCGGGGGGTCAAGCATTTGGTAGTCAGT
GCCAAGGGTGAGGGGTGATTTTTTGGAACTTTTTTTTGCGGCGTCTCGGA
TGATCGAGGAGCAGCGCCACGTGACTAGAGGCGCGCGTATGGCTACTTGT
ACCGCCGGTATAGGCTAGGTGATGGAACGGAACGGGGGCAAGGGAGGGGG
TGCGTGTGTGTTACTGAAGAGGTGATTTCTCATCGCCGGAGGAGATCAGA
AATGTGCTGCATTTCGGTTTTGTTCAGTCGGGGGCACGCCCAACCCTGTA
AAGTCCTCAAGAAAGTTGACCACTTTCGAACAGGAGCAATCTTTCTGGTG
TGAATATGGTCGCTGCCGAGGGAACTATCTCCACGCCTTCCTCTCTTTCT
CTCTTTCTCTCTCTCTGTAACCCCCCTCTCTCTCATTATCCACTCTTTTG
CTCTCCCACAGCTCCGGCGCACCGTCAGCCGGGGCCAGATTAGCGTCAAC
TCTGACTACGACGGGAGCCAGCAGCCGCGCTCCCCGGAGGCGTTCGGCCA
CACCATGCTGCTTGACGAGGGTTCTAACGTCCTGCTCCTCAAGGGGACCC
TACGCACAAGGCTGGGATCCACCGCGTAAGTCCACGTTGCGACCCCTCCG
TTTTGTCAGACTTGGTAAACCTTTCTTCAAGCTTGCTGCATATTTTTTGT
GTCTTTCTCCTCTTCTGTGTCCCGTGGGAGGGATGGGATGAACGTTGTTG
ATATTTCGGGCGTCTTCCTCCTTCTCCGATCAACACGAGCGTTGAATCTC
GATCTCGGGGCGCCGGGGCGACATTTGCTGGTCTTCTGACGTATCGGTGT
TGCTTGATGCACGCAATTGCGCGTGGTGATGACACGCAGGTTCCCGTCGC
TGAGGGAGGAGAGGGCGGTCACCATCATCAGAGACGTGGGGGGCCCCGTG
GAATTCTCGGAGGGATCCGTGCTCTTCATCATGCCGGCCATGCTCATGGC
AAGGGCCTCTGCGGGCCACCAGATGCTGATGCGCGAGATCGAGCAGAGGT
ACCGCGAGATA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14734:155..1365+

>mRNA_H-canaliculatus_F_contig14734.3608.1 ID=mRNA_H-canaliculatus_F_contig14734.3608.1|Name=mRNA_H-canaliculatus_F_contig14734.3608.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1008bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14734:155..1365+ (Hapterophycus canaliculatus Oshoro5f female)
GGCCTCAACATCAGCCGGCATGCGAAGAGCGGCCTGGCTTCCCTCAACTC
CAGCCGCCACGCCGGAGGAGGCGTGGCCGCTTCGCCGGCCCACGGCGTCG
ACAACAGGCCCGCCATCGTCCGCGCCGCCTCGTCGCTCAACGAGAGCCGG
CACAAGCTGACTCAGGGGGGCCTCAACATCAGCCGGCATGCGAAGAGCGG
CCTGGCTTCCCTCAACTCCAGCCGCCACGCCGGAGGAGGCGTGGCCGCTT
CGCCGGCCCACGGCGTCGACAACAGGCCCGCCATCGTCCGCGCCGCCTCG
TCGCTCAACGAGAGCCGGCACAAGCTGACTCAGGGGCTCCGGCGCACCGT
CAGCCGGGGCCAGATTAGCGTCAACTCTGACTACGACGGGAGCCAGCAGC
CGCGCTCCCCGGAGGCGTTCGGCCACACCATGCTGCTTGACGAGGGTTCT
AACGTCCTGCTCCTCAAGGGGACCCTACGCACAAGGCTGGGATCCACCGC
CTCCGGCGCACCGTCAGCCGGGGCCAGATTAGCGTCAACTCTGACTACGA
CGGGAGCCAGCAGCCGCGCTCCCCGGAGGCGTTCGGCCACACCATGCTGC
TTGACGAGGGTTCTAACGTCCTGCTCCTCAAGGGGACCCTACGCACAAGG
CTGGGATCCACCGCGTTCCCGTCGCTGAGGGAGGAGAGGGCGGTCACCAT
CATCAGAGACGTGGGGGGCCCCGTGGAATTCTCGGAGGGATCCGTGCTCT
TCATCATGCCGGCCATGCTCATGGCAAGGGCCTCTGCGGGCCACCAGATG
CTGATGCGCGAGATCGAGCAGAGGTACCGCGAGATAGTTCCCGTCGCTGA
GGGAGGAGAGGGCGGTCACCATCATCAGAGACGTGGGGGGCCCCGTGGAA
TTCTCGGAGGGATCCGTGCTCTTCATCATGCCGGCCATGCTCATGGCAAG
GGCCTCTGCGGGCCACCAGATGCTGATGCGCGAGATCGAGCAGAGGTACC
GCGAGATA
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