mRNA_H-canaliculatus_F_contig1473.3607.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1473.3607.1
Unique NamemRNA_H-canaliculatus_F_contig1473.3607.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1473.3607.1 vs. uniprot
Match: D7G0F9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0F9_ECTSI)

HSP 1 Score: 64.7 bits (156), Expect = 1.170e-9
Identity = 28/29 (96.55%), Postives = 28/29 (96.55%), Query Frame = -2 
Query:  279 QPHIKLFWQALREFTPQERSMLIKFTWGR 365
            QPHIK FWQALREFTPQERSMLIKFTWGR
Sbjct: 1468 QPHIKFFWQALREFTPQERSMLIKFTWGR 1496
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BLAST of mRNA_H-canaliculatus_F_contig1473.3607.1 vs. uniprot
Match: A0A6H5K114_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K114_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 1.200e-9
Identity = 28/29 (96.55%), Postives = 28/29 (96.55%), Query Frame = -2 
Query:  279 QPHIKLFWQALREFTPQERSMLIKFTWGR 365
            QPHIK FWQALREFTPQERSMLIKFTWGR
Sbjct: 5687 QPHIKFFWQALREFTPQERSMLIKFTWGR 5715
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1473.3607.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G0F9_ECTSI1.170e-996.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K114_9PHAE1.200e-996.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1473contigH-canaliculatus_F_contig1473:20622..20987 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size367
Cds size366
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929218.4246192-CDS-H-canaliculatus_F_contig1473:20621..209871622929218.4246192-CDS-H-canaliculatus_F_contig1473:20621..20987Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1473 20622..20987 +
1696845722.281724-CDS-H-canaliculatus_F_contig1473:20621..209871696845722.281724-CDS-H-canaliculatus_F_contig1473:20621..20987Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1473 20622..20987 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1473.3607.1prot_H-canaliculatus_F_contig1473.3607.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1473 20622..20987 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1473.3607.1

>prot_H-canaliculatus_F_contig1473.3607.1 ID=prot_H-canaliculatus_F_contig1473.3607.1|Name=mRNA_H-canaliculatus_F_contig1473.3607.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=122bp
SRTIRPSNTISRCVNVPFYRSAHLEKKRIVGNRNMNFFTNPNQIDGVLPG
TVQLCSCRAFVWTRACARVRPRRDCPVSQERNTHTHTPEALTHRPHVNLI
SIDRSCGVNSRRACQNSLMCGC
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mRNA from alignment at H-canaliculatus_F_contig1473:20622..20987+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1473.3607.1 ID=mRNA_H-canaliculatus_F_contig1473.3607.1|Name=mRNA_H-canaliculatus_F_contig1473.3607.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=366bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1473:20622..20987+ (Hapterophycus canaliculatus Oshoro5f female)
TCCAGAACAATTCGACCAAGTAACACAATTTCCCGTTGCGTAAATGTACC
TTTTTACCGCAGTGCACATCTTGAAAAAAAAAGGATTGTCGGGAATCGGA
ACATGAACTTTTTTACCAACCCTAATCAAATCGACGGTGTTTTGCCAGGG
ACAGTGCAATTGTGCTCTTGTCGTGCTTTTGTTTGGACACGTGCTTGTGC
ACGTGTTCGGCCTCGTCGTGACTGTCCTGTTTCGCAAGAACGTAACACAC
ATACACATACCCCAGAGGCTCTGACTCACCGTCCCCACGTGAACTTAATC
AGCATCGACCGCTCTTGTGGGGTGAACTCTCGTAGGGCCTGCCAAAATAG
CTTGATGTGCGGCTGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1473:20622..20987+

>mRNA_H-canaliculatus_F_contig1473.3607.1 ID=mRNA_H-canaliculatus_F_contig1473.3607.1|Name=mRNA_H-canaliculatus_F_contig1473.3607.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=732bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1473:20622..20987+ (Hapterophycus canaliculatus Oshoro5f female)
TCCAGAACAATTCGACCAAGTAACACAATTTCCCGTTGCGTAAATGTACC
TTTTTACCGCAGTGCACATCTTGAAAAAAAAAGGATTGTCGGGAATCGGA
ACATGAACTTTTTTACCAACCCTAATCAAATCGACGGTGTTTTGCCAGGG
ACAGTGCAATTGTGCTCTTGTCGTGCTTTTGTTTGGACACGTGCTTGTGC
ACGTGTTCGGCCTCGTCGTGACTGTCCTGTTTCGCAAGAACGTAACACAC
ATACACATACCCCAGAGGCTCTGACTCACCGTCCCCACGTGAACTTAATC
AGCATCGACCGCTCTTGTGGGGTGAACTCTCGTAGGGCCTGCCAAAATAG
CTTGATGTGCGGCTGCTCCAGAACAATTCGACCAAGTAACACAATTTCCC
GTTGCGTAAATGTACCTTTTTACCGCAGTGCACATCTTGAAAAAAAAAGG
ATTGTCGGGAATCGGAACATGAACTTTTTTACCAACCCTAATCAAATCGA
CGGTGTTTTGCCAGGGACAGTGCAATTGTGCTCTTGTCGTGCTTTTGTTT
GGACACGTGCTTGTGCACGTGTTCGGCCTCGTCGTGACTGTCCTGTTTCG
CAAGAACGTAACACACATACACATACCCCAGAGGCTCTGACTCACCGTCC
CCACGTGAACTTAATCAGCATCGACCGCTCTTGTGGGGTGAACTCTCGTA
GGGCCTGCCAAAATAGCTTGATGTGCGGCTGC
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