mRNA_H-canaliculatus_F_contig14724.3606.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14724.3606.1
Unique NamemRNA_H-canaliculatus_F_contig14724.3606.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig14724.3606.1 vs. uniprot
Match: D8LML3_ECTSI (Imidazole glycerol phosphate synthase hisHF n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LML3_ECTSI)

HSP 1 Score: 139 bits (349), Expect = 9.510e-37
Identity = 65/78 (83.33%), Postives = 69/78 (88.46%), Query Frame = 1 
Query:   19 KVIIFPGVGSFGSAMETLNAKGFTEPLAAYIKQDRPFFGICLGMQTLFDGSEETPGLKGLGIIPGMVASFDPTKVRCP 252
            +VI+FPGVGSFGSAMETLN KGFT PL  YIKQDR FFGICLGMQTLFDGS+ETPGLKGLG+IPGMVASFDP K   P
Sbjct:   59 QVIVFPGVGSFGSAMETLNDKGFTGPLTEYIKQDRAFFGICLGMQTLFDGSDETPGLKGLGVIPGMVASFDPAKTAVP 136
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BLAST of mRNA_H-canaliculatus_F_contig14724.3606.1 vs. uniprot
Match: A0A7S1XZU5_9STRA (Imidazole glycerol phosphate synthase hisHF n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XZU5_9STRA)

HSP 1 Score: 117 bits (294), Expect = 4.810e-29
Identity = 51/72 (70.83%), Postives = 63/72 (87.50%), Query Frame = 1 
Query:   19 KVIIFPGVGSFGSAMETLNAKGFTEPLAAYIKQDRPFFGICLGMQTLFDGSEETPGLKGLGIIPGMVASFDP 234
            +VI+FPGVG+FGSAME+L++ G+TEPL  Y++  RP+FGICLGMQTLF+GSEE+PGL GLGIIPG V  FDP
Sbjct:   72 RVIVFPGVGAFGSAMESLDSHGYTEPLKEYLRSGRPYFGICLGMQTLFEGSEESPGLSGLGIIPGQVTKFDP 143
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BLAST of mRNA_H-canaliculatus_F_contig14724.3606.1 vs. uniprot
Match: A0A835ZC23_9STRA (Imidazole glycerol phosphate synthase hisHF n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC23_9STRA)

HSP 1 Score: 116 bits (291), Expect = 1.130e-28
Identity = 54/78 (69.23%), Postives = 64/78 (82.05%), Query Frame = 1 
Query:   19 KVIIFPGVGSFGSAMETLNAKGFTEPLAAYIKQDRPFFGICLGMQTLFDGSEETPGLKGLGIIPGMVASFDPTKVRCP 252
            +VIIFPGVGSFG+AM+TL  KG+TEPL AY+  +RPFFGICLGMQTLF+ SEE+P  KGLGIIPG V  FD ++V  P
Sbjct:   45 EVIIFPGVGSFGNAMDTLEGKGYTEPLKAYLAANRPFFGICLGMQTLFESSEESPEHKGLGIIPGAVTQFDSSQVSVP 122
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BLAST of mRNA_H-canaliculatus_F_contig14724.3606.1 vs. uniprot
Match: A0A7S0HSR2_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0HSR2_9CRYP)

HSP 1 Score: 110 bits (275), Expect = 2.180e-28
Identity = 49/80 (61.25%), Postives = 61/80 (76.25%), Query Frame = 1 
Query:   13 NEKVIIFPGVGSFGSAMETLNAKGFTEPLAAYIKQDRPFFGICLGMQTLFDGSEETPGLKGLGIIPGMVASFDPTKVRCP 252
            N  ++IFPGVGSFG  ++ L+ KGF EPL AY+K  R F+GICLGMQ+LF+GSEETPG+ GLGI+PG+V  F  T V  P
Sbjct:   43 NAHILIFPGVGSFGVCIDNLHKKGFFEPLKAYLKSGRAFYGICLGMQSLFEGSEETPGVAGLGIVPGVVGKFSDTSVSVP 122
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BLAST of mRNA_H-canaliculatus_F_contig14724.3606.1 vs. uniprot
Match: A0A7S1HV96_9EUGL (Imidazole glycerol phosphate synthase hisHF n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1HV96_9EUGL)

HSP 1 Score: 112 bits (281), Expect = 2.470e-27
Identity = 50/77 (64.94%), Postives = 62/77 (80.52%), Query Frame = 1 
Query:    4 ETRNEKVIIFPGVGSFGSAMETLNAKGFTEPLAAYIKQDRPFFGICLGMQTLFDGSEETPGLKGLGIIPGMVASFDP 234
            E  + K +IFPGVG+FGS ME LN+ GFTEPL  YI+  +P+FGICLG+QTLF+GS+E+PG  GLGIIPG+V  FDP
Sbjct:   37 ELASAKKLIFPGVGAFGSCMERLNSLGFTEPLKEYIRSGKPYFGICLGLQTLFEGSDESPGTTGLGIIPGLVTLFDP 113
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BLAST of mRNA_H-canaliculatus_F_contig14724.3606.1 vs. uniprot
Match: A0A5A8EEQ6_CAFRO (Imidazole glycerol phosphate synthase hisHF n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EEQ6_CAFRO)

HSP 1 Score: 112 bits (280), Expect = 3.920e-27
Identity = 48/76 (63.16%), Postives = 61/76 (80.26%), Query Frame = 1 
Query:    1 NETRNEKVIIFPGVGSFGSAMETLNAKGFTEPLAAYIKQDRPFFGICLGMQTLFDGSEETPGLKGLGIIPGMVASF 228
            ++ R  KV++FPGVG+FGSAMETL A+GF EPL  Y+  DRPF GIC+GMQTLF+ SEE+PG+ GLG+IPG +  F
Sbjct:   46 DDIRTAKVLVFPGVGAFGSAMETLTARGFAEPLKEYLAADRPFLGICIGMQTLFEASEESPGVAGLGVIPGTITRF 121
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BLAST of mRNA_H-canaliculatus_F_contig14724.3606.1 vs. uniprot
Match: A0A5A8CIG5_CAFRO (Acetyl-CoA hydrolase n=4 Tax=Sar TaxID=2698737 RepID=A0A5A8CIG5_CAFRO)

HSP 1 Score: 112 bits (280), Expect = 4.940e-27
Identity = 48/76 (63.16%), Postives = 61/76 (80.26%), Query Frame = 1 
Query:    1 NETRNEKVIIFPGVGSFGSAMETLNAKGFTEPLAAYIKQDRPFFGICLGMQTLFDGSEETPGLKGLGIIPGMVASF 228
            ++ R  KV++FPGVG+FGSAMETL A+GF EPL  Y+  DRPF GIC+GMQTLF+ SEE+PG+ GLG+IPG +  F
Sbjct:   46 DDIRTAKVLVFPGVGAFGSAMETLTARGFAEPLKEYLAADRPFLGICIGMQTLFEASEESPGVAGLGVIPGTITRF 121
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BLAST of mRNA_H-canaliculatus_F_contig14724.3606.1 vs. uniprot
Match: A0A7S4LNC4_9EUGL (Imidazole glycerol phosphate synthase hisHF n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4LNC4_9EUGL)

HSP 1 Score: 111 bits (277), Expect = 8.870e-27
Identity = 50/84 (59.52%), Postives = 62/84 (73.81%), Query Frame = 1 
Query:    1 NETRNEKVIIFPGVGSFGSAMETLNAKGFTEPLAAYIKQDRPFFGICLGMQTLFDGSEETPGLKGLGIIPGMVASFDPTKVRCP 252
            NE  + K +IFPGVG+FGS ME LN  GFT+PL  YI   +P+FGICLG+QTLF+GSEE+PG  GLG+IPGMV  F+   +  P
Sbjct:   38 NELSDAKKLIFPGVGAFGSCMERLNTLGFTQPLKDYIASGKPYFGICLGLQTLFEGSEESPGTAGLGVIPGMVTKFNSDTLSVP 121
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BLAST of mRNA_H-canaliculatus_F_contig14724.3606.1 vs. uniprot
Match: L1JDA4_GUITC (GATase domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JDA4_GUITC)

HSP 1 Score: 110 bits (274), Expect = 1.490e-26
Identity = 49/77 (63.64%), Postives = 60/77 (77.92%), Query Frame = 1 
Query:   22 VIIFPGVGSFGSAMETLNAKGFTEPLAAYIKQDRPFFGICLGMQTLFDGSEETPGLKGLGIIPGMVASFDPTKVRCP 252
            ++IFPGVGSFG  ++ L+ KGF EPL AY+K  R F+GICLGMQ+LF+GSEETPGL GLGI+PG+V  F  T V  P
Sbjct:   42 ILIFPGVGSFGVCIDNLHKKGFFEPLKAYLKSGRAFYGICLGMQSLFEGSEETPGLAGLGIVPGIVGKFSDTSVSVP 118
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BLAST of mRNA_H-canaliculatus_F_contig14724.3606.1 vs. uniprot
Match: A0A7S1CMV5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CMV5_9STRA)

HSP 1 Score: 106 bits (264), Expect = 1.830e-26
Identity = 46/69 (66.67%), Postives = 56/69 (81.16%), Query Frame = 1 
Query:   25 IIFPGVGSFGSAMETLNAKGFTEPLAAYIKQDRPFFGICLGMQTLFDGSEETPGLKGLGIIPGMVASFD 231
            ++FPGVGSFGSAM  L ++G   PL AY+   +PFFGICLGMQTLF+GSEE+PG+ GLG+IPGMV  FD
Sbjct:   75 VVFPGVGSFGSAMAALESRGLVGPLKAYLASGKPFFGICLGMQTLFEGSEESPGVAGLGVIPGMVRRFD 143
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14724.3606.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LML3_ECTSI9.510e-3783.33Imidazole glycerol phosphate synthase hisHF n=2 Ta... [more]
A0A7S1XZU5_9STRA4.810e-2970.83Imidazole glycerol phosphate synthase hisHF n=2 Ta... [more]
A0A835ZC23_9STRA1.130e-2869.23Imidazole glycerol phosphate synthase hisHF n=1 Ta... [more]
A0A7S0HSR2_9CRYP2.180e-2861.25Hypothetical protein (Fragment) n=1 Tax=Hanusia ph... [more]
A0A7S1HV96_9EUGL2.470e-2764.94Imidazole glycerol phosphate synthase hisHF n=1 Ta... [more]
A0A5A8EEQ6_CAFRO3.920e-2763.16Imidazole glycerol phosphate synthase hisHF n=2 Ta... [more]
A0A5A8CIG5_CAFRO4.940e-2763.16Acetyl-CoA hydrolase n=4 Tax=Sar TaxID=2698737 Rep... [more]
A0A7S4LNC4_9EUGL8.870e-2759.52Imidazole glycerol phosphate synthase hisHF n=1 Ta... [more]
L1JDA4_GUITC1.490e-2663.64GATase domain-containing protein n=1 Tax=Guillardi... [more]
A0A7S1CMV5_9STRA1.830e-2666.67Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14724contigH-canaliculatus_F_contig14724:1407..2089 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score141.0
Seed ortholog evalue2.6e-31
Seed eggNOG ortholog2880.D8LML3
Preferred nameHIS7
KEGG rclassRC00010,RC00074,RC01190,RC01943
KEGG koko:K01493,ko:K01663
KEGG ReactionR01663,R04558
KEGG Pathwayko00240,ko00340,ko01100,ko01110,ko01230,map00240,map00340,map01100,map01110,map01230
KEGG ModuleM00026,M00429
GOsGO:0000105,GO:0000107,GO:0003674,GO:0003824,GO:0004359,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0016053,GO:0016740,GO:0016757,GO:0016763,GO:0016787,GO:0016810,GO:0016811,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
EggNOG free text desc.imidazoleglycerol-phosphate synthase activity
EggNOG OGsCOG0107@1,KOG0623@2759
EC3.5.4.12
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko02044
Hectar predicted targeting categoryother localisation
Exons2
Model size252
Cds size252
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929218.350308-CDS-H-canaliculatus_F_contig14724:1406..15591622929218.350308-CDS-H-canaliculatus_F_contig14724:1406..1559Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14724 1407..1559 +
1696845722.2613401-CDS-H-canaliculatus_F_contig14724:1406..15591696845722.2613401-CDS-H-canaliculatus_F_contig14724:1406..1559Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14724 1407..1559 +
1622929218.3732862-CDS-H-canaliculatus_F_contig14724:1990..20891622929218.3732862-CDS-H-canaliculatus_F_contig14724:1990..2089Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14724 1991..2089 +
1696845722.273033-CDS-H-canaliculatus_F_contig14724:1990..20891696845722.273033-CDS-H-canaliculatus_F_contig14724:1990..2089Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14724 1991..2089 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14724.3606.1prot_H-canaliculatus_F_contig14724.3606.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14724 1407..2089 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14724.3606.1

>prot_H-canaliculatus_F_contig14724.3606.1 ID=prot_H-canaliculatus_F_contig14724.3606.1|Name=mRNA_H-canaliculatus_F_contig14724.3606.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=84bp
NETRNEKVIIFPGVGSFGSAMETLNAKGFTEPLAAYIKQDRPFFGICLGM
QTLFDGSEETPGLKGLGIIPGMVASFDPTKVRCP
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mRNA from alignment at H-canaliculatus_F_contig14724:1407..2089+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14724.3606.1 ID=mRNA_H-canaliculatus_F_contig14724.3606.1|Name=mRNA_H-canaliculatus_F_contig14724.3606.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=683bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14724:1407..2089+ (Hapterophycus canaliculatus Oshoro5f female)
AACGAAACTCGAAACGAAAAGGTGATCATCTTCCCCGGCGTGGGATCCTT
CGGCAGCGCGATGGAAACCCTCAACGCCAAGGGATTCACGGAGCCTCTTG
CGGCGTACATCAAGCAGGACCGACCCTTCTTCGGCATCTGCCTCGGCATG
CAGGTACTAGCCGTAGCCGTTCGCCCTTTCGTCTTAAGTGGGTTACTGTT
GCGCCGAAAGACGGTCGAAGGACCTCAAGACTCCTCTGTGGAAGATTGGC
GGTGAGGCGAGAGGGCGAGGGTTCTTGCGTTTGCGAAAATCGCGGGCAGG
AAACCTCAGCAGGAGCAGCAGCAGGCAGGCAGGCATTGATCCGGGAGGCA
GCTCGAGAAGCAACGAGTCTGCACGGAAAACTCGAGAGGAGTGCGAGGTC
CTGGCTCTGCTGGCGCGGCTGGCCTTTTGCACGACCTTGCACGACCCCGC
CATGCCTCCAACCCCCGTCGCTGTGCGGCGGCTCTCGTCTGTGCAGTGTC
GTTTCATCGTGGCCAACCTCACCCCCCTCGCCCTCACCCACTCGTTGCTA
CGCGTCCGCGGTGTTAACTCGATGGCCGACGAAGACCCTTTTCGATGGGA
GCGAGGAAACCCCCGGGCTCAAGGGATTGGGCATCATCCCGGGCATGGTC
GCGTCCTTCGACCCCACCAAGGTCAGATGTCCG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14724:1407..2089+

>mRNA_H-canaliculatus_F_contig14724.3606.1 ID=mRNA_H-canaliculatus_F_contig14724.3606.1|Name=mRNA_H-canaliculatus_F_contig14724.3606.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=504bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14724:1407..2089+ (Hapterophycus canaliculatus Oshoro5f female)
AACGAAACTCGAAACGAAAAGGTGATCATCTTCCCCGGCGTGGGATCCTT
CGGCAGCGCGATGGAAACCCTCAACGCCAAGGGATTCACGGAGCCTCTTG
CGGCGTACATCAAGCAGGACCGACCCTTCTTCGGCATCTGCCTCGGCATG
CAGAACGAAACTCGAAACGAAAAGGTGATCATCTTCCCCGGCGTGGGATC
CTTCGGCAGCGCGATGGAAACCCTCAACGCCAAGGGATTCACGGAGCCTC
TTGCGGCGTACATCAAGCAGGACCGACCCTTCTTCGGCATCTGCCTCGGC
ATGCAGACCCTTTTCGATGGGAGCGAGGAAACCCCCGGGCTCAAGGGATT
GGGCATCATCCCGGGCATGGTCGCGTCCTTCGACCCCACCAAGGTCAGAT
GTCCGACCCTTTTCGATGGGAGCGAGGAAACCCCCGGGCTCAAGGGATTG
GGCATCATCCCGGGCATGGTCGCGTCCTTCGACCCCACCAAGGTCAGATG
TCCG
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