mRNA_H-canaliculatus_F_contig14716.3601.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14716.3601.1
Unique NamemRNA_H-canaliculatus_F_contig14716.3601.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig14716.3601.1 vs. uniprot
Match: A0A6H5L4B6_9PHAE (Serine/threonine protein phosphatase 2A regulatory subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4B6_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 1.680e-29
Identity = 64/79 (81.01%), Postives = 68/79 (86.08%), Query Frame = 1 
Query:    7 RASMASGERGQGPKEIPLLKDVGIAKREALFVQKVELCTVVYRFDNEMNSNNSGGGDAAEMRGKELKRQTLMELLDFVN 243
            RASMASGERGQ  +E+PLLKDV +AKREALFVQKVELCTVVYRFDNEM   N+   DA E RGKELKRQTLMELLDFVN
Sbjct:   18 RASMASGERGQ-VREVPLLKDVSLAKREALFVQKVELCTVVYRFDNEMTMGNNI--DATETRGKELKRQTLMELLDFVN 93
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BLAST of mRNA_H-canaliculatus_F_contig14716.3601.1 vs. uniprot
Match: D7FHE5_ECTSI (Serine/threonine protein phosphatase 2A regulatory subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHE5_ECTSI)

HSP 1 Score: 115 bits (288), Expect = 1.140e-28
Identity = 62/76 (81.58%), Postives = 66/76 (86.84%), Query Frame = 1 
Query:   16 MASGERGQGPKEIPLLKDVGIAKREALFVQKVELCTVVYRFDNEMNSNNSGGGDAAEMRGKELKRQTLMELLDFVN 243
            MASGERGQ  +E+PLLKDVG+AKREALFVQKVELCTVVYRFDNEM   N+   DA E RGKELKRQTLMELLDFVN
Sbjct:    1 MASGERGQ-VREVPLLKDVGLAKREALFVQKVELCTVVYRFDNEMGMGNNI--DATETRGKELKRQTLMELLDFVN 73
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BLAST of mRNA_H-canaliculatus_F_contig14716.3601.1 vs. uniprot
Match: A0A835ZAF4_9STRA (Serine/threonine protein phosphatase 2A regulatory subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAF4_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 2.710e-14
Identity = 39/66 (59.09%), Postives = 49/66 (74.24%), Query Frame = 1 
Query:   46 KEIPLLKDVGIAKREALFVQKVELCTVVYRFDNEMNSNNSGGGDAAEMRGKELKRQTLMELLDFVN 243
            +E+PLLKDV   KREALF QK++LC+VV+ FD+           A++ RGK+LKRQTLMELLDFVN
Sbjct:    6 RELPLLKDVNPQKREALFQQKLQLCSVVFHFDDP----------ASDQRGKDLKRQTLMELLDFVN 61
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BLAST of mRNA_H-canaliculatus_F_contig14716.3601.1 vs. uniprot
Match: D0N579_PHYIT (Serine/threonine protein phosphatase 2A regulatory subunit n=38 Tax=Peronosporaceae TaxID=4777 RepID=D0N579_PHYIT)

HSP 1 Score: 75.5 bits (184), Expect = 3.990e-14
Identity = 38/81 (46.91%), Postives = 56/81 (69.14%), Query Frame = 1 
Query:    1 RRRASMASGERGQGPKEIPLLKDVGIAKREALFVQKVELCTVVYRFDNEMNSNNSGGGDAAEMRGKELKRQTLMELLDFVN 243
            RRR+ MA  ++ Q  K++P LKD  + +REALF QK+ELC+V++ FD+            ++ RGK+LKRQTL+EL+D+VN
Sbjct:   58 RRRSFMARNQKIQALKDLPHLKDTSLQRREALFQQKLELCSVIFNFDDP----------TSDKRGKDLKRQTLLELVDYVN 128
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BLAST of mRNA_H-canaliculatus_F_contig14716.3601.1 vs. uniprot
Match: A0A5D6XXK9_9STRA (Serine/threonine protein phosphatase 2A regulatory subunit n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XXK9_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 1.000e-13
Identity = 37/81 (45.68%), Postives = 56/81 (69.14%), Query Frame = 1 
Query:    1 RRRASMASGERGQGPKEIPLLKDVGIAKREALFVQKVELCTVVYRFDNEMNSNNSGGGDAAEMRGKELKRQTLMELLDFVN 243
            RRR+ +A  ++ Q  K++P LKD  + +REALF QK+ELC+V++ FD+            ++ RGK+LKRQTL+EL+D+VN
Sbjct:   44 RRRSFLARNQKIQALKDLPHLKDTSLQRREALFQQKLELCSVIFNFDDP----------TSDKRGKDLKRQTLLELVDYVN 114
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BLAST of mRNA_H-canaliculatus_F_contig14716.3601.1 vs. uniprot
Match: K3XB75_GLOUD (Serine/threonine protein phosphatase 2A regulatory subunit n=2 Tax=Pythiaceae TaxID=4782 RepID=K3XB75_GLOUD)

HSP 1 Score: 74.3 bits (181), Expect = 1.010e-13
Identity = 37/81 (45.68%), Postives = 56/81 (69.14%), Query Frame = 1 
Query:    1 RRRASMASGERGQGPKEIPLLKDVGIAKREALFVQKVELCTVVYRFDNEMNSNNSGGGDAAEMRGKELKRQTLMELLDFVN 243
            RRR+ +A  ++ Q  K++P LKD  + +REALF QK+ELC+V++ FD+            ++ RGK+LKRQTL+EL+D+VN
Sbjct:   39 RRRSFLARNQKIQALKDLPHLKDTSLQRREALFQQKLELCSVIFNFDDP----------TSDKRGKDLKRQTLLELVDYVN 109
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BLAST of mRNA_H-canaliculatus_F_contig14716.3601.1 vs. uniprot
Match: A0A397DNG3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397DNG3_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 1.670e-13
Identity = 36/81 (44.44%), Postives = 56/81 (69.14%), Query Frame = 1 
Query:    1 RRRASMASGERGQGPKEIPLLKDVGIAKREALFVQKVELCTVVYRFDNEMNSNNSGGGDAAEMRGKELKRQTLMELLDFVN 243
            RRR+S+   ++    K++P LKD  + KREALF QK+ELC+V++ F++           A++ +GK+LKRQTL+EL+D+VN
Sbjct:   87 RRRSSLVRNQKVAALKDLPHLKDTNMQKREALFQQKLELCSVLFNFEDA----------ASDKKGKDLKRQTLLELVDYVN 157
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BLAST of mRNA_H-canaliculatus_F_contig14716.3601.1 vs. uniprot
Match: A0A1W0A9J9_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A9J9_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 2.020e-13
Identity = 37/81 (45.68%), Postives = 56/81 (69.14%), Query Frame = 1 
Query:    1 RRRASMASGERGQGPKEIPLLKDVGIAKREALFVQKVELCTVVYRFDNEMNSNNSGGGDAAEMRGKELKRQTLMELLDFVN 243
            RRR+S+   ++    K++P LKD  + KREALF QK+ELC+V++ FD+           A++ +GK+LKRQTL+EL+D+VN
Sbjct:   58 RRRSSLVRNQKVAALKDLPHLKDTSMQKREALFQQKLELCSVLFNFDDA----------ASDKKGKDLKRQTLLELVDYVN 128
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BLAST of mRNA_H-canaliculatus_F_contig14716.3601.1 vs. uniprot
Match: A0A6T6TZD8_9STRA (Serine/threonine protein phosphatase 2A regulatory subunit n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A6T6TZD8_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 6.570e-13
Identity = 40/81 (49.38%), Postives = 53/81 (65.43%), Query Frame = 1 
Query:    1 RRRASMASGERGQGPKEIPLLKDVGIAKREALFVQKVELCTVVYRFDNEMNSNNSGGGDAAEMRGKELKRQTLMELLDFVN 243
            RRR+S+   ER    +++P+LKD  ++KRE LF QK+ LC V + FDN  NSN          RGKELKR TL+EL+D+VN
Sbjct:   35 RRRSSIVREERVAALRDLPMLKDTSLSKREMLFKQKLALCCVNFNFDNA-NSNK---------RGKELKRMTLLELVDYVN 105
[Close]
BLAST of mRNA_H-canaliculatus_F_contig14716.3601.1 vs. uniprot
Match: A0A485LJQ3_9STRA (Serine/threonine protein phosphatase 2A regulatory subunit n=17 Tax=Saprolegniaceae TaxID=4764 RepID=A0A485LJQ3_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 6.670e-13
Identity = 36/81 (44.44%), Postives = 56/81 (69.14%), Query Frame = 1 
Query:    1 RRRASMASGERGQGPKEIPLLKDVGIAKREALFVQKVELCTVVYRFDNEMNSNNSGGGDAAEMRGKELKRQTLMELLDFVN 243
            RRR+S+   ++    K++P LKD  + KREALF QK+ELC+V++ F++           A++ +GK+LKRQTL+EL+D+VN
Sbjct:   65 RRRSSLVRNQKVAALKDLPHLKDTNMQKREALFQQKLELCSVLFNFEDA----------ASDKKGKDLKRQTLLELVDYVN 135
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14716.3601.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L4B6_9PHAE1.680e-2981.01Serine/threonine protein phosphatase 2A regulatory... [more]
D7FHE5_ECTSI1.140e-2881.58Serine/threonine protein phosphatase 2A regulatory... [more]
A0A835ZAF4_9STRA2.710e-1459.09Serine/threonine protein phosphatase 2A regulatory... [more]
D0N579_PHYIT3.990e-1446.91Serine/threonine protein phosphatase 2A regulatory... [more]
A0A5D6XXK9_9STRA1.000e-1345.68Serine/threonine protein phosphatase 2A regulatory... [more]
K3XB75_GLOUD1.010e-1345.68Serine/threonine protein phosphatase 2A regulatory... [more]
A0A397DNG3_9STRA1.670e-1344.44Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A1W0A9J9_9STRA2.020e-1345.68Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A6T6TZD8_9STRA6.570e-1349.38Serine/threonine protein phosphatase 2A regulatory... [more]
A0A485LJQ3_9STRA6.670e-1344.44Serine/threonine protein phosphatase 2A regulatory... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14716contigH-canaliculatus_F_contig14716:200..442 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score115.5
Seed ortholog evalue1.1e-23
Seed eggNOG ortholog2880.D7FHE5
KEGG koko:K11584
KEGG Pathwayko03015,ko04071,ko04113,ko04114,ko04151,ko04152,ko04261,ko04728,ko05165,map03015,map04071,map04113,map04114,map04151,map04152,map04261,map04728,map05165
GOsGO:0000096,GO:0000159,GO:0000902,GO:0000904,GO:0002682,GO:0002683,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005777,GO:0005829,GO:0006082,GO:0006139,GO:0006520,GO:0006534,GO:0006555,GO:0006575,GO:0006725,GO:0006732,GO:0006790,GO:0006807,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0008187,GO:0008266,GO:0008287,GO:0009058,GO:0009066,GO:0009069,GO:0009116,GO:0009119,GO:0009653,GO:0009759,GO:0009888,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009968,GO:0009987,GO:0010026,GO:0010090,GO:0010565,GO:0010646,GO:0010648,GO:0016043,GO:0016143,GO:0016144,GO:0017144,GO:0018130,GO:0019216,GO:0019217,GO:0019220,GO:0019222,GO:0019438,GO:0019748,GO:0019752,GO:0019757,GO:0019758,GO:0019760,GO:0019761,GO:0023051,GO:0023057,GO:0030154,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031347,GO:0031348,GO:0031974,GO:0031981,GO:0031998,GO:0032000,GO:0032502,GO:0032989,GO:0032991,GO:0033353,GO:0034641,GO:0042278,GO:0042325,GO:0042343,GO:0042430,GO:0042435,GO:0042579,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044550,GO:0045088,GO:0045824,GO:0045834,GO:0045923,GO:0046128,GO:0046320,GO:0046321,GO:0046439,GO:0046483,GO:0046498,GO:0046500,GO:0048468,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048856,GO:0048869,GO:0050776,GO:0050777,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0050994,GO:0050996,GO:0051174,GO:0051186,GO:0055086,GO:0062012,GO:0062013,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0072521,GO:0080090,GO:0080134,GO:0080183,GO:0090342,GO:0090558,GO:0090626,GO:0097159,GO:1900457,GO:1900458,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901657,GO:1901659,GO:1902494,GO:1903293,GO:2000377
EggNOG free text desc.protein phosphatase regulator activity
EggNOG OGsKOG2085@1,KOG2085@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko03036
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProtein phosphatase 2A regulatory subunit B-prime
Ec32 orthologEc-03_003760.1
Exons1
Model size243
Cds size228
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929217.877746-CDS-H-canaliculatus_F_contig14716:199..4271622929217.877746-CDS-H-canaliculatus_F_contig14716:199..427Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14716 200..427 -
1696845722.041465-CDS-H-canaliculatus_F_contig14716:199..4271696845722.041465-CDS-H-canaliculatus_F_contig14716:199..427Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14716 200..427 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929217.9094532-UTR-H-canaliculatus_F_contig14716:427..4421622929217.9094532-UTR-H-canaliculatus_F_contig14716:427..442Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14716 428..442 -
1696845722.0632648-UTR-H-canaliculatus_F_contig14716:427..4421696845722.0632648-UTR-H-canaliculatus_F_contig14716:427..442Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14716 428..442 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14716.3601.1prot_H-canaliculatus_F_contig14716.3601.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14716 200..427 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14716.3601.1

>prot_H-canaliculatus_F_contig14716.3601.1 ID=prot_H-canaliculatus_F_contig14716.3601.1|Name=mRNA_H-canaliculatus_F_contig14716.3601.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=76bp
MASGERGQGPKEIPLLKDVGIAKREALFVQKVELCTVVYRFDNEMNSNNS
GGGDAAEMRGKELKRQTLMELLDFVN
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mRNA from alignment at H-canaliculatus_F_contig14716:200..442-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14716.3601.1 ID=mRNA_H-canaliculatus_F_contig14716.3601.1|Name=mRNA_H-canaliculatus_F_contig14716.3601.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=243bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14716:200..442- (Hapterophycus canaliculatus Oshoro5f female)
CGGCGCAGGGCCTCCATGGCGTCGGGGGAAAGAGGACAGGGGCCGAAGGA
GATCCCCCTGTTGAAGGATGTAGGGATCGCGAAAAGGGAGGCACTCTTCG
TCCAGAAGGTCGAGCTGTGCACAGTGGTGTACCGGTTCGACAACGAGATG
AACAGCAACAACAGCGGAGGCGGGGATGCGGCGGAAATGCGTGGGAAGGA
GCTCAAGCGACAGACGTTGATGGAGCTCTTGGATTTCGTCAAC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14716:200..442-

>mRNA_H-canaliculatus_F_contig14716.3601.1 ID=mRNA_H-canaliculatus_F_contig14716.3601.1|Name=mRNA_H-canaliculatus_F_contig14716.3601.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=456bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14716:200..442- (Hapterophycus canaliculatus Oshoro5f female)
ATGGCGTCGGGGGAAAGAGGACAGGGGCCGAAGGAGATCCCCCTGTTGAA
GGATGTAGGGATCGCGAAAAGGGAGGCACTCTTCGTCCAGAAGGTCGAGC
TGTGCACAGTGGTGTACCGGTTCGACAACGAGATGAACAGCAACAACAGC
GGAGGCGGGGATGCGGCGGAAATGCGTGGGAAGGAGCTCAAGCGACAGAC
GTTGATGGAGCTCTTGGATTTCGTCAACATGGCGTCGGGGGAAAGAGGAC
AGGGGCCGAAGGAGATCCCCCTGTTGAAGGATGTAGGGATCGCGAAAAGG
GAGGCACTCTTCGTCCAGAAGGTCGAGCTGTGCACAGTGGTGTACCGGTT
CGACAACGAGATGAACAGCAACAACAGCGGAGGCGGGGATGCGGCGGAAA
TGCGTGGGAAGGAGCTCAAGCGACAGACGTTGATGGAGCTCTTGGATTTC
GTCAAC
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