mRNA_H-canaliculatus_F_contig14711.3600.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14711.3600.1
Unique NamemRNA_H-canaliculatus_F_contig14711.3600.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig14711.3600.1 vs. uniprot
Match: A0A6H5JFV2_9PHAE (DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFV2_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 1.610e-24
Identity = 45/45 (100.00%), Postives = 45/45 (100.00%), Query Frame = 1 
Query:    1 APRCPQHQRAGKLLTVRKTGLNKGRKFYACSLPRGEGCDFFMWAE 135
            APRCPQHQRAGKLLTVRKTGLNKGRKFYACSLPRGEGCDFFMWAE
Sbjct:  983 APRCPQHQRAGKLLTVRKTGLNKGRKFYACSLPRGEGCDFFMWAE 1027
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BLAST of mRNA_H-canaliculatus_F_contig14711.3600.1 vs. uniprot
Match: D7G8A0_ECTSI (DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8A0_ECTSI)

HSP 1 Score: 103 bits (256), Expect = 1.610e-24
Identity = 45/45 (100.00%), Postives = 45/45 (100.00%), Query Frame = 1 
Query:    1 APRCPQHQRAGKLLTVRKTGLNKGRKFYACSLPRGEGCDFFMWAE 135
            APRCPQHQRAGKLLTVRKTGLNKGRKFYACSLPRGEGCDFFMWAE
Sbjct:  893 APRCPQHQRAGKLLTVRKTGLNKGRKFYACSLPRGEGCDFFMWAE 937
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BLAST of mRNA_H-canaliculatus_F_contig14711.3600.1 vs. uniprot
Match: W7TAC7_9STRA (DNA helicase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TAC7_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 1.080e-13
Identity = 28/45 (62.22%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:    1 APRCPQHQRAGKLLTVRKTGLNKGRKFYACSLPRGEGCDFFMWAE 135
            AP+C  H +  +LL V+K+G N+GR+FYACS PRGE CDFFMW E
Sbjct:  701 APKCTHHLQTARLLRVKKSGANRGRRFYACSFPRGEECDFFMWVE 745
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BLAST of mRNA_H-canaliculatus_F_contig14711.3600.1 vs. uniprot
Match: A0A482SRV8_9ARCH (RecQ family ATP-dependent DNA helicase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SRV8_9ARCH)

HSP 1 Score: 68.2 bits (165), Expect = 3.360e-12
Identity = 28/45 (62.22%), Postives = 33/45 (73.33%), Query Frame = 1 
Query:    1 APRCPQHQRAGKLLTVRKTGLNKGRKFYACSLPRGEGCDFFMWAE 135
            AP CP H    KLLTV+KTG NKGR+FYAC  P  + C+FF+WAE
Sbjct:  130 APLCPGHSMPAKLLTVKKTGGNKGRRFYACCFPADQRCNFFLWAE 174
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BLAST of mRNA_H-canaliculatus_F_contig14711.3600.1 vs. uniprot
Match: A0A7S4MYJ9_9STRA (Hypothetical protein (Fragment) n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MYJ9_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 3.480e-12
Identity = 31/45 (68.89%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:    4 PRCPQHQRAGKLLTVRK-TGLNKGRKFYACSLPRGEGCDFFMWAE 135
            PRC +H R  +LLTVRK T  N+GRKFYACSLPRGE CD F W E
Sbjct:  111 PRCARHGRPCRLLTVRKNTRGNRGRKFYACSLPRGEQCDHFQWEE 155
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BLAST of mRNA_H-canaliculatus_F_contig14711.3600.1 vs. uniprot
Match: A0A7S4AC91_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AC91_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 4.520e-12
Identity = 28/46 (60.87%), Postives = 36/46 (78.26%), Query Frame = 1 
Query:    1 APRCPQHQRAGKLLTVRKTGL-NKGRKFYACSLPRGEGCDFFMWAE 135
            AP+C +HQR  KL+ V+KT   N+GR+FYACS+PRGE CD F WA+
Sbjct:   66 APKCARHQRPCKLIKVKKTTSGNRGREFYACSMPRGEQCDHFQWAD 111
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BLAST of mRNA_H-canaliculatus_F_contig14711.3600.1 vs. uniprot
Match: A0A448ZEN4_9STRA (DNA helicase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZEN4_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 4.590e-12
Identity = 30/46 (65.22%), Postives = 36/46 (78.26%), Query Frame = 1 
Query:    1 APRCPQHQRAGKLLTVRK-TGLNKGRKFYACSLPRGEGCDFFMWAE 135
            AP+C +HQR  KL+ VRK T  NKGR+FYACS+PRGE CD F WA+
Sbjct:  611 APKCARHQRPCKLIKVRKNTSGNKGREFYACSMPRGEQCDHFQWAD 656
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BLAST of mRNA_H-canaliculatus_F_contig14711.3600.1 vs. uniprot
Match: A0A7S2Q2M5_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2Q2M5_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 4.590e-12
Identity = 31/45 (68.89%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:    4 PRCPQHQRAGKLLTVRK-TGLNKGRKFYACSLPRGEGCDFFMWAE 135
            P C +HQR  KLLTV+K T  NKGRKFY CS+PRGE CDFF W E
Sbjct:  630 PMCTRHQRPCKLLTVKKNTKGNKGRKFYVCSMPRGEQCDFFKWEE 674
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BLAST of mRNA_H-canaliculatus_F_contig14711.3600.1 vs. uniprot
Match: K0T7M4_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T7M4_THAOC)

HSP 1 Score: 65.5 bits (158), Expect = 2.990e-11
Identity = 29/45 (64.44%), Postives = 33/45 (73.33%), Query Frame = 1 
Query:    4 PRCPQHQRAGKLLTVRKTGL-NKGRKFYACSLPRGEGCDFFMWAE 135
            P C +HQR  KLLTV+K    NKGRKF+ CS+PRGE CDFF W E
Sbjct:  551 PLCTRHQRPCKLLTVKKNNKGNKGRKFFVCSMPRGEQCDFFKWEE 595
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BLAST of mRNA_H-canaliculatus_F_contig14711.3600.1 vs. uniprot
Match: A0A7S3QD83_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QD83_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 4.090e-11
Identity = 29/45 (64.44%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:    4 PRCPQHQRAGKLLTVRK-TGLNKGRKFYACSLPRGEGCDFFMWAE 135
            P CP+H R  KLL V+K T  NKGRKFYACS+P+GE CDFF W +
Sbjct:  502 PVCPRHSRPCKLLIVKKNTTGNKGRKFYACSMPQGERCDFFQWED 546
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14711.3600.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JFV2_9PHAE1.610e-24100.00DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D7G8A0_ECTSI1.610e-24100.00DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
W7TAC7_9STRA1.080e-1362.22DNA helicase n=2 Tax=Monodopsidaceae TaxID=425072 ... [more]
A0A482SRV8_9ARCH3.360e-1262.22RecQ family ATP-dependent DNA helicase n=1 Tax=arc... [more]
A0A7S4MYJ9_9STRA3.480e-1268.89Hypothetical protein (Fragment) n=2 Tax=Odontella ... [more]
A0A7S4AC91_9STRA4.520e-1260.87Hypothetical protein (Fragment) n=1 Tax=Pseudo-nit... [more]
A0A448ZEN4_9STRA4.590e-1265.22DNA helicase n=1 Tax=Pseudo-nitzschia multistriata... [more]
A0A7S2Q2M5_9STRA4.590e-1268.89Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
K0T7M4_THAOC2.990e-1164.44Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S3QD83_9STRA4.090e-1164.44Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14711contigH-canaliculatus_F_contig14711:945..1790 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score103.6
Seed ortholog evalue2.5e-20
Seed eggNOG ortholog2880.D7G8A0
KEGG koko:K10730,ko:K12662
KEGG Pathwayko03040,map03040
KEGG ModuleM00354
EggNOG free text desc.four-way junction helicase activity
EggNOG OGsCOG0514@1,KOG0351@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03041,ko03400
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size135
Cds size135
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929217.8096225-CDS-H-canaliculatus_F_contig14711:944..9761622929217.8096225-CDS-H-canaliculatus_F_contig14711:944..976Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14711 945..976 -
1696845722.0122766-CDS-H-canaliculatus_F_contig14711:944..9761696845722.0122766-CDS-H-canaliculatus_F_contig14711:944..976Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14711 945..976 -
1622929217.8287177-CDS-H-canaliculatus_F_contig14711:1687..17901622929217.8287177-CDS-H-canaliculatus_F_contig14711:1687..1790Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14711 1688..1790 -
1696845722.0287447-CDS-H-canaliculatus_F_contig14711:1687..17901696845722.0287447-CDS-H-canaliculatus_F_contig14711:1687..1790Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14711 1688..1790 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14711.3600.1prot_H-canaliculatus_F_contig14711.3600.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14711 945..1790 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14711.3600.1

>prot_H-canaliculatus_F_contig14711.3600.1 ID=prot_H-canaliculatus_F_contig14711.3600.1|Name=mRNA_H-canaliculatus_F_contig14711.3600.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=45bp
APRCPQHQRAGKLLTVRKTGLNKGRKFYACSLPRGEGCDFFMWAE
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mRNA from alignment at H-canaliculatus_F_contig14711:945..1790-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14711.3600.1 ID=mRNA_H-canaliculatus_F_contig14711.3600.1|Name=mRNA_H-canaliculatus_F_contig14711.3600.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=846bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14711:945..1790- (Hapterophycus canaliculatus Oshoro5f female)
GCGCCGAGATGCCCGCAGCACCAACGGGCGGGGAAACTGCTGACGGTTCG
GAAGACCGGCCTCAACAAAGGGAGGAAGTTCTACGCCTGCAGCCTCCCTC
GGGGTGCGTGAGAGAGTTGGTTCGGCACGACCCGGCCGCGGTGCTCTGCG
GCGAGGCACGGCGTACTTATAGCAATGAGATACGTCCTCGGGGTTGACGC
CAAGTGGGCAAGCAAGGTATCGACGCAGATGATACCGTCCGTCGTGCCCC
TTCGTCTCCTGTCATAAAGAAAGACAAATGATGGTAACACGGTAGGAACA
CCTCCTGAGGTACGTATGTCCTGCGAGACGCACCTCGAGGTTTCTGTTGA
GTTCCCACCAATGAGGGTTTCTCCTGTTTCCCGGGGCTCAGCCCAGGGCA
CTCGCTGCTGCAGAACCAAGGGCGGCCGAGGCACTGCCGTCGTTCAGGGT
TTTCGGGAGCCGGTTTCCGGCGACCCCGTTTCGAACCCTCCTTGCTCACA
CGCGTATCTGCTGATGCGGAAGGACAAGCTGAAGGTCGCGCCGTGCGAGC
CACCACGCTGCGCAAACGAACATCCTCATTTTTTCTTTTCCTCTCTCTCT
TTCTCCCTCTCTTCCTCCCTCTCTTCCTCTCTCTCTTCCTCTCTCTCTTC
CTCCCTCCTTCCCTCCCTCCCTTCCTCCCTCTCTTCCTCCCTCCCTTTCT
TCCTCTCTTCCTCCCTCTCTGCCTCCCTCTCTTCCTCCATCTCTTCCTCC
TTCTCTTCCTCCATCCCATCTGTTTCATCGGCGGCGGCGGCGCCGACGAC
GACGACGACGACAGGAGAGGGGTGCGACTTCTTCATGTGGGCCGAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14711:945..1790-

>mRNA_H-canaliculatus_F_contig14711.3600.1 ID=mRNA_H-canaliculatus_F_contig14711.3600.1|Name=mRNA_H-canaliculatus_F_contig14711.3600.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=270bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14711:945..1790- (Hapterophycus canaliculatus Oshoro5f female)
GCGCCGAGATGCCCGCAGCACCAACGGGCGGGGAAACTGCTGACGGTTCG
GAAGACCGGCCTCAACAAAGGGAGGAAGTTCTACGCCTGCAGCCTCCCTC
GGGGCGCCGAGATGCCCGCAGCACCAACGGGCGGGGAAACTGCTGACGGT
TCGGAAGACCGGCCTCAACAAAGGGAGGAAGTTCTACGCCTGCAGCCTCC
CTCGGGGAGAGGGGTGCGACTTCTTCATGTGGGCCGAGGAGAGGGGTGCG
ACTTCTTCATGTGGGCCGAG
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