mRNA_H-canaliculatus_F_contig1471.3598.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1471.3598.1
Unique NamemRNA_H-canaliculatus_F_contig1471.3598.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1471.3598.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1471contigH-canaliculatus_F_contig1471:25909..26602 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size694
Cds size387
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1471.3598.1prot_H-canaliculatus_F_contig1471.3598.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1471 25934..26320 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929217.4299014-UTR-H-canaliculatus_F_contig1471:25908..259331622929217.4299014-UTR-H-canaliculatus_F_contig1471:25908..25933Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1471 25909..25933 +
1696845721.8586893-UTR-H-canaliculatus_F_contig1471:25908..259331696845721.8586893-UTR-H-canaliculatus_F_contig1471:25908..25933Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1471 25909..25933 +
1622929217.4703252-UTR-H-canaliculatus_F_contig1471:26320..266021622929217.4703252-UTR-H-canaliculatus_F_contig1471:26320..26602Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1471 26321..26602 +
1696845721.8838406-UTR-H-canaliculatus_F_contig1471:26320..266021696845721.8838406-UTR-H-canaliculatus_F_contig1471:26320..26602Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1471 26321..26602 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929217.4566746-CDS-H-canaliculatus_F_contig1471:25933..263201622929217.4566746-CDS-H-canaliculatus_F_contig1471:25933..26320Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1471 25934..26320 +
1696845721.8703747-CDS-H-canaliculatus_F_contig1471:25933..263201696845721.8703747-CDS-H-canaliculatus_F_contig1471:25933..26320Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1471 25934..26320 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1471.3598.1

>prot_H-canaliculatus_F_contig1471.3598.1 ID=prot_H-canaliculatus_F_contig1471.3598.1|Name=mRNA_H-canaliculatus_F_contig1471.3598.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=129bp
MCFLKDFAEDERHIDDPGSGDRVADGQISRHEVDHEFYSAVFECVSLHFS
GNLAKQQAAVGRAGGARGIEASRKRYQIGQGVHDEATPKRLTPSQILEGC
KGLQEANATCQALKGSNPKKYWGCRLLH*
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mRNA from alignment at H-canaliculatus_F_contig1471:25909..26602+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1471.3598.1 ID=mRNA_H-canaliculatus_F_contig1471.3598.1|Name=mRNA_H-canaliculatus_F_contig1471.3598.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=694bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1471:25909..26602+ (Hapterophycus canaliculatus Oshoro5f female)
ATCAGTCCGTGACCGATGCATCACCATGTGCTTTCTGAAAGACTTCGCCG
AAGATGAGCGGCACATCGACGATCCCGGCAGTGGCGACCGTGTGGCCGAC
GGACAGATTAGCCGCCATGAAGTCGACCACGAGTTCTACTCGGCGGTGTT
TGAATGCGTTTCCCTTCACTTCTCCGGCAACTTGGCGAAACAACAGGCAG
CAGTGGGGAGAGCCGGAGGGGCAAGAGGGATAGAAGCCTCACGGAAAAGG
TACCAAATCGGACAGGGAGTGCACGACGAAGCAACCCCGAAACGGCTGAC
ACCGTCGCAGATTCTGGAAGGGTGCAAAGGTCTACAAGAAGCGAACGCGA
CCTGCCAGGCTTTAAAAGGCTCCAATCCCAAGAAATATTGGGGCTGTCGA
CTTTTACACTAATTCATACCTGGTACTTTTACAAAATGAAATGATCGCTG
CTATCGAGAGCATTCCGGCTTCAGTCAAATCATAGTCAGTAGGAGACGTG
ATGAGGAGTATCCACAAGGGACACAACTCCGACATGAACACACGCAAGAA
ATTTTCAAGGCTGTCTTGGGCAGGTTTGTTGAGTCATAAACGAAACAAAC
CGTTGTTTATTGAAACCCATCGAATTGTCTTTGCATTATGTCTGGGGTCC
GGGTAGAGCACACGTAGTACGGGGCCCCCTCCTTGTTCCCGAGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1471:25909..26602+

>mRNA_H-canaliculatus_F_contig1471.3598.1 ID=mRNA_H-canaliculatus_F_contig1471.3598.1|Name=mRNA_H-canaliculatus_F_contig1471.3598.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=774bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1471:25909..26602+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTGCTTTCTGAAAGACTTCGCCGAAGATGAGCGGCACATCGACGATCC
CGGCAGTGGCGACCGTGTGGCCGACGGACAGATTAGCCGCCATGAAGTCG
ACCACGAGTTCTACTCGGCGGTGTTTGAATGCGTTTCCCTTCACTTCTCC
GGCAACTTGGCGAAACAACAGGCAGCAGTGGGGAGAGCCGGAGGGGCAAG
AGGGATAGAAGCCTCACGGAAAAGGTACCAAATCGGACAGGGAGTGCACG
ACGAAGCAACCCCGAAACGGCTGACACCGTCGCAGATTCTGGAAGGGTGC
AAAGGTCTACAAGAAGCGAACGCGACCTGCCAGGCTTTAAAAGGCTCCAA
TCCCAAGAAATATTGGGGCTGTCGACTTTTACACTAAATGTGCTTTCTGA
AAGACTTCGCCGAAGATGAGCGGCACATCGACGATCCCGGCAGTGGCGAC
CGTGTGGCCGACGGACAGATTAGCCGCCATGAAGTCGACCACGAGTTCTA
CTCGGCGGTGTTTGAATGCGTTTCCCTTCACTTCTCCGGCAACTTGGCGA
AACAACAGGCAGCAGTGGGGAGAGCCGGAGGGGCAAGAGGGATAGAAGCC
TCACGGAAAAGGTACCAAATCGGACAGGGAGTGCACGACGAAGCAACCCC
GAAACGGCTGACACCGTCGCAGATTCTGGAAGGGTGCAAAGGTCTACAAG
AAGCGAACGCGACCTGCCAGGCTTTAAAAGGCTCCAATCCCAAGAAATAT
TGGGGCTGTCGACTTTTACACTAA
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