mRNA_H-canaliculatus_F_contig14698.3587.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14698.3587.1
Unique NamemRNA_H-canaliculatus_F_contig14698.3587.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14698.3587.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14698contigH-canaliculatus_F_contig14698:2065..2557 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size493
Cds size378
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929214.683535-UTR-H-canaliculatus_F_contig14698:2064..21791622929214.683535-UTR-H-canaliculatus_F_contig14698:2064..2179Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14698 2065..2179 +
1696845721.0052104-UTR-H-canaliculatus_F_contig14698:2064..21791696845721.0052104-UTR-H-canaliculatus_F_contig14698:2064..2179Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14698 2065..2179 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929214.6946335-CDS-H-canaliculatus_F_contig14698:2179..25571622929214.6946335-CDS-H-canaliculatus_F_contig14698:2179..2557Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14698 2180..2557 +
1696845721.015826-CDS-H-canaliculatus_F_contig14698:2179..25571696845721.015826-CDS-H-canaliculatus_F_contig14698:2179..2557Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14698 2180..2557 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14698.3587.1prot_H-canaliculatus_F_contig14698.3587.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14698 2180..2557 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14698.3587.1

>prot_H-canaliculatus_F_contig14698.3587.1 ID=prot_H-canaliculatus_F_contig14698.3587.1|Name=mRNA_H-canaliculatus_F_contig14698.3587.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=126bp
MGVDSFAYDQSKGTEAERHPLHAQGSPTPRVLPHMALSRESSRERHSFHI
VHLSKACHIARASRKGSSSSSLPRLGHSTKTKSNVLIMGGLPQSAALPAA
TPELPGKAREALRHARHSSKKKKKG*
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mRNA from alignment at H-canaliculatus_F_contig14698:2065..2557+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14698.3587.1 ID=mRNA_H-canaliculatus_F_contig14698.3587.1|Name=mRNA_H-canaliculatus_F_contig14698.3587.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=493bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14698:2065..2557+ (Hapterophycus canaliculatus Oshoro5f female)
CGAGGAGAAAGTTTTTAGGACAGAGGTCAAACGAGGCGGCCAGTAGCACG
GCAGCGACAGCGAAGGGTACACCGACAGCGGCCTTGCTCGATGAAGGCAT
TTATCATTTAACCGGATGGGCGTAGACTCGTTTGCGTACGACCAATCCAA
AGGAACCGAGGCAGAACGACACCCTCTACACGCGCAAGGCTCGCCTACAC
CGCGCGTGCTTCCACACATGGCCCTCAGCAGAGAATCATCGAGGGAGAGA
CACAGCTTCCACATCGTACATTTGTCAAAGGCATGCCACATAGCGCGCGC
AAGCCGCAAGGGGTCCAGCTCAAGCTCCCTTCCACGTCTCGGACACTCTA
CTAAAACAAAGTCTAATGTGCTGATTATGGGCGGCCTTCCGCAAAGTGCT
GCCCTGCCTGCCGCAACCCCCGAACTACCAGGCAAAGCTCGAGAAGCCCT
CCGACACGCGCGGCACTCATCGAAAAAAAAAAAAAAAGGATGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14698:2065..2557+

>mRNA_H-canaliculatus_F_contig14698.3587.1 ID=mRNA_H-canaliculatus_F_contig14698.3587.1|Name=mRNA_H-canaliculatus_F_contig14698.3587.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=756bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14698:2065..2557+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGGCGTAGACTCGTTTGCGTACGACCAATCCAAAGGAACCGAGGCAGA
ACGACACCCTCTACACGCGCAAGGCTCGCCTACACCGCGCGTGCTTCCAC
ACATGGCCCTCAGCAGAGAATCATCGAGGGAGAGACACAGCTTCCACATC
GTACATTTGTCAAAGGCATGCCACATAGCGCGCGCAAGCCGCAAGGGGTC
CAGCTCAAGCTCCCTTCCACGTCTCGGACACTCTACTAAAACAAAGTCTA
ATGTGCTGATTATGGGCGGCCTTCCGCAAAGTGCTGCCCTGCCTGCCGCA
ACCCCCGAACTACCAGGCAAAGCTCGAGAAGCCCTCCGACACGCGCGGCA
CTCATCGAAAAAAAAAAAAAAAGGATGAATGGGCGTAGACTCGTTTGCGT
ACGACCAATCCAAAGGAACCGAGGCAGAACGACACCCTCTACACGCGCAA
GGCTCGCCTACACCGCGCGTGCTTCCACACATGGCCCTCAGCAGAGAATC
ATCGAGGGAGAGACACAGCTTCCACATCGTACATTTGTCAAAGGCATGCC
ACATAGCGCGCGCAAGCCGCAAGGGGTCCAGCTCAAGCTCCCTTCCACGT
CTCGGACACTCTACTAAAACAAAGTCTAATGTGCTGATTATGGGCGGCCT
TCCGCAAAGTGCTGCCCTGCCTGCCGCAACCCCCGAACTACCAGGCAAAG
CTCGAGAAGCCCTCCGACACGCGCGGCACTCATCGAAAAAAAAAAAAAAA
GGATGA
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