mRNA_H-canaliculatus_F_contig1469.3584.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1469.3584.1
Unique NamemRNA_H-canaliculatus_F_contig1469.3584.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1469.3584.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1469contigH-canaliculatus_F_contig1469:22917..23342 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size426
Cds size339
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1469.3584.1prot_H-canaliculatus_F_contig1469.3584.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1469 22970..23308 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929214.2462442-UTR-H-canaliculatus_F_contig1469:22916..229691622929214.2462442-UTR-H-canaliculatus_F_contig1469:22916..22969Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1469 22917..22969 +
1696845720.8097644-UTR-H-canaliculatus_F_contig1469:22916..229691696845720.8097644-UTR-H-canaliculatus_F_contig1469:22916..22969Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1469 22917..22969 +
1622929214.2742999-UTR-H-canaliculatus_F_contig1469:23308..233421622929214.2742999-UTR-H-canaliculatus_F_contig1469:23308..23342Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1469 23309..23342 +
1696845720.827299-UTR-H-canaliculatus_F_contig1469:23308..233421696845720.827299-UTR-H-canaliculatus_F_contig1469:23308..23342Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1469 23309..23342 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929214.261803-CDS-H-canaliculatus_F_contig1469:22969..233081622929214.261803-CDS-H-canaliculatus_F_contig1469:22969..23308Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1469 22970..23308 +
1696845720.8183694-CDS-H-canaliculatus_F_contig1469:22969..233081696845720.8183694-CDS-H-canaliculatus_F_contig1469:22969..23308Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1469 22970..23308 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1469.3584.1

>prot_H-canaliculatus_F_contig1469.3584.1 ID=prot_H-canaliculatus_F_contig1469.3584.1|Name=mRNA_H-canaliculatus_F_contig1469.3584.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=113bp
MRFFKGSWVRKTLFGAPCLGRWVKSRSRVLEVKMTDCRYIHLRLRGHRIN
YSLPRQPIELLPGRVSPPPTSCSRMVSVQYWAAFINGVDRRSLLQKFCRA
DLLRPFNDSSVF*
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mRNA from alignment at H-canaliculatus_F_contig1469:22917..23342+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1469.3584.1 ID=mRNA_H-canaliculatus_F_contig1469.3584.1|Name=mRNA_H-canaliculatus_F_contig1469.3584.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=426bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1469:22917..23342+ (Hapterophycus canaliculatus Oshoro5f female)
CCTCGCAATCCGGACAACTTTTGAAGAAACAATTATCAGACCAAAACAAA
TACATGCGGTTCTTCAAGGGTTCTTGGGTAAGAAAAACGCTTTTCGGAGC
CCCTTGCCTCGGGCGGTGGGTGAAGAGCCGGTCCCGCGTTCTTGAAGTGA
AGATGACAGATTGTCGATACATACACCTGAGACTCCGAGGGCACCGTATC
AACTACTCGCTCCCAAGACAACCGATCGAGCTACTACCTGGAAGGGTGTC
ACCTCCACCTACTTCTTGCAGTCGAATGGTCTCGGTGCAGTACTGGGCTG
CGTTTATCAACGGGGTTGACCGACGCTCTCTTCTCCAAAAATTTTGCCGT
GCTGATCTTTTACGGCCCTTCAACGACTCGTCTGTTTTCTAGGACAAAGA
TGGGGAAGACTTTTTCTGGTCCCAAA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1469:22917..23342+

>mRNA_H-canaliculatus_F_contig1469.3584.1 ID=mRNA_H-canaliculatus_F_contig1469.3584.1|Name=mRNA_H-canaliculatus_F_contig1469.3584.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=678bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1469:22917..23342+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCGGTTCTTCAAGGGTTCTTGGGTAAGAAAAACGCTTTTCGGAGCCCC
TTGCCTCGGGCGGTGGGTGAAGAGCCGGTCCCGCGTTCTTGAAGTGAAGA
TGACAGATTGTCGATACATACACCTGAGACTCCGAGGGCACCGTATCAAC
TACTCGCTCCCAAGACAACCGATCGAGCTACTACCTGGAAGGGTGTCACC
TCCACCTACTTCTTGCAGTCGAATGGTCTCGGTGCAGTACTGGGCTGCGT
TTATCAACGGGGTTGACCGACGCTCTCTTCTCCAAAAATTTTGCCGTGCT
GATCTTTTACGGCCCTTCAACGACTCGTCTGTTTTCTAGATGCGGTTCTT
CAAGGGTTCTTGGGTAAGAAAAACGCTTTTCGGAGCCCCTTGCCTCGGGC
GGTGGGTGAAGAGCCGGTCCCGCGTTCTTGAAGTGAAGATGACAGATTGT
CGATACATACACCTGAGACTCCGAGGGCACCGTATCAACTACTCGCTCCC
AAGACAACCGATCGAGCTACTACCTGGAAGGGTGTCACCTCCACCTACTT
CTTGCAGTCGAATGGTCTCGGTGCAGTACTGGGCTGCGTTTATCAACGGG
GTTGACCGACGCTCTCTTCTCCAAAAATTTTGCCGTGCTGATCTTTTACG
GCCCTTCAACGACTCGTCTGTTTTCTAG
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