mRNA_H-canaliculatus_F_contig14688.3582.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
|
Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig14688.3582.1 vs. uniprot
Match: D7FJC4_ECTSI (DNA repair helicase rad5,16, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJC4_ECTSI) HSP 1 Score: 166 bits (420), Expect = 5.770e-46 Identity = 74/82 (90.24%), Postives = 80/82 (97.56%), Query Frame = 1
Query: 25 PGGGLLGVRWRRVILDEAHSIRNTDTKQSRACLQLEADQRWAVTGTPIQNSLDDVAALLAFLRHEPWSDRGWWRRVIADPYK 270
P GGLLGVRW RVILDEAHSIRNT+T+QSRACL+LEADQRWAVTGTPIQNSLDD+AALLAFLRHEPWSDRGWWR+VI+DPYK
Sbjct: 624 PAGGLLGVRWSRVILDEAHSIRNTNTEQSRACLRLEADQRWAVTGTPIQNSLDDMAALLAFLRHEPWSDRGWWRKVISDPYK 705
BLAST of mRNA_H-canaliculatus_F_contig14688.3582.1 vs. uniprot
Match: A0A6H5KHD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHD4_9PHAE) HSP 1 Score: 164 bits (414), Expect = 5.780e-45 Identity = 75/84 (89.29%), Postives = 81/84 (96.43%), Query Frame = 1
Query: 22 YPG-GGLLGVRWRRVILDEAHSIRNTDTKQSRACLQLEADQRWAVTGTPIQNSLDDVAALLAFLRHEPWSDRGWWRRVIADPYK 270
Y G GGLLGVRW RVILDEAHSIRNT+T+QSRACL+LEADQRWAVTGTPIQNSLDD+AALLAFLRHEPWSDRGWWR+VI+DPYK
Sbjct: 999 YQGVGGLLGVRWSRVILDEAHSIRNTNTEQSRACLRLEADQRWAVTGTPIQNSLDDMAALLAFLRHEPWSDRGWWRKVISDPYK 1082
BLAST of mRNA_H-canaliculatus_F_contig14688.3582.1 vs. uniprot
Match: W7T2G0_9STRA (Snf2 family helicase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T2G0_9STRA) HSP 1 Score: 118 bits (296), Expect = 1.470e-32 Identity = 50/79 (63.29%), Postives = 63/79 (79.75%), Query Frame = 1
Query: 34 GLLGVRWRRVILDEAHSIRNTDTKQSRACLQLEADQRWAVTGTPIQNSLDDVAALLAFLRHEPWSDRGWWRRVIADPYK 270
GL GVRW RV+LDEAH+I+N T+ RA LEA +RWA+TGTPIQN LDDV +LL FLRH+PW D WWR+VI++P++
Sbjct: 42 GLFGVRWGRVVLDEAHTIKNQGTEAFRAAFALEASRRWALTGTPIQNVLDDVFSLLRFLRHQPWDDPVWWRKVISEPFQ 120
BLAST of mRNA_H-canaliculatus_F_contig14688.3582.1 vs. uniprot
Match: A0A836CF42_9STRA (SNF2 family N-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF42_9STRA) HSP 1 Score: 124 bits (312), Expect = 3.330e-31 Identity = 57/86 (66.28%), Postives = 66/86 (76.74%), Query Frame = 1
Query: 1 GDGNGGLYPGGGLLGVRWRRVILDEAHSIRNTDTKQSRACLQLEADQRWAVTGTPIQNSLDDVAALLAFLRHEPWSDRGWWRRVIA 258
GDG G GLLG+RWRRVILDEAH+I+N T+ +RA L A+ RWAVTGTPIQNSL+D+ AL+ FLRHEPWSD WW RVIA
Sbjct: 1043 GDGGGTKARVSGLLGLRWRRVILDEAHTIKNATTETARAAFMLRAESRWAVTGTPIQNSLEDLLALVRFLRHEPWSDPVWWNRVIA 1128
BLAST of mRNA_H-canaliculatus_F_contig14688.3582.1 vs. uniprot
Match: A0A5A8D5B7_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8D5B7_CAFRO) HSP 1 Score: 119 bits (299), Expect = 1.840e-29 Identity = 47/79 (59.49%), Postives = 63/79 (79.75%), Query Frame = 1
Query: 37 LLGVRWRRVILDEAHSIRNTDTKQSRACLQLEADQRWAVTGTPIQNSLDDVAALLAFLRHEPWSDRGWWRRVIADPYKV 273
+ G RWRRV+LDEAH+I+NT T SR+CL +EA RWA+TGTP+QNSL D+ +L+ F+RH+PW + WWRRVIA P++
Sbjct: 224 VYGARWRRVVLDEAHAIKNTSTDTSRSCLAIEAVHRWALTGTPVQNSLKDLHSLVRFMRHQPWDEPAWWRRVIAQPFEA 302
BLAST of mRNA_H-canaliculatus_F_contig14688.3582.1 vs. uniprot
Match: A0A5A8CW93_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CW93_CAFRO) HSP 1 Score: 119 bits (299), Expect = 1.850e-29 Identity = 47/79 (59.49%), Postives = 63/79 (79.75%), Query Frame = 1
Query: 37 LLGVRWRRVILDEAHSIRNTDTKQSRACLQLEADQRWAVTGTPIQNSLDDVAALLAFLRHEPWSDRGWWRRVIADPYKV 273
+ G RWRRV+LDEAH+I+NT T SR+CL +EA RWA+TGTP+QNSL D+ +L+ F+RH+PW + WWRRVIA P++
Sbjct: 55 VYGARWRRVVLDEAHAIKNTSTDTSRSCLAIEAVHRWALTGTPVQNSLKDLHSLVRFMRHQPWDEPAWWRRVIAQPFEA 133
BLAST of mRNA_H-canaliculatus_F_contig14688.3582.1 vs. uniprot
Match: A0A5A8CAC5_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CAC5_CAFRO) HSP 1 Score: 119 bits (299), Expect = 1.870e-29 Identity = 47/79 (59.49%), Postives = 63/79 (79.75%), Query Frame = 1
Query: 37 LLGVRWRRVILDEAHSIRNTDTKQSRACLQLEADQRWAVTGTPIQNSLDDVAALLAFLRHEPWSDRGWWRRVIADPYKV 273
+ G RWRRV+LDEAH+I+NT T SR+CL +EA RWA+TGTP+QNSL D+ +L+ F+RH+PW + WWRRVIA P++
Sbjct: 258 VYGARWRRVVLDEAHAIKNTSTDTSRSCLAIEAVHRWALTGTPVQNSLKDLHSLVRFMRHQPWDEPAWWRRVIAQPFEA 336
BLAST of mRNA_H-canaliculatus_F_contig14688.3582.1 vs. uniprot
Match: A0A4D9CS79_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CS79_9STRA) HSP 1 Score: 119 bits (298), Expect = 2.580e-29 Identity = 51/79 (64.56%), Postives = 63/79 (79.75%), Query Frame = 1
Query: 34 GLLGVRWRRVILDEAHSIRNTDTKQSRACLQLEADQRWAVTGTPIQNSLDDVAALLAFLRHEPWSDRGWWRRVIADPYK 270
GL GVRW RV+LDEAH+I+N T+ RA LEA +RWA+TGTPIQN LDDV +LL FLRH+PW D WWR+VIA+P++
Sbjct: 928 GLFGVRWGRVVLDEAHTIKNQGTEAFRAAYALEASRRWALTGTPIQNVLDDVFSLLRFLRHQPWDDPVWWRKVIAEPFQ 1006
BLAST of mRNA_H-canaliculatus_F_contig14688.3582.1 vs. uniprot
Match: A0A8K1CQ45_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CQ45_PYTOL) HSP 1 Score: 112 bits (279), Expect = 9.370e-27 Identity = 49/78 (62.82%), Postives = 59/78 (75.64%), Query Frame = 1
Query: 37 LLGVRWRRVILDEAHSIRNTDTKQSRACLQLEADQRWAVTGTPIQNSLDDVAALLAFLRHEPWSDRGWWRRVIADPYK 270
LLG W RVILDEAHSI+N T RAC L+A RW +TGTPIQNSL D+ +LL FLR+EPWS WW+RVIA+P++
Sbjct: 558 LLGTEWDRVILDEAHSIKNRATTYFRACAALQAVHRWCLTGTPIQNSLSDLFSLLCFLRYEPWSRVAWWKRVIANPFE 635
BLAST of mRNA_H-canaliculatus_F_contig14688.3582.1 vs. uniprot
Match: A0A7J7QN53_9CHLO (SNF2 family N-terminal domain-containing protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7QN53_9CHLO) HSP 1 Score: 110 bits (276), Expect = 2.370e-26 Identity = 50/88 (56.82%), Postives = 66/88 (75.00%), Query Frame = 1
Query: 7 GNGGLYPGGGLLGVRWRRVILDEAHSIRNTDTKQSRACLQLEADQRWAVTGTPIQNSLDDVAALLAFLRHEPWSDRGWWRRVIADPYK 270
G+ GL GGGLLG +W RV+LDEAH+IRN++T+Q++AC L+A +RWAVTGTP+QN L DV LL FL +P DR +WRR + P +
Sbjct: 409 GDVGLRGGGGLLGQQWLRVVLDEAHTIRNSETQQAKACRALKAQRRWAVTGTPLQNRLADVYGLLVFLGLKPLDDRAFWRRCVERPLR 496 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14688.3582.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig14688.3582.1 >prot_H-canaliculatus_F_contig14688.3582.1 ID=prot_H-canaliculatus_F_contig14688.3582.1|Name=mRNA_H-canaliculatus_F_contig14688.3582.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=92bp GDGNGGLYPGGGLLGVRWRRVILDEAHSIRNTDTKQSRACLQLEADQRWAback to top mRNA from alignment at H-canaliculatus_F_contig14688:575..1130- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig14688.3582.1 ID=mRNA_H-canaliculatus_F_contig14688.3582.1|Name=mRNA_H-canaliculatus_F_contig14688.3582.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=556bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14688:575..1130- (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14688:575..1130- >mRNA_H-canaliculatus_F_contig14688.3582.1 ID=mRNA_H-canaliculatus_F_contig14688.3582.1|Name=mRNA_H-canaliculatus_F_contig14688.3582.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=552bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14688:575..1130- (Hapterophycus canaliculatus Oshoro5f female)back to top |