mRNA_H-canaliculatus_F_contig14672.3579.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14672.3579.1
Unique NamemRNA_H-canaliculatus_F_contig14672.3579.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig14672.3579.1 vs. uniprot
Match: D7G5H6_ECTSI (Glycosyltransferase, family GT4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5H6_ECTSI)

HSP 1 Score: 194 bits (493), Expect = 1.670e-55
Identity = 86/98 (87.76%), Postives = 95/98 (96.94%), Query Frame = 1 
Query:    1 RILTQQENRELIRRTLFGSNTDPSSLWTKAPRCLRTAFGNKVPRNDDFFRWTVTPVPDRCLLDHGLNALVDPEQDDLLYVAESIYADRQAFMECLMHE 294
            RILTQQENRELIRRTLFG+  DPS LWTKAPRCL+TAFGNKVPRNDDF+RWT++PVPDRC+LDHGLNALVDPEQDD+LYVAES+YADRQ+FMECLMHE
Sbjct:  441 RILTQQENRELIRRTLFGNGMDPSGLWTKAPRCLQTAFGNKVPRNDDFYRWTISPVPDRCILDHGLNALVDPEQDDVLYVAESVYADRQSFMECLMHE 538
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BLAST of mRNA_H-canaliculatus_F_contig14672.3579.1 vs. uniprot
Match: A0A6H5L9K9_9PHAE (GT4 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9K9_9PHAE)

HSP 1 Score: 193 bits (491), Expect = 3.140e-55
Identity = 85/98 (86.73%), Postives = 95/98 (96.94%), Query Frame = 1 
Query:    1 RILTQQENRELIRRTLFGSNTDPSSLWTKAPRCLRTAFGNKVPRNDDFFRWTVTPVPDRCLLDHGLNALVDPEQDDLLYVAESIYADRQAFMECLMHE 294
            RILTQQENRELIRRTLFG+  DPS LWTKAPRCLRTAFGNKVPRNDDF+RWT++PVPDRC+LDHGLNA+VDPEQD++LYVAES+YADRQ+FMECLMHE
Sbjct:  635 RILTQQENRELIRRTLFGNGMDPSDLWTKAPRCLRTAFGNKVPRNDDFYRWTISPVPDRCILDHGLNAIVDPEQDEVLYVAESVYADRQSFMECLMHE 732
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14672.3579.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G5H6_ECTSI1.670e-5587.76Glycosyltransferase, family GT4 n=1 Tax=Ectocarpus... [more]
A0A6H5L9K9_9PHAE3.140e-5586.73GT4 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14672contigH-canaliculatus_F_contig14672:411..1107 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score193.7
Seed ortholog evalue3.9e-47
Seed eggNOG ortholog2880.D7G5H6
KEGG koko:K03857
KEGG ReactionR05916
KEGG Pathwayko00563,ko01100,map00563,map01100
KEGG ModuleM00065
EggNOG free text desc.phosphatidylinositol N-acetylglucosaminyltransferase activity
EggNOG OGsCOG0438@1,KOG1111@2759
EC2.4.1.198
COG Functional cat.M
CAZyGT4
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01003
Hectar predicted targeting categoryother localisation
Exons2
Model size296
Cds size294
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929214.0009794-CDS-H-canaliculatus_F_contig14672:410..5331622929214.0009794-CDS-H-canaliculatus_F_contig14672:410..533Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14672 411..533 +
1696845720.695007-CDS-H-canaliculatus_F_contig14672:410..5331696845720.695007-CDS-H-canaliculatus_F_contig14672:410..533Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14672 411..533 +
1622929214.0158849-CDS-H-canaliculatus_F_contig14672:934..11051622929214.0158849-CDS-H-canaliculatus_F_contig14672:934..1105Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14672 935..1105 +
1696845720.7070916-CDS-H-canaliculatus_F_contig14672:934..11051696845720.7070916-CDS-H-canaliculatus_F_contig14672:934..1105Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14672 935..1105 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14672.3579.1prot_H-canaliculatus_F_contig14672.3579.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14672 411..1105 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14672.3579.1

>prot_H-canaliculatus_F_contig14672.3579.1 ID=prot_H-canaliculatus_F_contig14672.3579.1|Name=mRNA_H-canaliculatus_F_contig14672.3579.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=98bp
RILTQQENRELIRRTLFGSNTDPSSLWTKAPRCLRTAFGNKVPRNDDFFR
WTVTPVPDRCLLDHGLNALVDPEQDDLLYVAESIYADRQAFMECLMHE
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mRNA from alignment at H-canaliculatus_F_contig14672:411..1107+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14672.3579.1 ID=mRNA_H-canaliculatus_F_contig14672.3579.1|Name=mRNA_H-canaliculatus_F_contig14672.3579.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=697bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14672:411..1107+ (Hapterophycus canaliculatus Oshoro5f female)
AGGATCCTCACCCAGCAAGAGAACCGAGAGCTGATCCGACGGACCCTCTT
CGGCAGCAACACGGATCCCAGCAGCTTGTGGACGAAAGCCCCGAGGTGCC
TGCGGACGGCGTTCGGAAACAAGGTCCGTCTGCACCGGGGTTGGCTTCGT
CCCGTCCGTGGGGACCCTGTCGACTATCCAGGAACCTCCATTGAGCTTAG
GTTTGCGACGCTCGTCGAAATACGTCTCTGCTGCCCATTGACCTTGCCGT
TCTCTTCTGCACCCCGGATGCGACGCTCGTCGAAGAACCTTTCTGAAGGA
AGGGGGCCTCGAGCACGTTCTACCCCGTCCCGACCCGTCCCTCGTTCACG
TCTAGGGGGGGCGAGGAACATTATCGCTCTAGGGCGACGCGTAGAGTCAG
TCTCGAAAATTTATGTTTCCCGGTATTCCGGCGGTGCCAGGGCGTGCCTA
GGAGACTAGTCGAAACGGTAACGGTAACGCCGCCGACGACAAGAACGATA
CCAACGAAACCGACGATGCGACAGGTGCCGCGAAACGACGACTTCTTCCG
GTGGACCGTGACCCCCGTCCCCGACCGCTGCCTCCTCGACCACGGCCTGA
ACGCCCTCGTCGACCCCGAGCAAGACGACCTGCTGTACGTGGCCGAGTCC
ATCTACGCGGACAGGCAGGCCTTCATGGAGTGCCTCATGCACGAGAC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14672:411..1107+

>mRNA_H-canaliculatus_F_contig14672.3579.1 ID=mRNA_H-canaliculatus_F_contig14672.3579.1|Name=mRNA_H-canaliculatus_F_contig14672.3579.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=588bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14672:411..1107+ (Hapterophycus canaliculatus Oshoro5f female)
AGGATCCTCACCCAGCAAGAGAACCGAGAGCTGATCCGACGGACCCTCTT
CGGCAGCAACACGGATCCCAGCAGCTTGTGGACGAAAGCCCCGAGGTGCC
TGCGGACGGCGTTCGGAAACAAGAGGATCCTCACCCAGCAAGAGAACCGA
GAGCTGATCCGACGGACCCTCTTCGGCAGCAACACGGATCCCAGCAGCTT
GTGGACGAAAGCCCCGAGGTGCCTGCGGACGGCGTTCGGAAACAAGGTGC
CGCGAAACGACGACTTCTTCCGGTGGACCGTGACCCCCGTCCCCGACCGC
TGCCTCCTCGACCACGGCCTGAACGCCCTCGTCGACCCCGAGCAAGACGA
CCTGCTGTACGTGGCCGAGTCCATCTACGCGGACAGGCAGGCCTTCATGG
AGTGCCTCATGCACGAGGTGCCGCGAAACGACGACTTCTTCCGGTGGACC
GTGACCCCCGTCCCCGACCGCTGCCTCCTCGACCACGGCCTGAACGCCCT
CGTCGACCCCGAGCAAGACGACCTGCTGTACGTGGCCGAGTCCATCTACG
CGGACAGGCAGGCCTTCATGGAGTGCCTCATGCACGAG
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