mRNA_H-canaliculatus_F_contig1466.3574.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig1466.3574.1 vs. uniprot
Match: D7FRN2_ECTSI (RNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRN2_ECTSI) HSP 1 Score: 660 bits (1702), Expect = 4.390e-208 Identity = 424/820 (51.71%), Postives = 491/820 (59.88%), Query Frame = 1
Query: 985 PLSLSAEVGS--GEPPGKLDEWALALGGALASDTQLIDAVSKGKHGVVLSLGEDPARVFEPTVVDFGDVATIASAGKGGDHRGG------ADAADGKVTERSSREWGAPA------GAGGDVRYSDGGRALSHGGXXXXXXXXMGMQEEDSYLPQGYNFSSERRAVMHANQPSANWASSSATXXXXXXXXXXXXXXXXXXXXXEEVEDDVGVASISFGNFEGRPANSNTAGGW-----GASHKGESGGSAGGANGDRSLRTTAEDSXXXXXXXXXIDGGGPQGDAGAGEE---------------APPLVRTLALSNFGDRPAFLQDLRLMPKDDPGRGLPPFAVRIGDELDSSLLHTQEKGGGGRRRYSLMPGTHLAVEVEFKRQKEAGFCGKWLTLTLGMVDPPPPGHPLLNLVDRVERTFVLGTRLLAQAVDGSAAAVLNAEARRFLPLAHREWFKHSIKGVVDIPRGKNPFHLPLLKALDILEYEVPEAVRKRFILGAESKVPWLVRDPREIMDLAGVEVGPGRLDDYVARFTALMWLEESQMSWDVHQYDLHDVKISLDSSRYREADASTSIVARVEVPGVLESRPRLAIGDVVRLRPPAAQTPEAFPAASKTRRTTGXX------GVVGPDDADGSNRKEENGPDFEVQALVSNVSLSTGTVTLLLPHPGVLNTFAAAADSKAGLSPGSGPELYAQTIAETVERARADNKSSGGGRNT--REEAPLHGWHCKFQLERHGLQFIHHALNGLLTFGDAVEDAAEPGPLRYLFPEPEMLPKAPVWPLPESSFEWVMPSTNDSQRTAVRDIVTGAHGQ 3318
PL L + VG G KLD+W ++LGGALAS+T++ D V+KGK+GVVLSLGEDP EP VVDFGDVAT+ + + G GG A+ + + ER S EWGA GAG +G + L +GG +E+ YLPQGYNFS ERRAVMH Q XXXXXX +VE SISFG+FEGR A+ W GGS G D + + D+ +GD GEE +VRTL L+NF +R FL+DLRLMP+DD GR PPF VRIG+ELDSSL HTQE+ GG RRRYSL PGTHL VEVEF RQ +AGFCGKWLTL L +VDP PP PLL+LVDRVERTFVLGTRLLAQAVDG AAAVL+AEARRFLP AHREWFK+ +KGVV PR NPF+LP L++LD+LE+EVPEAV+KRF+ GAES+VPWLVRD REIM LAGVEVGPGRLDDYVAR++ALMWLEESQMSWDVHQYDLHDV+++LDSSRYRE D ST+IV RVEVPGVLESRPRLA+GDVVRLRPPA +A A K + G VV D DGS++K N PDFEVQ G ELYA+TIA V+ ARA +++G +EEA + GWHC+FQLERHGLQ PLPESSFEWVMPSTNDSQRTAVRDIVTGAHGQ
Sbjct: 79 PLPLGSSVGDDLGHVSSKLDQWTVSLGGALASNTEVCDYVTKGKYGVVLSLGEDP----EPPVVDFGDVATVVPSPREGGRGGGRGQQPLAENGEDQAAERPS-EWGATQHDDSVWGAGWG---QNGQQTLGNGGMQGREDRDE-EEEDGEYLPQGYNFSRERRAVMHPKQ--------QXXXXXXXXRGRGQDGVTGSTGGAAKVES---TPSISFGDFEGRAAH------WEDEXXXXXXXXXXGGSTGSGKDD--VASGPGDAFSPR-----------KGDTQMGEEEGGEXXXXXXXXXXDVASVVRTLELNNFSNRRVFLEDLRLMPRDDAGRA-PPFIVRIGNELDSSLRHTQEEEGG-RRRYSLAPGTHLEVEVEFNRQNQAGFCGKWLTLALSVVDPSPPNQPLLHLVDRVERTFVLGTRLLAQAVDGRAAAVLSAEARRFLPAAHREWFKNPVKGVVATPRANNPFYLPRLRSLDVLEFEVPEAVQKRFLQGAESRVPWLVRDHREIMALAGVEVGPGRLDDYVARYSALMWLEESQMSWDVHQYDLHDVRVTLDSSRYREGDPSTNIVGRVEVPGVLESRPRLAMGDVVRLRPPA----QAKAGAKKVSKANGQHWNGGVGDVVSADGTDGSHQKLGNAPDFEVQ----------------------------------------GSELYAKTIARAVKAARASVQAAGXXXXXXXKEEAAMDGWHCRFQLERHGLQ-----------------------------------------PLPESSFEWVMPSTNDSQRTAVRDIVTGAHGQ 772
BLAST of mRNA_H-canaliculatus_F_contig1466.3574.1 vs. uniprot
Match: A0A6H5KSW5_9PHAE (RNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSW5_9PHAE) HSP 1 Score: 481 bits (1238), Expect = 9.710e-150 Identity = 267/414 (64.49%), Postives = 304/414 (73.43%), Query Frame = 1
Query: 2143 RTFVLGTRLLAQAVDGSAAAVLNAEARRFLPLAHREWFKHSIKGVVDIPRGKNPFHLPLLKALDILEYEVPEAVRKRFILGAESKVPWLVRDPREIMDLAGVEVGPGRLDDYVARFTALMWLEESQMSWDVHQYDLHDVKISLDSSRYREADASTSIVARVEVPGVLESRPRLAIGDVVRLRPPAAQTPEA--FPAASKTRRTTGXXGVVGPDDADGSNRKEENGPDFEVQALVSNVSLSTGTVTLLLPHPGVLNTFAAAADSKAGLSPGSGPELYAQTIAETVERARADNKSSGGGRNTREEAPLH-----------------GWHCKFQLERHGLQFIHHALNGLLTFGDAVEDAAEPGPLRYLFPEPEMLPKAPVWPLPESSFEWVMPSTNDSQRTAVRDIVTGAHGQAST 3327
R LG RLLAQAVDG AAAVLNAEARRFLP AHREWFK +KGVV PR NPF+LP L++L++LE+EVPEAV+KRF+ GAES+VPWLVRD REIM LAGV+VGPGRLDDYVAR++ALMWLEESQMSWDVHQYDLHDV+++LDSSRYRE D ST +V R+EVPGVLESRPRLAIGDVVRLRPPA P A A+ R G GVV D DGS++K N PDFEVQALVSNVSLS G VTLLLPHPG L AA+ S AG ELYA+TIA V+ ARA +++ G A + G C+ +FIHHALN L+ F D+V ++ PLRYLFPEP+MLP+ P+WPLPESSFEWVMPSTNDSQRTAVRDIVTGAHGQAST
Sbjct: 78 RLICLG-RLLAQAVDGRAAAVLNAEARRFLPAAHREWFKCPVKGVVATPRANNPFYLPRLRSLEVLEFEVPEAVQKRFLQGAESRVPWLVRDHREIMALAGVKVGPGRLDDYVARYSALMWLEESQMSWDVHQYDLHDVRVTLDSSRYREGDPSTVVVGRLEVPGVLESRPRLAIGDVVRLRPPAQAIPGAKKVSEANGQHRNGGVGGVVSADGTDGSHQKLGNAPDFEVQALVSNVSLSQGVVTLLLPHPGSLT---AASSSTAG------SELYAKTIARAVKAARASKQAAXXGGXXXAAAAVRTRRRLRWTDGTAGFSWSGMACR--------RFIHHALNRLVMFEDSVSGSS---PLRYLFPEPDMLPETPLWPLPESSFEWVMPSTNDSQRTAVRDIVTGAHGQAST 470
BLAST of mRNA_H-canaliculatus_F_contig1466.3574.1 vs. uniprot
Match: A0A6H5L991_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L991_9PHAE) HSP 1 Score: 114 bits (285), Expect = 1.470e-22 Identity = 150/517 (29.01%), Postives = 188/517 (36.36%), Query Frame = 1
Query: 40 QQQPVFFRQQSAPPSVRVGVGTMPAQTASVMNP----------------SMGGYPQSLIGAVGHAHPEGVAPLSNKEWPSLQAAVASAVPGVAPTGGVRTLPSPAPVQGPAAGGTHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQPFLQHHLHQ----GXXXXXXXXXXXXXXXXXVPQQHQELGHMQTMPTMVSPGPPVFNQFPGGGDFQQAGLAQGLMHSQHQXXXXXXXXXXXXXXXXXXXXXXQLHPHHGEKPQQQSFQGQMVGVGQPQGSYMAQLPGPPIAVASLGPMQPE-------------------------AGGAPFVSTGQTPQQQILAGNPAPGSAPAMVGVSSSSPLSLSAEVGSGEPPGKLDEWALALGGALASDTQLIDAVSKGKHGVVLSLGEDPARVFEPTVVDFGDVATIASAGKGGDHRGGA-----------DAADG----KVTERSSREWGAPAGAGGDVRYSDGGRALSHGGXXXXXXXXMGMQEEDSYLPQG 1410
Q P F+QQS P + G Q V P ++ P + + G P PL ++ WPSLQAA AS PG G R L SP P G QP +QHH Q +PQQ Q+L P+ + GP +FNQ P FQ G+ G++ Q Q QQ FQGQMVG Q YMAQLPG GP E A GA + P + AG+P +PA G PL S SG KLD W ++LGGALAS+T++ D V+KGK+GVVLSLGEDP EP VVDFGDVAT+ + + G GG AA G + T+ + WGA G G +GG G +E+ Y+P G
Sbjct: 10 QHHPALFQQQSGPLAAIGVAGAAALQNTMVAYPRQPLPATRGPAVVTSRALLAAPGAAVRGPGSPSP----PLPHEGWPSLQAATASLAPGATVGGLPRALASPPPPPG--------------VIDIDGACQQYQRQPHQAPSMQMQPHMQHHHQQVRMQPYLPLQQVFPQHQRQMRPIPQQQQQL----MPPSSIPMGPAMFNQ-PPTHHFQHVGMTPGVVPIQQQ---------------------------------QQPFQGQMVGPSQD--LYMAQLPGGAQMGRDQGPAANEQHTKWTLKLHRRRIAVLKKRRRAEVATGAQPAAGAPRPGETDGAGSP--NCSPASPGGFRPLPLGSSVGDDSGHVSSKLDRWTVSLGGALASNTEVCDYVTKGKYGVVLSLGEDP----EPPVVDFGDVATVVPSPREGRKGGGRGQQPLAENGQDQAAKGPSEWEATQHADSVWGAGWGQDGQPTLGNGGMQGREDGDEE--------EEDGEYVPHG 454
BLAST of mRNA_H-canaliculatus_F_contig1466.3574.1 vs. uniprot
Match: A0A4D9D490_9STRA (RNA helicase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D490_9STRA) HSP 1 Score: 99.0 bits (245), Expect = 3.280e-17 Identity = 97/334 (29.04%), Postives = 150/334 (44.91%), Query Frame = 1
Query: 1813 RTLALSNFGDRPAFLQDLRLMPKDDPGRGLPPFAVRIGDELDSSLL--------------HTQEKGGGGRRRYSLMPGT---HLAVEVEFKRQKEAGFCGKWLTLTLGMVDPPP--PGHPLLNLVDRVERTFVLGTRLLAQAVDGSAAAVLNAEARRFLPLAHREWFKHSIKGVVDIPRGKNPFH-LPLLKALDIL-EYEVPEAVRKRFILGAESKVPWLVRDPREIMDLAGVEVGPGRLDDYVARFTALMWLEESQMSWDVHQYDLHDVKISLDSSRYREADA---STSIVARVEVPGVLESRPRLAIGDVVRLRPPAAQTPEAFPAASKTRR 2742
R L + N P L+++ ++PKD+ V +G + SS +EK G L GT H+ ++VE + E+ KW+ L ++ P P H D +FVLG +++A D +A A+LN EAR F+P R +F +V P +PF + + L L +Y +P+ +R+ F+ +K+ + + L G+ P + +Y A+++LEE+Q DV +YDL V I+ YRE + +VA + VPG E RP LA GD VRLRP + PA RR
Sbjct: 106 RLLRIVNDCPGPYVLREVLILPKDETTSACW-IEVEVGGWIFSSQSGRMPWKRSLREMSPSREEKFWTGAPEILLCFGTSDAHVTIKVE--PESESRIVKKWV---LFRIETPGMGPAH------DFQYHSFVLGRKVVASVADRAAQALLNVEARAFVPQGLRRYFDEPCN-MVSHPDEPSPFQPVGMANVLRYLPDYFLPDDIRRAFLGFKAAKLS----ERSDPYSLFGIVKSPTTVLEYCRNMRAMLYLEEAQAGEDVRRYDLFGVPIT-----YREKSKDKPNAPLVATISVPGAAEKRPPLAYGDCVRLRP------SSLPAIGSGRR 411
BLAST of mRNA_H-canaliculatus_F_contig1466.3574.1 vs. uniprot
Match: W7TFX9_9STRA (Rna helicase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TFX9_9STRA) HSP 1 Score: 97.4 bits (241), Expect = 7.790e-17 Identity = 97/334 (29.04%), Postives = 149/334 (44.61%), Query Frame = 1
Query: 1813 RTLALSNFGDRPAFLQDLRLMPKDDPGRGLPPFAVRIGDELDSSLL--------------HTQEKGGGGRRRYSLMPG---THLAVEVEFKRQKEAGFCGKWLTLTLGMVDPPP--PGHPLLNLVDRVERTFVLGTRLLAQAVDGSAAAVLNAEARRFLPLAHREWFKHSIKGVVDIPRGKNPFH-LPLLKALDIL-EYEVPEAVRKRFILGAESKVPWLVRDPREIMDLAGVEVGPGRLDDYVARFTALMWLEESQMSWDVHQYDLHDVKISLDSSRYREADA---STSIVARVEVPGVLESRPRLAIGDVVRLRPPAAQTPEAFPAASKTRR 2742
R L + N P L+++ ++PKD+ V +G + SS +EK G L G H+ ++VE + E+ KW+ L ++ P P H D +FVLG +++A D +A A+LN EAR F+P R +F +V P +PF + + L L Y +P+ +R+ F+ +K+ + + L G+ P + +Y A+++LEE+Q DV +YDL V I+ YRE +T +VA + VPG E RP LA GD VRLRP + PA RR
Sbjct: 297 RLLRIVNDCPGPYVLREVLILPKDETTSACW-IEVEVGGWIFSSQSGRMPWKCSLREMSPSREEKFWTGAPEILLCFGISDAHVTIKVE--PESESRIVKKWV---LFRIETPGMGPAH------DFQYHSFVLGRKVVASVADRAAQALLNVEARAFVPQGLRRYFDEPCN-MVSHPDEPSPFQPVGMANVLRYLPHYFLPDDIRRAFLGFRAAKLS----ERSDPYALFGIVKSPTTVLEYCRNMRAMLYLEEAQAGEDVRRYDLFGVPIT-----YREKSKDKPNTPLVATISVPGAAEKRPPLAYGDCVRLRP------SSLPAIGSGRR 602
BLAST of mRNA_H-canaliculatus_F_contig1466.3574.1 vs. uniprot
Match: A0A835YTD6_9STRA (RNA helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTD6_9STRA) HSP 1 Score: 88.2 bits (217), Expect = 8.100e-14 Identity = 102/329 (31.00%), Postives = 134/329 (40.73%), Query Frame = 1
Query: 2440 AGVEVGPGRLDD------YVARFTALMWLEESQMSWDVHQYDLHDVKISLDSSRYREADASTSIVARVEVPGVLESRPRLAIGDVVRLRPPAAQTPEAFPAASKTRRTTGXXGVVGPDDADGSNRKE-----ENGPDFEVQALVSNVSLSTGTVTLLLPHPGVLNTFAAAADSKAGLSPGSGPELYAQTIAETVERARADNKSSGG----------GRNTR-----------------EEAPLHGWHCKFQLERHGLQFIHHALNGLLTFGDAVEDAAEPGPLRYLFPEPEMLPKAPVWPLPESSFEWVMPSTNDSQRTAVRDIVTGAH 3312
A V GPG D ++ R L+W+EE QM D+ YD+H V+ L +VA + V G +E RPRLAIGD VRLR A AA + G +G + E E A+VS+V L G V +++P A AA + GL P + A+ + + A + G R TR E+AP WH +F R GLQF+H AL G + AA+ RYLFP+ MLP L W+ TN+ QR AV DIVT AH
Sbjct: 792 AAVTQGPGSGDQSGVVQRHIDRLRRLLWIEECQMRRDIESYDMHGVRPRLKMH-------GELMVASILVKGAMEHRPRLAIGDEVRLRVSNVGKGPARGAAVEGDFLQGEAVALGCRVVQTNLNMSMLLDGEAVVVGEAVAVVSSVRLKDGLVKMVMPPEST--AVAVAAHAPPGLLPAT-LNARARRNFQRIVAAHLPPAAPRGVPPPPPRKAPQRKTRVAQXXXXXXXXXXXXXXEDAPPR-WHVRFGFSRLGLQFMHAALQGAMR-----SSAAQ----RYLFPDMAMLPPLTGKQLSPPRVAWINARTNELQRKAVVDIVTRAH 1100 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1466.3574.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1466.3574.1 >prot_H-canaliculatus_F_contig1466.3574.1 ID=prot_H-canaliculatus_F_contig1466.3574.1|Name=mRNA_H-canaliculatus_F_contig1466.3574.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=1111bp QQQQQLQHQHQHHQQQPVFFRQQSAPPSVRVGVGTMPAQTASVMNPSMGGback to top mRNA from alignment at H-canaliculatus_F_contig1466:9440..20033+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig1466.3574.1 ID=mRNA_H-canaliculatus_F_contig1466.3574.1|Name=mRNA_H-canaliculatus_F_contig1466.3574.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=10594bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1466:9440..20033+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1466:9440..20033+ >mRNA_H-canaliculatus_F_contig1466.3574.1 ID=mRNA_H-canaliculatus_F_contig1466.3574.1|Name=mRNA_H-canaliculatus_F_contig1466.3574.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=6666bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1466:9440..20033+ (Hapterophycus canaliculatus Oshoro5f female)back to top |